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Paul Stapor
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2020 – today
- 2023
- [j6]Yannik Schälte
, Fabian Fröhlich, Paul J. Jost, Jakob Vanhoefer, Dilan Pathirana, Paul Stapor, Polina A. Lakrisenko, Dantong Wang, Elba Raimúndez-Álvarez, Simon Merkt, Leonard Schmiester
, Philipp Städter
, Stephan Grein, Erika Dudkin, Domagoj Doresic, Daniel Weindl
, Jan Hasenauer
:
pyPESTO: a modular and scalable tool for parameter estimation for dynamic models. Bioinform. 39(11) (2023) - [j5]Polina A. Lakrisenko
, Paul Stapor, Stephan Grein
, Lukasz Paszkowski, Dilan Pathirana, Fabian Fröhlich
, Glenn Terje Lines, Daniel Weindl
, Jan Hasenauer:
Efficient computation of adjoint sensitivities at steady-state in ODE models of biochemical reaction networks. PLoS Comput. Biol. 19(1) (2023) - [c1]Lorenzo Contento
, Paul Stapor
, Daniel Weindl
, Jan Hasenauer
:
A More Expressive Spline Representation for SBML Models Improves Code Generation Performance in AMICI. CMSB 2023: 36-43 - 2021
- [j4]Fabian Fröhlich
, Daniel Weindl
, Yannik Schälte, Dilan Pathirana, Lukasz Paszkowski, Glenn Terje Lines, Paul Stapor, Jan Hasenauer
:
AMICI: high-performance sensitivity analysis for large ordinary differential equation models. Bioinform. 37(20): 3676-3677 (2021) - [j3]Leonard Schmiester
, Yannik Schälte
, Frank T. Bergmann
, Tacio Camba, Erika Dudkin
, Janine Egert, Fabian Fröhlich
, Lara Fuhrmann
, Adrian L. Hauber
, Svenja Kemmer
, Polina A. Lakrisenko
, Carolin Loos
, Simon Merkt
, Wolfgang Müller
, Dilan Pathirana
, Elba Raimúndez-Álvarez
, Lukas Refisch
, Marcus Rosenblatt
, Paul Stapor
, Philipp Städter
, Dantong Wang
, Franz-Georg Wieland
, Julio R. Banga
, Jens Timmer, Alejandro F. Villaverde
, Sven Sahle, Clemens Kreutz
, Jan Hasenauer
, Daniel Weindl
:
PEtab - Interoperable specification of parameter estimation problems in systems biology. PLoS Comput. Biol. 17(1) (2021)
2010 – 2019
- 2018
- [j2]Paul Stapor
, Daniel Weindl
, Benjamin Ballnus, Sabine Hug, Carolin Loos
, Anna Fiedler, Sabrina Krause, Sabrina Hross, Fabian Fröhlich
, Jan Hasenauer
:
PESTO: Parameter EStimation TOolbox. Bioinform. 34(4): 705-707 (2018) - [j1]Paul Stapor
, Fabian Fröhlich
, Jan Hasenauer
:
Optimization and profile calculation of ODE models using second order adjoint sensitivity analysis. Bioinform. 34(13): i151-i159 (2018)
Coauthor Index
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