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Journal Articles
- 2023
[j5]Jover Lee, James Hadfield, Allison Black, Thomas R. Sibley, Richard A. Neher
, Trevor Bedford, John Huddleston:
Joint visualization of seasonal influenza serology and phylogeny to inform vaccine composition. Frontiers Bioinform. 3 (2023)- 2022
- [j4]Chrispin Chaguza, Gerry Tonkin-Hill, Stephanie W. Lo, James Hadfield, Nicholas J. Croucher, Simon R. Harris, Stephen D. Bentley:
RCandy: an R package for visualizing homologous recombinations in bacterial genomes. Bioinform. 38(5): 1450-1451 (2022) - 2021
- [j3]John Huddleston, James Hadfield, Thomas R. Sibley, Jover Lee, Kairsten Fay, Misja Ilcisin, Elias Harkins, Trevor Bedford, Richard A. Neher, Emma B. Hodcroft:
Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens. J. Open Source Softw. 6(57): 2906 (2021) - 2018
- [j2]James Hadfield, Nicholas J. Croucher, Richard J. Goater, Khalil AbuDahab, David M. Aanensen, Simon R. Harris:
Phandango: an interactive viewer for bacterial population genomics. Bioinform. 34(2): 292-293 (2018) - [j1]James Hadfield, Colin Megill, Sidney M. Bell, John Huddleston, Barney Potter, Charlton Callender, Pavel Sagulenko, Trevor Bedford, Richard A. Neher:
Nextstrain: real-time tracking of pathogen evolution. Bioinform. 34(23): 4121-4123 (2018)
Conference and Workshop Papers
- 2021
- [c1]Rafaela S. Fontenele, Simona Kraberger, James Hadfield, Erin M. Driver, Devin Bowes, LaRinda A. Holland, Temitope O. Faleye, Sangeet Adhikari, Rahul Kumar, Rosa Inchausti, Wydale K. Holmes, Stephanie Deitrick, Philip Brown, Darrell Duty, Aruni Bhatnagar, Ray A. Yeager, Rochelle H. Holm, Kevin Dixon, Tim Constantine, Melissa A. Wilson, Efrem S. Lim, Xiaofang Jiang, Rolf U. Halden, Matthew Scotch, Arvind Varsani:
High-throughput sequencing of SARS-CoV-2 in wastewater provides insights into circulating variants. AMIA 2021
Coauthor Index
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