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Journal Articles
- 2024
[j12]Tram Huynh, Zixuan Cang
:
Topological and geometric analysis of cell states in single-cell transcriptomic data. Briefings Bioinform. 25(3) (2024)- 2023
- [j11]Kathryn Dover, Zixuan Cang, Anna Ma, Qing Nie, Roman Vershynin:
AVIDA: An alternating method for visualizing and integrating data. J. Comput. Sci. 68: 101998 (2023) - 2022
- [j10]Zixuan Cang, Qing Nie, Yanxiang Zhao:
Supervised Optimal Transport. SIAM J. Appl. Math. 82(5): 1851-1877 (2022) - 2021
- [j9]Zixuan Cang, Yangyang Wang, Qixuan Wang, Ken W. Y. Cho, William R. Holmes, Qing Nie:
A multiscale model via single-cell transcriptomics reveals robust patterning mechanisms during early mammalian embryo development. PLoS Comput. Biol. 17(3) (2021) - 2020
- [j8]Zixuan Cang, Elizabeth Munch, Guo-Wei Wei:
Evolutionary homology on coupled dynamical systems with applications to protein flexibility analysis. J. Appl. Comput. Topol. 4(4): 481-507 (2020) - [j7]Menglun Wang, Zixuan Cang, Guo-Wei Wei:
A topology-based network tree for the prediction of protein-protein binding affinity changes following mutation. Nat. Mach. Intell. 2(2): 116-123 (2020) - [j6]Zixuan Cang, Guo-Wei Wei:
Persistent Cohomology for Data With Multicomponent Heterogeneous Information. SIAM J. Math. Data Sci. 2(2): 396-418 (2020) - 2019
- [j5]Duc Duy Nguyen, Zixuan Cang, Kedi Wu, Menglun Wang, Yin Cao, Guo-Wei Wei:
Mathematical deep learning for pose and binding affinity prediction and ranking in D3R Grand Challenges. J. Comput. Aided Mol. Des. 33(1): 71-82 (2019) - 2018
- [j4]Rundong Zhao, Zixuan Cang, Yiying Tong, Guo-Wei Wei:
Protein pocket detection via convex hull surface evolution and associated Reeb graph. Bioinform. 34(17): i830-i837 (2018) - [j3]Zixuan Cang, Lin Mu, Guo-Wei Wei:
Representability of algebraic topology for biomolecules in machine learning based scoring and virtual screening. PLoS Comput. Biol. 14(1) (2018) - 2017
- [j2]Zixuan Cang, Guo-Wei Wei:
Analysis and prediction of protein folding energy changes upon mutation by element specific persistent homology. Bioinform. 33(22): 3549-3557 (2017) - [j1]Zixuan Cang, Guo-Wei Wei:
TopologyNet: Topology based deep convolutional and multi-task neural networks for biomolecular property predictions. PLoS Comput. Biol. 13(7) (2017)
Conference and Workshop Papers
- 2021
- [c1]Zixuan Cang, Xinyi Ning, Annika Nie, Min Xu, Jing Zhang:
Scan-IT: Domain segmentation of spatial transcriptomics images by graph neural network. BMVC 2021: 406
Informal and Other Publications
- 2022
- [i1]Kathryn Dover, Zixuan Cang, Anna Ma, Qing Nie, Roman Vershynin:
AVIDA: Alternating method for Visualizing and Integrating Data. CoRR abs/2206.00135 (2022)
Coauthor Index
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