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Journal Articles
- 2024
[j13]Christophe Jenny
, Valentin Guignon, Felip Manyer I Ballester, Max Ruas, Mathieu Rouard:
Collecting and managing in situ banana genetic resources information (Musa spp.) using online resources and citizen science. Database J. Biol. Databases Curation 2024 (2024)- 2021
- [j12]Margaret Staton, Ethalinda Cannon, Lacey-Anne Sanderson, Jill L. Wegrzyn, Tavis K. Anderson, Sean Buehler, Irene Cobo-Simón, Kay Faaberg, Emily S. Grau, Valentin Guignon, Jessica Gunoskey, Blake Inderski, Sook Jung, Kelly Lager, Dorrie Main, Monica Poelchau, Risharde Ramnath, Peter Richter, Joe West, Stephen P. Ficklin:
Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databases. Briefings Bioinform. 22(6) (2021) - [j11]Valentin Guignon, Abdel Toure, Gaëtan Droc, Jean-François Dufayard, Matthieu G. Conte, Mathieu Rouard:
GreenPhylDB v5: a comparative pangenomic database for plant genomes. Nucleic Acids Res. 49(Database-Issue): D1464-D1471 (2021) - [j10]Valentin Guignon, Catherine Breton, Jérôme Mariette, François Sabot, Julien Fumey, Vincent Lefort, Anna-Sophie Fiston-Lavier:
Ten simple rules for switching from face-to-face to remote conference: An opportunity to estimate the reduction in GHG emissions. PLoS Comput. Biol. 17(10) (2021) - 2019
- [j9]Yaw Nti-Addae, Dave Matthews, Victor Jun M. Ulat, Raza Syed, Guilhem Sempéré, Adrien Pétel, Jon Renner, Pierre Larmande, Valentin Guignon, Elizabeth Jones, Kelly Robbins:
Benchmarking database systems for Genomic Selection implementation. Database J. Biol. Databases Curation 2019: baz096 (2019) - [j8]Peter Selby, Rafael Abbeloos, Jan Erik Backlund, Martin Basterrechea Salido, Guillaume Bauchet, Omar E. Benites-Alfaro, Clayton L. Birkett, Viana C. Calaminos, Pierre Carceller, Guillaume Cornut, Bruno Vasques Costa, Jeremy D. Edwards, Richard Finkers, Star Yanxin Gao, Mehmood Ghaffar, Philip Glaser, Valentin Guignon, Puthick Hok, Andrzej Kilian, Patrick König, Jack Elendil B. Lagare, Matthias Lange, Marie-Angélique Laporte, Pierre Larmande, David S. LeBauer, David A Lyon, David F. Marshall, Dave Matthews, Iain Milne, Naymesh Mistry, Nicolas Morales, Lukas A. Mueller, Pascal Neveu, Evangelia Papoutsoglou, Brian Pearce, Ivan Perez-Masias, Cyril Pommier, Ricardo H. Ramirez-Gonzalez, Abhishek Rathore, Angel Manica Raquel, Sebastian Raubach, Trevor Rife, Kelly Robbins, Mathieu Rouard, Chaitanya Sarma, Uwe Scholz, Guilhem Sempéré, Paul D. Shaw, Reinhard Simon, Nahuel Soldevilla, Gordon Stephen, Qi Sun, Clarysabel Tovar, Grzegorz Uszynski, Maikel Verouden, The BrAPI consortium:
BrAPI - an application programming interface for plant breeding applications. Bioinform. 35(20): 4147-4155 (2019) - 2017
- [j7]Max Ruas, Valentin Guignon, Guilhem Sempéré, Julie Sardos, Yann Hueber, H. Duvergey, Alain Andrieu, Richard Chase, Christophe Jenny, Tom Hazekamp, Brian M. Irish, K. Jelali, J. Adeka, Tomás Ayala-Silva, C. P. Chao, Jeff W. Daniells, B. Dowiya, B. Effa effa, L. Gueco, L. Herradura, L. Ibobondji, E. Kempenaers, J. Kilangi, S. Muhangi, P. Ngo Xuan, J. Paofa, Claudie Pavis, Deless Thiémélé, Colette Tossou, Jeffrey Sandoval, Asti Sutanto, G. Vangu Paka, Guilian Yi, Ines van den houwe, Nicolas Roux, Mathieu Rouard:
MGIS: managing banana (Musa spp.) genetic resources information and high-throughput genotyping data. Database J. Biol. Databases Curation 2017: bax046 (2017) - 2015
- [j6]Alexis Dereeper, Stéphanie Bocs, Mathieu Rouard, Valentin Guignon, Sébastien Ravel, Christine Tranchant-Dubreuil, Valérie Poncet, Olivier Garsmeur, Philippe Lashermes, Gaëtan Droc:
The coffee genome hub: a resource for coffee genomes. Nucleic Acids Res. 43(Database-Issue): 1028-1035 (2015) - 2013
- [j5]Gaëtan Droc, Delphine Larivière, Valentin Guignon, Nabila Yahiaoui, Dominique This, Olivier Garsmeur, Alexis Dereeper, Chantal Hamelin, Xavier Argout, Jean-François Dufayard, Juliette Lengelle, Franc-Christophe Baurens, Alberto Cenci, Bertrand Pitollat, Angélique D'Hont, Manuel Ruiz, Mathieu Rouard, Stéphanie Bocs:
The Banana Genome Hub. Database J. Biol. Databases Curation 2013 (2013) - 2012
- [j4]Valentin Guignon, Gaëtan Droc, Michael Alaux, Franc-Christophe Baurens, Olivier Garsmeur, Claire Poiron, Tim Carver, Mathieu Rouard, Stéphanie Bocs:
Chado Controller: advanced annotation management with a community annotation system. Bioinform. 28(7): 1054-1056 (2012) - 2011
- [j3]Mathieu Rouard, Valentin Guignon, Christelle Aluome, Marie-Angélique Laporte, Gaëtan Droc, Christian Walde, Christian M. Zmasek, Christophe Périn, Matthieu G. Conte:
GreenPhylDB v2.0: comparative and functional genomics in plants. Nucleic Acids Res. 39(Database-Issue): 1095-1102 (2011) - [j2]Aïda Ouangraoua, Valentin Guignon, Sylvie Hamel, Cédric Chauve:
A new algorithm for aligning nested arc-annotated sequences under arbitrary weight schemes. Theor. Comput. Sci. 412(8-10): 753-764 (2011) - 2008
- [j1]Alexis Dereeper, Valentin Guignon, Guillaume Blanc, Stéphane Audic, S. Buffet, François Chevenet, Jean-François Dufayard, Stéphane Guindon, Vincent Lefort, Magali Lescot, Jean-Michel Claverie, Olivier Gascuel:
Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 36(Web-Server-Issue): 465-469 (2008)
Conference and Workshop Papers
- 2023
- [c2]Pierre Larmande, Bertrand Pitollat, Ndomassi Tando, Yann Pomie, Bill Happi, Valentin Guignon, Manuel Ruiz:
AgroLD: a Knowledge Graph for the Plant Sciences. SWAT4HCLS 2023: 167-168 - 2005
- [c1]Valentin Guignon, Cédric Chauve, Sylvie Hamel:
An Edit Distance Between RNA Stem-Loops. SPIRE 2005: 335-347
Coauthor Index
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