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2020 – today
- 2022
[j9]Kate A. Stafford, Brandon M. Anderson, Jon Sorenson
, Henry van den Bedem:
AtomNet PoseRanker: Enriching Ligand Pose Quality for Dynamic Proteins in Virtual High-Throughput Screens. J. Chem. Inf. Model. 62(5): 1178-1189 (2022)- [j8]Xiyu Chen, Sigrid Leyendecker, Henry van den Bedem:
Kinematic Vibrational Entropy Assessment and Analysis of SARS CoV-2 Main Protease. J. Chem. Inf. Model. 62(11): 2869-2879 (2022) - [c7]Aryan Pedawi, Pawel Gniewek, Chaoyi Chang, Brandon M. Anderson, Henry van den Bedem:
An efficient graph generative model for navigating ultra-large combinatorial synthesis libraries. NeurIPS 2022 - [i4]Aryan Pedawi, Pawel Gniewek, Chaoyi Chang, Brandon M. Anderson, Henry van den Bedem:
An efficient graph generative model for navigating ultra-large combinatorial synthesis libraries. CoRR abs/2211.04468 (2022) - 2020
- [c6]Po-Nan Li, Saulo Henrique Pires de Oliveira, Soichi Wakatsuki, Henry van den Bedem:
Sequence-guided protein structure determination using graph convolutional and recurrent networks. BIBE 2020: 122-127 - [i3]Po-Nan Li, Saulo Henrique Pires de Oliveira, Soichi Wakatsuki, Henry van den Bedem:
Sequence-guided protein structure determination using graph convolutional and recurrent networks. CoRR abs/2007.06847 (2020)
2010 – 2019
- 2018
- [j7]Rasmus Fonseca, Dominik Budday, Henry van den Bedem:
Collision-free poisson motion planning in ultra high-dimensional molecular conformation spaces. J. Comput. Chem. 39(12): 711-720 (2018) - [j6]Dominik Budday, Sigrid Leyendecker, Henry van den Bedem:
Kinematic Flexibility Analysis: Hydrogen Bonding Patterns Impart a Spatial Hierarchy of Protein Motion. J. Chem. Inf. Model. 58(10): 2108-2122 (2018) - [i2]Dominik Budday, Sigrid Leyendecker, Henry van den Bedem:
Kinematic Flexibility Analysis: Hydrogen Bonding Patterns Impart a Spatial Hierarchy of Protein Motion. CoRR abs/1802.08683 (2018) - 2017
- [j5]Amélie Héliou, Dominik Budday, Rasmus Fonseca, Henry van den Bedem:
Fast, clash-free RNA conformational morphing using molecular junctions. Bioinform. 33(14): 2114-2122 (2017) - [c5]Amélie Héliou, Dominik Budday, Rasmus Fonseca, Henry van den Bedem:
Fast, Clash-Free RNA Conformational Morphing using Molecular Junctions. BCB 2017: 639 - 2016
- [j4]Rasmus Fonseca, Henry van den Bedem, Julie Bernauer:
Probing RNA Native Conformational Ensembles with Structural Constraints. J. Comput. Biol. 23(5): 362-371 (2016) - [i1]Rasmus Fonseca, Dominik Budday, Henry van den Bedem:
Collision-Free Poisson Motion Planning in Ultra High-Dimensional Molecular Conformation Spaces. CoRR abs/1607.07483 (2016) - 2015
- [j3]Dimitar V. Pachov, Henry van den Bedem:
Nullspace Sampling with Holonomic Constraints Reveals Molecular Mechanisms of Protein Gαs. PLoS Comput. Biol. 11(7) (2015) - [j2]Daniel A. Keedy, James S. Fraser, Henry van den Bedem:
Exposing Hidden Alternative Backbone Conformations in X-ray Crystallography Using qFit. PLoS Comput. Biol. 11(10) (2015) - [c4]Rasmus Fonseca, Henry van den Bedem, Julie Bernauer:
KGSrna: Efficient 3D Kinematics-Based Sampling for Nucleic Acids. RECOMB 2015: 80-95
2000 – 2009
- 2008
- [j1]Peggy Yao, Ankur Dhanik, Nathan Marz, Ryan Propper, Charles Kou, Guanfeng Liu, Henry van den Bedem, Jean-Claude Latombe, Inbal Halperin-Landsberg, Russ B. Altman:
Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops. IEEE ACM Trans. Comput. Biol. Bioinform. 5(4): 534-545 (2008) - [c3]Ankur Dhanik, Henry van den Bedem, Ashley Deacon, Jean-Claude Latombe:
Modeling Structural Heterogeneity in Proteins from X-Ray Data. WAFR 2008: 551-566 - 2007
- [c2]Ankur Dhanik, Peggy Yao, Nathan Marz, Ryan Propper, Charles Kou, Guanfeng Liu, Henry van den Bedem, Jean-Claude Latombe:
Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops. WABI 2007: 265-276 - 2004
- [c1]Itay Lotan, Henry van den Bedem, Ashley Deacon, Jean-Claude Latombe:
Computing Protein Structures from Electron Density Maps: The Missing Fragment Problem. WAFR 2004: 345-360
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