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Journal Articles
- 2023
[j2]Slo-Li Chu, Kazuhiro Sudo
, Hideo Yokota, Kuniya Abe, Yukio Nakamura, Ming-Dar Tsai:
Human induced pluripotent stem cell formation and morphology prediction during reprogramming with time-lapse bright-field microscopy images using deep learning methods. Comput. Methods Programs Biomed. 229: 107264 (2023)- 2018
- [j1]Imad Abugessaisa, Shuhei Noguchi, Michael Böttcher, Akira Hasegawa, Tsukasa Kouno, Sachi Kato, Yuhki Tada, Hiroki Ura, Kuniya Abe, Jay W. Shin, Charles Plessy, Piero Carninci, Takeya Kasukawa:
SCPortalen: human and mouse single-cell centric database. Nucleic Acids Res. 46(Database-Issue): D781-D787 (2018)
Conference and Workshop Papers
- 2023
- [c15]Slo-Li Chu, Kuniya Abe, Kuan-Ting Lin, Hideo Yokota, Dooseon Cho, Ming-Dar Tsai:
Quantitative Analyses for Early Tempo-spatial Patterning of Differentiated Human Induced Pluripotent Stem Cells on Micropatterns using Time-lapse Bright-field Microscopy Images. EMBC 2023: 1-4 - [c14]Slo-Li Chu, Hideo Yokota, Hao-Lun Hsieh, Kuniya Abe, Dooseon Cho, Ming-Dar Tsai:
Quantitative Analysis of Differentiation Activity for Mouse Embryonic Stem Cells by Deep Learning for Cell Center Detection using Three-Dimensional Confocal Fluorescence Microscopy Images. EMBC 2023: 1-4 - 2022
- [c13]Slo-Li Chu, Hideo Yokota, Kuniya Abe, Dooseon Cho, Ming-Dar Tsai:
U-net structures for segmentation of single mouse embryonic stem cells using three-dimensional confocal microscopy images. EMBC 2022: 512-515 - [c12]Slo-Li Chu, Kazuhiro Sudo, Kuniya Abe, Hideo Yokota, Yukio Nakamura, Guan-Ting Liou, Ming-Dar Tsai:
Prediction of Human Induced Pluripotent Stem Cell Formation Based on Deep Learning Analyses Using Time-lapse Brightfield Microscopy Images. EMBC 2022: 2029-2032 - 2021
- [c11]Hideo Yokota, Kuniya Abe, Yuan-Hsiang Chang, Dooseon Cho, Ming-Dar Tsai, Pin-Han Huang:
Visualization and quantitative analyses for mouse embryonic stem cell tracking by manipulating hierarchical data structures using time-lapse confocal microscopy images. EMBC 2021: 2944-2947 - [c10]Slo-Li Chu, Kuniya Abe, Hideo Yokota, Dooseon Cho, Yuan-Hao Chen, Ming-Dar Tsai:
High Resolution U-Net for Quantitatively Analyzing Early Spatial Patterning of Human Induced Pluripotent Stem Cells on Micropatterns. EMBC 2021: 3713-3716 - 2020
- [c9]Slo-Li Chu, Shao-Yu Sung, Ming-Dar Tsai, Kuniya Abe, Kazuhiro Sudo, Yukio Nakamura, Hideo Yokota:
Trend Training Based RNN for Human Induced Pluripotent Stem Cell Reprogramming Prediction Using Time-Lapse Microscopy Images. BIBE 2020: 140-146 - [c8]Slo-Li Chu, Li-Yu Lin, Ming-Dar Tsai, Kuniya Abe, Kazuhiro Sudo, Yukio Nakamura, Hideo Yokota:
CNN Based iPS Cell Formation Stage Classifier for Human iPS Cell Growth Status Prediction Using Time-lapse Microscopy Images. BIBE 2020: 616-621 - [c7]Slo-Li Chu, Kuniya Abe, Hideo Yokota, Kazuhiro Sudo, Yukio Nakamura, Yuan-Hsiang Chang, Liang-Che Fang, Ming-Dar Tsai:
Prediction for Morphology and States of Stem Cell Colonies using a LSTM Network with Progressive Training Microscopy Images. EMBC 2020: 1820-1823 - 2019
- [c6]Yuan-Hsiang Chang, Kuniya Abe, Hideo Yokota, Kazuhiro Sudo, Yukio Nakamura, Slo-Li Chu, Chih-Yung Hsu, Ming-Dar Tsai:
Human Induced Pluripotent Stem Cell Reprogramming Prediction in Microscopy Images using LSTM based RNN. EMBC 2019: 2416-2419 - 2018
- [c5]Yuan-Hsiang Chang, Hideo Yokota, Kuniya Abe, Ming-Dar Tsai:
Three-Dimensional Segmentation of Mouse Embryonic Stem Cell Nuclei for Quantitative Analysis of Differentiation Activity Using Time-Lapse Fluorescence Microscopy Images. BIBE 2018: 299-304 - 2017
- [c4]Yuan-Hsiang Chang, Hideo Yokota, Kuniya Abe, Chun-Chi Chen, Ming-Dar Tsai:
3D Segmentation, Visualization and Quantitative Analysis of Differentiation Activity for Mouse Embryonic Stem Cells using Time-Lapse Fluorescence Microscopy Images. BIBE 2017: 139-144 - [c3]Yuan-Hsiang Chang, Kuniya Abe, Hideo Yokota, Kazuhiro Sudo, Yukio Nakamura, Cheng-Yu Lin, Ming-Dar Tsai:
Human induced pluripotent stem cell region recognition in microscopy images using Convolutional Neural Networks. EMBC 2017: 4058-4061 - 2016
- [c2]Yuan-Hsiang Chang, Hideo Yokota, Kuniya Abe, Chih-Cheng Li, Ming-Dar Tsai:
Fluorescence Microscopy Image Processing and Visualization for Analyzing Cell Kinematics, Proliferation and Attachment in Mouse Embryonic Stem Cell Culture. BIBE 2016: 222-229 - [c1]Yuan-Hsiang Chang, Hideo Yokota, Kuniya Abe, Jung Hsien Liu, Ming-Dar Tsai:
Detection and localization of mouse induced pluripotent stem cell formation using time-lapse fluorescence microscopy images. EMBC 2016: 3914-3917
Coauthor Index
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