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2020 – today
- 2024
[j10]Sanket Wagle
, Alexey Markin, Pawel Górecki, Tavis K. Anderson, Oliver Eulenstein:
Asymmetric Cluster-Based Measures for Comparative Phylogenetics. J. Comput. Biol. 31(4): 312-327 (2024)- 2023
- [j9]Siddhant Grover, Alexey Markin, Tavis K. Anderson, Oliver Eulenstein:
Phylogenetic diversity statistics for all clades in a phylogeny. Bioinform. 39(Supplement-1): 177-184 (2023) - [c12]Sanket Wagle, Alexey Markin, Pawel Górecki, Tavis K. Anderson, Oliver Eulenstein:
The Asymmetric Cluster Affinity Cost. RECOMB-CG 2023: 131-145 - 2022
- [j8]Alexey Markin, Sanket Wagle, Tavis K. Anderson, Oliver Eulenstein:
RF-Net 2: fast inference of virus reassortment and hybridization networks. Bioinform. 38(8): 2144-2152 (2022) - [c11]Adithya Kulkarni, Nasim Sabetpour, Alexey Markin, Oliver Eulenstein, Qi Li:
CPTAM: Constituency Parse Tree Aggregation Method. SDM 2022: 630-638 - [i2]Adithya Kulkarni, Nasim Sabetpour, Alexey Markin, Oliver Eulenstein, Qi Li:
CPTAM: Constituency Parse Tree Aggregation Method. CoRR abs/2201.07905 (2022) - 2021
- [j7]Alexey Markin, Oliver Eulenstein:
Quartet-based inference is statistically consistent under the unified duplication-loss-coalescence model. Bioinform. 37(22): 4064-4074 (2021) - [j6]Jaroslaw Paszek, Alexey Markin, Pawel Górecki, Oliver Eulenstein:
Taming the Duplication-Loss-Coalescence Model with Integer Linear Programming. J. Comput. Biol. 28(8): 758-773 (2021) - [j5]Pawel Tabaszewski, Pawel Górecki, Alexey Markin, Tavis K. Anderson, Oliver Eulenstein:
Consensus of All Solutions for Intractable Phylogenetic Tree Inference. IEEE ACM Trans. Comput. Biol. Bioinform. 18(1): 149-161 (2021) - 2020
- [j4]Alexey Markin:
On the extremal maximum agreement subtree problem. Discret. Appl. Math. 285: 612-620 (2020) - [c10]Javad Ansarifar, Alexey Markin, Pawel Górecki, Oliver Eulenstein:
Integer Linear Programming Formulation for the Unified Duplication-Loss-Coalescence Model. ISBRA 2020: 229-242
2010 – 2019
- 2019
- [j3]Alexey Markin, Oliver Eulenstein:
Computing Manhattan Path-Difference Median Trees: A Practical Local Search Approach. IEEE ACM Trans. Comput. Biol. Bioinform. 16(4): 1063-1076 (2019) - [j2]Alexey Markin, Oliver Eulenstein:
Efficient Local Search for Euclidean Path-Difference Median Trees. IEEE ACM Trans. Comput. Biol. Bioinform. 16(4): 1374-1385 (2019) - [j1]Alexey Markin, Oliver Eulenstein:
Cophenetic Median Trees. IEEE ACM Trans. Comput. Biol. Bioinform. 16(5): 1459-1470 (2019) - [c9]Alexey Markin, Tavis K. Anderson, Venkata Sai Krishna Teja Vadali, Oliver Eulenstein:
Robinson-Foulds Reticulation Networks. BCB 2019: 77-86 - [c8]Pawel Górecki, Alexey Markin, Oliver Eulenstein:
Feasibility Algorithms for the Duplication-Loss Cost. COCOON 2019: 206-218 - [c7]Alexey Markin, Oliver Eulenstein:
Consensus Clusters in Robinson-Foulds Reticulation Networks. WABI 2019: 12:1-12:12 - 2018
- [c6]Pawel Górecki, Alexey Markin, Oliver Eulenstein:
Cophenetic Distances: A Near-Linear Time Algorithmic Framework. COCOON 2018: 168-179 - [c5]Alexey Markin, Venkata Sai Krishna Teja Vadali, Oliver Eulenstein:
Solving the Gene Duplication Feasibility Problem in Linear Time. COCOON 2018: 378-390 - [i1]Alexey Markin:
On the Extremal Maximum Agreement Subtree Problem. CoRR abs/1812.06951 (2018) - 2017
- [c4]Alexey Markin, Oliver Eulenstein:
Cophenetic Median Trees Under the Manhattan Distance. BCB 2017: 194-202 - [c3]Pawel Górecki, Alexey Markin, Agnieszka Mykowiecka, Jaroslaw Paszek, Oliver Eulenstein:
Phylogenetic Tree Reconciliation: Mean Values for Fixed Gene Trees. ISBRA 2017: 234-245 - 2016
- [c2]Alexey Markin, Oliver Eulenstein:
Manhattan Path-Difference Median Trees. BCB 2016: 404-413 - [c1]Alexey Markin, Oliver Eulenstein:
Path-Difference Median Trees. ISBRA 2016: 211-223
Coauthor Index
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