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Peter Csermely
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Journal Articles
- 2022
- [j14]Olivér M. Balogh
, Bettina Benczik
, András Horváth, Mátyás Pétervári, Péter Csermely, Péter Ferdinandy, Bence Ágg
:
Efficient link prediction in the protein-protein interaction network using topological information in a generative adversarial network machine learning model. BMC Bioinform. 23(1): 78 (2022) - [j13]Luca Csabai, Dávid Fazekas, Tamás Kadlecsik, Máté Szalay-Beko, Balázs Bohár, Matthew Madgwick, Dezsö Módos, Marton Olbei, Lejla Gul, Padhmanand Sudhakar
, János Kubisch, Oyebode J. Oyeyemi, Orsolya Liska, Eszter Ari
, Bernadette Hotzi, Viktor A. Billes, Eszter Molnár, László Földvári-Nagy
, Kitti Csályi, Amanda Demeter, Nóra Pápai, Mihály Koltai, Máté Varga
, Katalin Lenti, Illés J. Farkas, Dénes Türei, Péter Csermely, Tibor Vellai, Tamás Korcsmáros
:
SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks. Nucleic Acids Res. 50(D1): 701-709 (2022) - [j12]Dávid Deritei
, Nina Kunsic
, Péter Csermely
:
Probabilistic edge weights fine-tune Boolean network dynamics. PLoS Comput. Biol. 18(10): 1010536 (2022) - 2020
- [j11]Bánk G. Fenyves, Gábor S. Szilágyi
, Zsolt Vassy, Csaba Soti, Peter Csermely
:
Synaptic polarity and sign-balance prediction using gene expression data in the Caenorhabditis elegans chemical synapse neuronal connectome network. PLoS Comput. Biol. 16(12) (2020) - 2019
- [j10]Duanchen Sun, Xian-Wen Ren, Eszter Ari
, Tamás Korcsmáros
, Peter Csermely, Ling-Yun Wu:
Discovering cooperative biomarkers for heterogeneous complex disease diagnoses. Briefings Bioinform. 20(1): 89-101 (2019) - [j9]Bence Ágg
, Andrea Császár
, Máté Szalay-Beko, Dániel V. Veres, Réka Mizsei
, Péter Ferdinandy, Péter Csermely
, István A. Kovács
:
The EntOptLayout Cytoscape plug-in for the efficient visualization of major protein complexes in protein-protein interaction and signalling networks. Bioinform. 35(21): 4490-4492 (2019) - [j8]Péter Mendik, Levente Dobronyi, Ferenc Hári, Csaba Kerepesi, Leonardo Maia-Moço, Donát Buszlai, Peter Csermely
, Dániel V. Veres:
Translocatome: a novel resource for the analysis of protein translocation between cellular organelles. Nucleic Acids Res. 47(Database-Issue): D495-D505 (2019) - 2015
- [j7]Dániel V. Veres
, Dávid M. Gyurkó
, Benedek Thaler, Kristof Z. Szalay
, Dávid Fazekas
, Tamás Korcsmáros
, Peter Csermely
:
ComPPI: a cellular compartment-specific database for protein-protein interaction network analysis. Nucleic Acids Res. 43(Database-Issue): 485-493 (2015) - 2013
- [j6]Tamás Korcsmáros
, Zsuzsanna A. Dunai, Tibor Vellai, Peter Csermely:
Teaching the bioinformatics of signaling networks: an integrated approach to facilitate multi-disciplinary learning. Briefings Bioinform. 14(5): 618-632 (2013) - [j5]Dávid Fazekas
, Mihály Koltai
, Dénes Türei, Dezsö Módos, Máté Pálfy, Zoltán Dúl
, Lilian Zsákai, Máté Szalay-Beko, Katalin Lenti, Illés J. Farkas
, Tibor Vellai, Peter Csermely
, Tamás Korcsmáros
:
SignaLink 2 - a signaling pathway resource with multi-layered regulatory networks. BMC Syst. Biol. 7: 7 (2013) - [j4]Peter Csermely, András London, Ling-Yun Wu, Brian Uzzi:
Structure and dynamics of core/periphery networks. J. Complex Networks 1(2): 93-123 (2013) - 2012
- [j3]Máté Szalay-Beko, Robin Palotai, Balázs Szappanos
, István A. Kovács
, Balázs Papp
, Peter Csermely
:
ModuLand plug-in for Cytoscape: determination of hierarchical layers of overlapping network modules and community centrality. Bioinform. 28(16): 2202-2204 (2012) - 2011
- [j2]Ágoston Mihalik, Peter Csermely
:
Heat Shock Partially Dissociates the Overlapping Modules of the Yeast Protein-Protein Interaction Network: A Systems Level Model of Adaptation. PLoS Comput. Biol. 7(10) (2011) - 2010
- [j1]Tamás Korcsmáros
, Illés J. Farkas
, Mate S. Szalay, Petra Rovó
, Dávid Fazekas
, Zoltán Spiró, Csaba Böde, Katalin Lenti, Tibor Vellai, Peter Csermely
:
Uniformly curated signaling pathways reveal tissue-specific cross-talks and support drug target discovery. Bioinform. 26(16): 2042-2050 (2010)
Informal and Other Publications
- 2020
- [i12]Péter Csermely, Nina Kunsic, Péter Mendik, Márk Kerestély, Teodóra Faragó, Dániel V. Veres, Peter Tompa:
Learning of signaling networks: molecular mechanisms. CoRR abs/2001.11679 (2020) - 2019
- [i11]Bence Ágg, Andrea Császár, Máté Szalay-Beko, Dániel V. Veres, Réka Mizsei, Péter Ferdinandy, Péter Csermely, István A. Kovács:
The EntOptLayout Cytoscape plug-in for the efficient visualization of major protein complexes in protein-protein interaction and signalling networks. CoRR abs/1904.03910 (2019) - 2017
- [i10]Peter Csermely:
The network concept of creativity and deep thinking. Applications to social opinion formation and talent support. CoRR abs/1702.06342 (2017) - 2015
- [i9]Peter Csermely:
Fast and slow thinking - of networks: The complementary 'elite' and 'wisdom of crowds' of amino acid, neuronal and social networks. CoRR abs/1511.01238 (2015) - [i8]Peter Csermely:
Plasticity-rigidity cycles: A general adaptation mechanism. CoRR abs/1511.01239 (2015) - 2013
- [i7]Gabor I. Simko, Peter Csermely:
Nodes having a major influence to break cooperation define a novel centrality measure: game centrality. CoRR abs/1304.3796 (2013) - [i6]Kristof Z. Szalay, Peter Csermely:
Perturbation centrality: a novel centrality measure obtained by the general network dynamics tool, Turbine. CoRR abs/1305.2496 (2013) - [i5]Peter Csermely, András London, Ling-Yun Wu, Brian Uzzi:
Structure and dynamics of core-periphery networks. CoRR abs/1309.6928 (2013) - 2012
- [i4]Merse E. Gaspar, Peter Csermely:
Rigidity and flexibility of biological networks. CoRR abs/1204.6389 (2012) - [i3]Peter Csermely, Tamás Korcsmáros, Huba J. M. Kiss, Gabor London, Ruth Nussinov:
Structure and dynamics of molecular networks: A novel paradigm of drug discovery. A comprehensive review. CoRR abs/1210.0330 (2012) - 2011
- [i2]Máté Szalay-Beko, Robin Palotai, Balázs Szappanos, István A. Kovács, Balázs Papp, Peter Csermely:
ModuLand plug-in for Cytoscape: extensively overlapping modules, community centrality and their use in biological networks. CoRR abs/1111.3033 (2011) - 2009
- [i1]István A. Kovács, Robin Palotai, Mate S. Szalay, Peter Csermely:
Community landscapes: an integrative approach to determine overlapping network module hierarchy, identify key nodes and predict network dynamics. CoRR abs/0912.0161 (2009)
Coauthor Index
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