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ORCIDKristina Gruden
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2020 – today
- 2023
[i2]Jan Kralj, Blaz Skrlj, Ziva Ramsak, Nada Lavrac, Kristina Gruden:
DDeMON: Ontology-based function prediction by Deep Learning from Dynamic Multiplex Networks. CoRR abs/2302.03907 (2023)- 2022
- [j10]Tianyuan Liu
, Pedro Salguero, Marko Petek, Carlos Martínez-Mira, Leandro Balzano-Nogueira, Ziva Ramsak, Lauren McIntyre, Kristina Gruden, Sonia Tarazona, Ana Conesa:
PaintOmics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases. Nucleic Acids Res. 50(W1): 551-559 (2022) - 2020
- [i1]Susanne Hollmann, Andreas Kremer, Spela Baebler, Christophe Trefois, Kristina Gruden, Witold R. Rudnicki, Weida Tong, Aleksandra Gruca, Erik Bongcam-Rudloff, Chris T. A. Evelo, Alina S. Nechyporenko, Marcus Frohme, David Safránek, Babette Regierer, Domenica D'Elia:
The need for standardisation in life science research - an approach to excellence and trust. F1000Research 9: 1398 (2020)
2010 – 2019
- 2019
- [j9]Vid Podpecan, Ziva Ramsak, Kristina Gruden, Hannu Toivonen, Nada Lavrac:
Interactive exploration of heterogeneous biological networks with Biomine Explorer. Bioinform. 35(24): 5385-5388 (2019) - [j8]Dragan Gamberger, Tjasa Stare, Dragana Miljkovic, Kristina Gruden, Nada Lavrac:
Discovery of Relevant Response in Infected Potato Plants from Time Series of Gene Expression Data. Mach. Learn. Knowl. Extr. 1(1): 400-413 (2019) - 2017
- [j7]Spela Baebler, Miha Svalina, Marko Petek, Katja Stare, Ana Rotter, Marusa Pompe-Novak, Kristina Gruden:
quantGenius: implementation of a decision support system for qPCR-based gene quantification. BMC Bioinform. 18(1): 276:1-276:11 (2017) - 2014
- [j6]Dany Morisset, Petra Kralj Novak, Darko Zupanic, Kristina Gruden, Nada Lavrac, Jana Zel:
GMOseek: a user friendly tool for optimized GMO testing. BMC Bioinform. 15: 258 (2014) - [j5]Dragana Miljkovic, Matjaz Depolli, Tjasa Stare, Igor Mozetic, Marko Petek, Kristina Gruden, Nada Lavrac:
Plant defence model revisions through iterative minimisation of constraint violations. Int. J. Comput. Biol. Drug Des. 7(1): 61-79 (2014) - [j4]Ziva Ramsak, Spela Baebler, Ana Rotter, Matej Korbar, Igor Mozetic, Björn Usadel, Kristina Gruden:
GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology. Nucleic Acids Res. 42(Database-Issue): 1167-1175 (2014) - 2013
- [j3]Annette Block, Frédéric Debode, Lutz Grohmann, Julie Hulin, Isabel Taverniers, Linda Kluga, Elodie Barbau-Piednoir, Sylvia Broeders, Ingrid Huber, Marc Van den Bulcke, Petra Heinze, Gilbert Berben, Ulrich Busch, Nancy Roosens, Eric Janssen, Jana Zel, Kristina Gruden, Dany Morisset:
The GMOseek matrix: a decision support tool for optimizing the detection of genetically modified plants. BMC Bioinform. 14: 256 (2013) - [j2]Laura Langohr, Vid Podpecan, Marko Petek, Igor Mozetic, Kristina Gruden, Nada Lavrac, Hannu Toivonen:
Contrasting Subgroup Discovery. Comput. J. 56(3): 289-303 (2013) - [c4]Vid Podpecan, Dragana Miljkovic, Marko Petek, Tjasa Stare, Kristina Gruden, Igor Mozetic, Nada Lavrac:
Integrating semantic transcriptomic data analysis and knowledge extraction from biological literature. BIBM 2013: 477-480 - [c3]Dragana Miljkovic, Vid Podpecan, Tjasa Stare, Igor Mozetic, Kristina Gruden, Nada Lavrac:
Incremental revision of biological networks from texts. IWBBIO 2013: 1-9 - 2012
- [c2]Dragana Miljkovic, Matjaz Depolli, Igor Mozetic, Nada Lavrac, Tjasa Stare, Marko Petek, Kristina Gruden:
Constraint-driven optimization of plant defense model parameters. BIBM Workshops 2012: 570-574 - [p3]Igor Mozetic, Nada Lavrac, Vid Podpecan, Petra Kralj Novak, Helena Motaln, Marko Petek, Kristina Gruden, Hannu Toivonen, Kimmo Kulovesi:
Semantic Subgroup Discovery and Cross-Context Linking for Microarray Data Analysis. Bisociative Knowledge Discovery 2012: 379-389 - [p2]Laura Langohr, Vid Podpecan, Marko Petek, Igor Mozetic, Kristina Gruden:
Contrast Mining from Interesting Subgroups. Bisociative Knowledge Discovery 2012: 390-406 - [p1]Dragana Miljkovic, Vid Podpecan, Miha Grcar, Kristina Gruden, Tjasa Stare, Marko Petek, Igor Mozetic, Nada Lavrac:
Modelling a Biological System: Network Creation by Triplet Extraction from Biological Literature. Bisociative Knowledge Discovery 2012: 427-437 - 2011
- [j1]Vid Podpecan, Nada Lavrac, Igor Mozetic, Petra Kralj Novak, Igor Trajkovski, Laura Langohr, Kimmo Kulovesi, Hannu Toivonen, Marko Petek, Helena Motaln, Kristina Gruden:
SegMine workflows for semantic microarray data analysis in Orange4WS. BMC Bioinform. 12: 416 (2011) - 2010
- [c1]Igor Mozetic, Nada Lavrac, Vid Podpecan, Petra Kralj Novak, Helena Motaln, Marko Petek, Kristina Gruden, Hannu Toivonen, Kimmo Kulovesi:
Bisociative Knowledge Discovery for Microarray Data Analysis. ICCC 2010: 190-199
Coauthor Index
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