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Jeffrey Shaman
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Journal Articles
- 2023
- [j24]Sasikiran Kandula
, Mark Olfson, Madelyn S. Gould, Katherine M. Keyes, Jeffrey Shaman:
Hindcasts and forecasts of suicide mortality in US: A modeling study. PLoS Comput. Biol. 19(3) (2023) - [j23]Wan Yang
, Jeffrey Shaman:
Development of Accurate Long-lead COVID-19 Forecast. PLoS Comput. Biol. 19(7) (2023) - [j22]Jaime Cascante-Vega
, Marta Galanti, Katharina Schley, Sen Pei, Jeffrey Shaman:
Inference of transmission dynamics and retrospective forecast of invasive meningococcal disease. PLoS Comput. Biol. 19(10) (2023) - 2022
- [j21]Tapio Schneider
, Oliver R. A. Dunbar
, Jinlong Wu
, Lucas Böttcher
, Dmitry Burov
, Alfredo Garbuno-Inigo
, Gregory LeClaire Wagner
, Sen Pei
, Chiara Daraio
, Raffaele Ferrari
, Jeffrey Shaman
:
Epidemic management and control through risk-dependent individual contact interventions. PLoS Comput. Biol. 18(6) (2022) - [j20]Israel Ukawuba
, Jeffrey Shaman
:
Inference and dynamic simulation of malaria using a simple climate-driven entomological model of malaria transmission. PLoS Comput. Biol. 18(6) (2022) - 2020
- [j19]Rose Orenbuch
, Ioan Filip, Devon Comito, Jeffrey Shaman, Itsik Pe'er, Raul Rabadan
:
arcasHLA: high-resolution HLA typing from RNAseq. Bioinform. 36(1): 33-40 (2020) - [j18]Sarah C. Kramer
, Sen Pei
, Jeffrey Shaman:
Forecasting influenza in Europe using a metapopulation model incorporating cross-border commuting and air travel. PLoS Comput. Biol. 16(10) (2020) - [j17]Sen Pei
, Jeffrey Shaman:
Aggregating forecasts of multiple respiratory pathogens supports more accurate forecasting of influenza-like illness. PLoS Comput. Biol. 16(10) (2020) - 2019
- [j16]Sarah C. Kramer
, Jeffrey Shaman
:
Development and validation of influenza forecasting for 64 temperate and tropical countries. PLoS Comput. Biol. 15(2) (2019) - [j15]Sen Pei
, Mark A. Cane, Jeffrey Shaman
:
Predictability in process-based ensemble forecast of influenza. PLoS Comput. Biol. 15(2) (2019) - [j14]Wan Yang
, Juan Li, Jeffrey Shaman
:
Characteristics of measles epidemics in China (1951-2004) and implications for elimination: A case study of three key locations. PLoS Comput. Biol. 15(2) (2019) - [j13]Wan Yang, Liang Wen, Shen-Long Li, Kai Chen, Wen-Yi Zhang, Jeffrey Shaman:
Correction: Geospatial characteristics of measles transmission in China during 2005-2014. PLoS Comput. Biol. 15(6) (2019) - [j12]Sasikiran Kandula
, Jeffrey Shaman
:
Reappraising the utility of Google Flu Trends. PLoS Comput. Biol. 15(8) (2019) - [j11]Nicholas G. Reich
, Craig J. McGowan
, Teresa K. Yamana
, Abhinav Tushar
, Evan L. Ray
, Dave Osthus
, Sasikiran Kandula
, Logan C. Brooks, Willow Crawford-Crudell, Graham Casey Gibson, Evan Moore, Rebecca Silva, Matthew Biggerstaff
, Michael A. Johansson, Roni Rosenfeld
, Jeffrey Shaman
:
Accuracy of real-time multi-model ensemble forecasts for seasonal influenza in the U.S. PLoS Comput. Biol. 15(11) (2019) - 2018
- [j10]Nicholas B. DeFelice
, Zachary D. Schneider
, Eliza Little
, Christopher Barker
, Kevin A. Caillouët, Scott R. Campbell, Dan Damian, Patrick Irwin, Herff M. P. Jones, John Townsend, Jeffrey Shaman
:
Use of temperature to improve West Nile virus forecasts. PLoS Comput. Biol. 14(3) (2018) - 2017
- [j9]Wan Yang
, Liang Wen, Shen-Long Li, Kai Chen
, Wen-Yi Zhang, Jeffrey Shaman
:
Geospatial characteristics of measles transmission in China during 2005-2014. PLoS Comput. Biol. 13(4) (2017) - [j8]Jeffrey Shaman, Sasikiran Kandula, Wan Yang
, Alicia Karspeck:
The use of ambient humidity conditions to improve influenza forecast. PLoS Comput. Biol. 13(11) (2017) - [j7]Teresa K. Yamana
, Sasikiran Kandula, Jeffrey Shaman:
Individual versus superensemble forecasts of seasonal influenza outbreaks in the United States. PLoS Comput. Biol. 13(11) (2017) - 2016
- [j6]Julia Reis
, Jeffrey Shaman:
Retrospective Parameter Estimation and Forecast of Respiratory Syncytial Virus in the United States. PLoS Comput. Biol. 12(10) (2016) - [j5]Wan Yang
, Donald R. Olson
, Jeffrey Shaman:
Forecasting Influenza Outbreaks in Boroughs and Neighborhoods of New York City. PLoS Comput. Biol. 12(11) (2016) - 2015
- [j4]Wan Yang
, Benjamin J. Cowling
, Eric H. Y. Lau
, Jeffrey Shaman:
Forecasting Influenza Epidemics in Hong Kong. PLoS Comput. Biol. 11(7) (2015) - [j3]James Tamerius, Cécile Viboud, Jeffrey Shaman, Gerardo Chowell:
Impact of School Cycles and Environmental Forcing on the Timing of Pandemic Influenza Activity in Mexican States, May-December 2009. PLoS Comput. Biol. 11(8) (2015) - 2014
- [j2]Wan Yang
, Alicia Karspeck, Jeffrey Shaman:
Comparison of Filtering Methods for the Modeling and Retrospective Forecasting of Influenza Epidemics. PLoS Comput. Biol. 10(4) (2014) - [j1]Julia R. Gog
, Sébastien Ballesteros, Cécile Viboud, Lone Simonsen
, Ottar N. Bjørnstad, Jeffrey Shaman, Dennis L. Chao
, Farid Khan, Bryan T. Grenfell
:
Spatial Transmission of 2009 Pandemic Influenza in the US. PLoS Comput. Biol. 10(6) (2014)
Informal and Other Publications
- 2021
- [i2]Tapio Schneider, Oliver R. A. Dunbar, Jinlong Wu, Lucas Böttcher, Dmitry Burov, Alfredo Garbuno-Iñigo, Gregory LeClaire Wagner, Sen Pei, Chiara Daraio, Raffaele Ferrari, Jeffrey Shaman:
Epidemic Management and Control Through Risk-Dependent Individual Contact Interventions. CoRR abs/2109.10970 (2021) - 2016
- [i1]Sen Pei, Xian Teng, Jeffrey Shaman, Flaviano Morone, Hernán A. Makse:
Collective influence maximization in threshold models of information cascading with first-order transitions. CoRR abs/1606.02739 (2016)
Coauthor Index
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