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Journal Articles
- 2016
[j6]Sheida Nabavi, Daniel Schmolze
, Mayinuer Maitituoheti, Sadhika Malladi, Andrew H. Beck:
EMDomics: a robust and powerful method for the identification of genes differentially expressed between heterogeneous classes. Bioinform. 32(4): 533-541 (2016)- [j5]Petr Smirnov, Zhaleh Safikhani, Nehme Hachem, Dong Wang, Adrian She, Catharina Olsen, Mark Freeman, Heather Marie Selby, Deena M. A. Gendoo, Patrick Grossmann, Andrew H. Beck, Hugo J. W. L. Aerts, Mathieu Lupien, Anna Goldenberg, Benjamin Haibe-Kains:
PharmacoGx: an R package for analysis of large pharmacogenomic datasets. Bioinform. 32(8): 1244-1246 (2016) - [j4]Zhaleh Safikhani, Nehme Hachem, Petr Smirnov, Mark Freeman, Anna Goldenberg, Nicolai J. Birkbak, Andrew H. Beck, Hugo J. W. L. Aerts, John Quackenbush, Benjamin Haibe-Kains:
Safikhani et al. reply. Nat. 540(7631): E2-E4 (2016) - 2013
- [j3]Benjamin Haibe-Kains, Nehme El-Hachem, Nicolai J. Birkbak, Andrew C. Jin, Andrew H. Beck, Hugo J. W. L. Aerts, John Quackenbush:
Inconsistency in large pharmacogenomic studies. Nat. 504(7480): 389-393 (2013) - [j2]Andrew H. Beck, Nicholas W. Knoblauch, Marco M. Hefti, Jennifer Kaplan, Stuart J. Schnitt, Aedín C. Culhane, Markus S. Schröder, Thomas Risch, John Quackenbush, Benjamin Haibe-Kains:
Significance Analysis of Prognostic Signatures. PLoS Comput. Biol. 9(1) (2013) - 2012
- [j1]Jens-Peter Volkmer, Debashis Sahoo, Robert K. Chin, Philip Levy Ho, Chad Tang, Antonina V. Kurtova, Stephen B. Willingham, Senthil K. Pazhanisamy, Humberto Contreras-Trujillo, Theresa A. Storm, Yair Lotan, Andrew H. Beck, Benjamin I. Chung, Ash A. Alizadeh, Guilherme Godoy, Seth P. Lerner, Matt van de Rijn, Linda D. Shortliffe, Irving L. Weissman, Keith S. Chan:
Three differentiation states risk-stratify bladder cancer into distinct subtypes. Proc. Natl. Acad. Sci. USA 109(6): 2078-2083 (2012)
Conference and Workshop Papers
- 2017
- [c3]Manan A. Shah, Dayong Wang, Christopher Rubadue, David Suster, Andrew H. Beck:
Deep learning assessment of tumor proliferation in breast cancer histological images. BIBM 2017: 600-603 - [c2]Babak Ehteshami Bejnordi, Jimmy Lin, Ben Glass, Maeve Mullooly, Gretchen L. Gierach, Mark E. Sherman, Nico Karssemeijer, Jeroen van der Laak, Andrew H. Beck:
Deep learning-based assessment of tumor-associated stroma for diagnosing breast cancer in histopathology images. ISBI 2017: 929-932 - 2015
- [c1]Sheida Nabavi, Andrew H. Beck:
Earth mover's distance for differential analysis of heterogeneous genomics data. GlobalSIP 2015: 963-966
Informal and Other Publications
- 2024
- [i5]Dinkar Juyal, Harshith Padigela, Chintan Shah, Daniel Shenker, Natalia Harguindeguy, Yi Liu, Blake Martin, Yibo Zhang, Michael Nercessian, Miles Markey, Isaac Finberg, Kelsey Luu, Daniel Borders, Syed Ashar Javed, Emma Krause, Raymond Biju, Aashish Sood, Allen Ma, Jackson Nyman, John Shamshoian, Guillaume Chhor, Darpan Sanghavi, Marc Thibault, Limin Yu, Fedaa Najdawi, Jennifer A. Hipp, Darren Fahy, Benjamin Glass, Eric Walk, John Abel, Harsha Pokkalla, Andrew H. Beck, Sean Grullon:
PLUTO: Pathology-Universal Transformer. CoRR abs/2405.07905 (2024) - 2018
- [i4]Mitko Veta, Yujing J. Heng, Nikolas Stathonikos, Babak Ehteshami Bejnordi, Francisco Beca, Thomas Wollmann, Karl Rohr, Manan A. Shah, Dayong Wang, Mikaël Rousson, Martin Hedlund, David Tellez, Francesco Ciompi, Erwan Zerhouni, David Lanyi, Matheus Palhares Viana, Vassili Kovalev, Vitali Liauchuk, Hady Ahmady Phoulady, Talha Qaiser, Simon Graham, Nasir M. Rajpoot, Erik Sjöblom, Jesper Molin, Kyunghyun Paeng, Sangheum Hwang, Sunggyun Park, Zhipeng Jia, Eric I-Chao Chang, Yan Xu, Andrew H. Beck, Paul J. van Diest, Josien P. W. Pluim:
Predicting breast tumor proliferation from whole-slide images: the TUPAC16 challenge. CoRR abs/1807.08284 (2018) - 2017
- [i3]Babak Ehteshami Bejnordi, Jimmy Lin, Ben Glass, Maeve Mullooly, Gretchen L. Gierach, Mark E. Sherman, Nico Karssemeijer, Jeroen van der Laak, Andrew H. Beck:
Deep learning-based assessment of tumor-associated stroma for diagnosing breast cancer in histopathology images. CoRR abs/1702.05803 (2017) - 2016
- [i2]Dayong Wang, Aditya Khosla, Rishab Gargeya, Humayun Irshad, Andrew H. Beck:
Deep Learning for Identifying Metastatic Breast Cancer. CoRR abs/1606.05718 (2016) - [i1]Humayun Irshad, Eun-Yeong Oh, Daniel Schmolze, Liza M. Quintana, Laura Collins, Rulla M. Tamimi, Andrew H. Beck:
Crowdsourcing scoring of immunohistochemistry images: Evaluating Performance of the Crowd and an Automated Computational Method. CoRR abs/1606.06681 (2016)
Coauthor Index
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