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Journal Articles
- 2023
[j11]Colline Blanc
, Shiva Shahrampour, Feroze B. Mohamed, Benjamin De Leener:
Combining PropSeg and a convolutional neural network for automatic spinal cord segmentation in pediatric populations and patients with spinal cord injury. Int. J. Imaging Syst. Technol. 33(4): 1396-1405 (2023)- 2021
- [j10]Caroline Landelle, Ovidiu V. Lungu, Shahabeddin Vahdat, Anne Kavounoudias, Véronique Marchand-Pauvert, Benjamin De Leener, Julien Doyon:
Investigating the human spinal sensorimotor pathways through functional magnetic resonance imaging. NeuroImage 245: 118684 (2021) - 2019
- [j9]Charley Gros, Benjamin De Leener, Atef Badji, Josefina Maranzano, Dominique Eden, Sara M. Dupont, Jason Talbott, Ren Zhuoquiong, Yaou Liu, Tobias Granberg, Russell Ouellette, Yasuhiko Tachibana, Masaaki Hori, Kouhei Kamiya, Lydia Chougar, Leszek Stawiarz, Jan Hillert, Elise Bannier, Julien Cohen-Adad:
Automatic segmentation of the spinal cord and intramedullary multiple sclerosis lesions with convolutional neural networks. NeuroImage 184: 901-915 (2019) - 2018
- [j8]Charley Gros, Benjamin De Leener, Sara M. Dupont, Allan R. Martin, Michael G. Fehlings, Rohit Bakshi, Subhash Tummala, Vincent Auclair, Donald G. McLaren, Virginie Callot, Julien Cohen-Adad, Michaël Sdika:
Automatic spinal cord localization, robust to MRI contrasts using global curve optimization. Medical Image Anal. 44: 215-227 (2018) - [j7]Benjamin De Leener, Vladimir S. Fonov, D. Louis Collins, Virginie Callot, Nikola Stikov, Julien Cohen-Adad:
PAM50: Unbiased multimodal template of the brainstem and spinal cord aligned with the ICBM152 space. NeuroImage 165: 170-179 (2018) - 2017
- [j6]Benjamin De Leener, Simon Lévy, Sara M. Dupont, Vladimir S. Fonov, Nikola Stikov, D. Louis Collins, Virginie Callot, Julien Cohen-Adad:
SCT: Spinal Cord Toolbox, an open-source software for processing spinal cord MRI data. NeuroImage 145: 24-43 (2017) - [j5]Sara M. Dupont, Benjamin De Leener, Manuel Taso, Arnaud Le Troter, Sylvie Nadeau, Nikola Stikov, Virginie Callot, Julien Cohen-Adad:
Fully-integrated framework for the segmentation and registration of the spinal cord white and gray matter. NeuroImage 150: 358-372 (2017) - [j4]Ferran Prados, John Ashburner, Claudia Blaiotta, Tom Brosch, Julio Carballido-Gamio, Manuel Jorge Cardoso, Benjamin N. Conrad, Esha Datta, Gergely Dávid, Benjamin De Leener, Sara M. Dupont, Patrick Freund, Claudia A. M. Gandini Wheeler-Kingshott, Francesco Grussu, Roland G. Henry, Bennett A. Landman, Emil Ljungberg, Bailey Lyttle, Sébastien Ourselin, Nico Papinutto, Salvatore Saporito, Regina Schlaeger, Seth A. Smith, Paul E. Summers, Roger C. Tam, Marios C. Yiannakas, Alyssa H. Zhu, Julien Cohen-Adad:
Spinal cord grey matter segmentation challenge. NeuroImage 152: 312-329 (2017) - 2015
- [j3]Benjamin De Leener, Julien Cohen-Adad, Samuel Kadoury:
Automatic Segmentation of the Spinal Cord and Spinal Canal Coupled With Vertebral Labeling. IEEE Trans. Medical Imaging 34(8): 1705-1718 (2015) - 2014
- [j2]Benjamin De Leener, Samuel Kadoury, Julien Cohen-Adad:
Robust, accurate and fast automatic segmentation of the spinal cord. NeuroImage 98: 528-536 (2014) - [j1]Vladimir S. Fonov, Arnaud Le Troter, Manuel Taso, Benjamin De Leener, G. Lévêque, M. Benhamou, Michaël Sdika, Habib Benali, Pierre-Franois Pradat, D. Louis Collins, Virginie Callot, Julien Cohen-Adad:
Framework for integrated MRI average of the spinal cord white and gray matter: The MNI-Poly-AMU template. NeuroImage 102: 817-827 (2014)
Conference and Workshop Papers
- 2022
- [c5]Andjela Dimitrijevic, Vincent Noblet, Benjamin De Leener:
Deep Learning-Based Longitudinal Intra-subject Registration of Pediatric Brain MR Images. WBIR 2022: 206-210 - 2017
- [c4]Adam Porisky, Tom Brosch, Emil Ljungberg, Lisa Y. W. Tang, Youngjin Yoo, Benjamin De Leener, Anthony Traboulsee, Julien Cohen-Adad, Roger C. Tam:
Grey Matter Segmentation in Spinal Cord MRIs via 3D Convolutional Encoder Networks with Shortcut Connections. DLMIA/ML-CDS@MICCAI 2017: 330-337 - [c3]Charley Gros, Benjamin De Leener, Sara M. Dupont, Allan R. Martin, Michael G. Fehlings, Rohit Bakshi, Subhash Tummala, Vincent Auclair, Donald G. McLaren, Virginie Callot, Michaël Sdika, Julien Cohen-Adad:
OptiC: Robust and Automatic Spinal Cord Localization on a Large Variety of MRI Data Using a Distance Transform Based Global Optimization. MICCAI (2) 2017: 712-719 - 2016
- [c2]Anais Badoual, Maxime Gerard, Benjamin De Leener, Nadine Abi-Jaoudeh, Samuel Kadoury:
3D vascular path planning of chemo-embolizations using segmented hepatic arteries from MR angiography. ISBI 2016: 1346-1349 - 2014
- [c1]Benjamin De Leener, Julien Cohen-Adad, Samuel Kadoury:
Automatic 3D segmentation of spinal cord MRI using propagated deformable models. Medical Imaging: Image Processing 2014: 90343R
Informal and Other Publications
- 2024
- [i2]Andjela Dimitrijevic, Vincent Noblet, Benjamin De Leener:
Impact of Initialization on Intra-subject Pediatric Brain MR Image Registration: A Comparative Analysis between SyN ANTs and Deep Learning-Based Approaches. CoRR abs/2406.19943 (2024) - 2018
- [i1]Charley Gros, Benjamin De Leener, Atef Badji, Josefina Maranzano, Dominique Eden, Sara M. Dupont, Jason Talbott, Ren Zhuoquiong, Yaou Liu, Tobias Granberg, Russell Ouellette, Yasuhiko Tachibana, Masaaki Hori, Kouhei Kamiya, Lydia Chougar, Leszek Stawiarz, Jan Hillert, Elise Bannier, Anne Kerbrat, Gilles Edan, Pierre Labauge, Virginie Callot, Jean Pelletier, Bertrand Audoin, Henitsoa Rasoanandrianina, Jean-Christophe Brisset, Paola Valsasina, Maria Assunta Rocca, Massimo Filippi, Rohit Bakshi, Shahamat Tauhid, Ferran Prados, Marios C. Yiannakas, Hugh Kearney, Olga Ciccarelli, Seth A. Smith, Constantina Andrada Treaba, Caterina Mainero, Jennifer Lefeuvre, Daniel S. Reich, Govind Nair, Vincent Auclair, Donald G. McLaren, Allan R. Martin, Michael G. Fehlings, Shahabeddin Vahdat, Ali Khatibi, Julien Doyon, Timothy M. Shepherd, Erik Charlson, Sridar Narayanan, Julien Cohen-Adad:
Automatic segmentation of the spinal cord and intramedullary multiple sclerosis lesions with convolutional neural networks. CoRR abs/1805.06349 (2018)
Coauthor Index
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