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2020 – today
- 2024
[j8]Pedro A. Saa
, Sebastian Zapararte, Christopher C. Drovandi, Lars Keld Nielsen:
LooplessFluxSampler: an efficient toolbox for sampling the loopless flux solution space of metabolic models. BMC Bioinform. 25(1): 3 (2024)- 2022
- [j7]Verónica S. Martínez, Pedro A. Saa, Jason Jooste, Kanupriya Tiwari, Lake-Ee Quek, Lars Keld Nielsen:
The topology of genome-scale metabolic reconstructions unravels independent modules and high network flexibility. PLoS Comput. Biol. 18(6) (2022) - 2021
- [j6]Vishnuvardhan Mahamkali, Tim McCubbin, Moritz Emanuel Beber, Elad Noor, Esteban Marcellin, Lars Keld Nielsen:
multiTFA: a Python package for multi-variate thermodynamics-based flux analysis. Bioinform. 37(18): 3064-3066 (2021)
2010 – 2019
- 2016
- [j5]Pedro A. Saa, Lars Keld Nielsen:
ll-ACHRB: a scalable algorithm for sampling the feasible solution space of metabolic networks. Bioinform. 32(15): 2330-2337 (2016) - [j4]Pedro A. Saa, Lars Keld Nielsen:
Fast-SNP: a fast matrix pre-processing algorithm for efficient loopless flux optimization of metabolic models. Bioinform. 32(24): 3807-3814 (2016) - 2015
- [j3]Pedro A. Saa, Lars Keld Nielsen:
A General Framework for Thermodynamically Consistent Parameterization and Efficient Sampling of Enzymatic Reactions. PLoS Comput. Biol. 11(4) (2015) - 2014
- [j2]Liam G. Fearnley, Melissa J. Davis, Mark A. Ragan, Lars Keld Nielsen:
Extracting reaction networks from databases-opening Pandora's box. Briefings Bioinform. 15(6): 973-983 (2014) - [j1]Lake-Ee Quek, Lars Keld Nielsen:
A depth-first search algorithm to compute elementary flux modes by linear programming. BMC Syst. Biol. 8: 94 (2014) - [c1]Liam G. Fearnley, Mark A. Ragan, Lars Keld Nielsen:
Towards a Large Integrated Model of Signal Transduction and Gene Regulation Events in Mammalian Cells. BIOINFORMATICS 2014: 117-122
Coauthor Index
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