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Journal Articles
- 2023
[j18]Zach D. Merino
, Jenny Farmer, Donald J. Jacobs:
Probability Density Estimation through Nonparametric Adaptive Partitioning and Stitching. Algorithms 16(7): 310 (2023)- 2022
- [j17]Chris S. Avery, Lonnie Baker, Donald J. Jacobs:
Functional Dynamics of Substrate Recognition in TEM Beta-Lactamase. Entropy 24(5): 729 (2022) - [j16]Jenny Farmer, Donald J. Jacobs:
PDFEstimator: An R Package for Density Estimation and Analysis. R J. 14(2): 310-324 (2022) - [j15]Jenny Farmer, Donald J. Jacobs:
MATLAB tool for probability density assessment and nonparametric estimation. SoftwareX 18: 101017 (2022) - 2021
- [j14]John Patterson, Chris S. Avery, Tyler Grear, Donald J. Jacobs:
Biased Hypothesis Formation From Projection Pursuit. Adv. Artif. Intell. Mach. Learn. 1(3): 221-233 (2021) - [j13]Charles C. David, Chris S. Avery, Donald J. Jacobs:
JEDi: java essential dynamics inspector - a molecular trajectory analysis toolkit. BMC Bioinform. 22(1): 226 (2021) - [j12]Donald J. Jacobs:
Victory Tax: A Holistic Income Tax System. Entropy 23(11): 1492 (2021) - 2019
- [j11]Jenny Farmer, Zach D. Merino, Alexander Gray, Donald J. Jacobs:
Universal Sample Size Invariant Measures for Uncertainty Quantification in Density Estimation. Entropy 21(11): 1120 (2019) - 2017
- [j10]Charles C. David, Ettayapuram Ramaprasad Azhagiya Singam, Donald J. Jacobs:
JED: a Java Essential Dynamics Program for comparative analysis of protein trajectories. BMC Bioinform. 18(1): 271:1-271:9 (2017) - [j9]Jenny Farmer, Fareeha Kanwal, Nikita Nikulsin, Matthew C. B. Tsilimigras, Donald J. Jacobs:
Statistical Measures to Quantify Similarity between Molecular Dynamics Simulation Trajectories. Entropy 19(12): 646 (2017) - 2015
- [j8]Luis C. González, Hui Wang, Dennis R. Livesay, Donald J. Jacobs:
A virtual pebble game to ensemble average graph rigidity. Algorithms Mol. Biol. 10: 11 (2015) - [j7]Tong Li, Malgorzata B. Tracka, Shahid Uddin, Jose Casas-Finet, Donald J. Jacobs, Dennis R. Livesay:
Rigidity Emerges during Antibody Evolution in Three Distinct Antibody Systems: Evidence from QSFR Analysis of Fab Fragments. PLoS Comput. Biol. 11(7) (2015) - 2013
- [j6]Deeptak Verma, Donald J. Jacobs, Dennis R. Livesay:
Variations within Class-A β-Lactamase Physiochemical Properties Reflect Evolutionary and Environmental Patterns, but not Antibiotic Specificity. PLoS Comput. Biol. 9(7) (2013) - 2012
- [j5]Deeptak Verma, Donald J. Jacobs, Dennis R. Livesay:
Changes in Lysozyme Flexibility upon Mutation Are Frequent, Large and Long-Ranged. PLoS Comput. Biol. 8(3) (2012) - 2011
- [j4]Scott Barlowe, Yujie Liu, Jing Yang, Dennis R. Livesay, Donald J. Jacobs, James Mottonen, Deeptak Verma:
WaveMap: Interactively Discovering Features From Protein Flexibility Matrices Using Wavelet-based Visual Analytics. Comput. Graph. Forum 30(3): 1001-1010 (2011) - 2010
- [j3]Simina Vasilache, Nazanin Mirshahi, Soo-Yeon Ji, James Mottonen, Donald J. Jacobs, Kayvan Najarian:
A Signal Processing Method to Explore Similarity in Protein Flexibility. Adv. Bioinformatics 2010: 454671:1-454671:8 (2010) - 2009
- [j2]Donald J. Jacobs:
Best Probability Density Function for Random Sampled Data. Entropy 11(4): 1001-1024 (2009) - 2008
- [j1]Oleg K. Vorov, Dennis R. Livesay, Donald J. Jacobs:
Conformational Entropy of an Ideal Cross-Linking Polymer Chain. Entropy 10(3): 285-308 (2008)
Conference and Workshop Papers
- 2021
- [c4]Tyler Grear, Donald J. Jacobs:
Classifying EEG motor imagery signals using supervised projection pursuit for artefact removal. SMC 2021: 2952-2958 - 2013
- [c3]Scott Barlowe, Jing Yang, Donald J. Jacobs, Dennis R. Livesay, Jamal Alsakran, Ye Zhao, Deeptak Verma, James Mottonen:
A visual analytics approach to exploring protein flexibility subspaces. PacificVis 2013: 193-200 - 2011
- [c2]Luis C. González, Dennis R. Livesay, Donald J. Jacobs:
Improving protein flexibility predictions by combining statistical sampling with a mean-field virtual Pebble Game. BCB 2011: 294-298 - 2008
- [c1]Scott Barlowe, Tianyi Zhang, Yujie Liu, Jing Yang, Donald J. Jacobs:
Multivariate visual explanation for high dimensional datasets. IEEE VAST 2008: 147-154
Informal and Other Publications
- 2022
- [i1]John Patterson, Chris S. Avery, Tyler Grear, Donald J. Jacobs:
Biased Hypothesis Formation From Projection Pursuit. CoRR abs/2201.00889 (2022)
Coauthor Index
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