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ORCIDM. Stanley Fujimoto
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Journal Articles
- 2017
[j6]M. Stanley Fujimoto, Anton Suvorov
, Nicholas O. Jensen, Mark J. Clement, Quinn Snell, Seth M. Bybee:
The OGCleaner: filtering false-positive homology clusters. Bioinform. 33(1): 125-127 (2017)- 2016
- [j5]Paul M. Bodily, M. Stanley Fujimoto, Quinn Snell, Dan Ventura, Mark J. Clement:
ScaffoldScaffolder: solving contig orientation via bidirected to directed graph reduction. Bioinform. 32(1): 17-24 (2016) - [j4]M. Stanley Fujimoto, Anton Suvorov, Nicholas O. Jensen, Mark J. Clement, Seth M. Bybee:
Detecting false positive sequence homology: a machine learning approach. BMC Bioinform. 17: 101 (2016) - [j3]Paul M. Bodily, M. Stanley Fujimoto, Justin T. Page, Mark J. Clement, Mark T. W. Ebbert, Perry G. Ridge:
A novel approach for multi-SNP GWAS and its application in Alzheimer's disease. BMC Bioinform. 17(S-7): 268 (2016) - 2015
- [j2]Paul M. Bodily, M. Stanley Fujimoto, Cameron Ortega, Nozomu Okuda, Jared C. Price, Mark J. Clement, Quinn Snell:
Heterozygous genome assembly via binary classification of homologous sequence. BMC Bioinform. 16(S-7): S5 (2015) - 2014
- [j1]M. Stanley Fujimoto, Paul M. Bodily, Nozomu Okuda, Mark J. Clement, Quinn Snell:
Effects of error-correction of heterozygous next-generation sequencing data. BMC Bioinform. 15(S-7): S3 (2014)
Conference and Workshop Papers
- 2022
- [c10]Eric Burdett, Stanley Fujimoto, Timothy Brown, Ammon Shurtz, Daniel Segrera, Lawry Sorenson, Mark J. Clement, Joseph Price:
Active Transfer Learning for Handwriting Recognition. ICFHR 2022: 245-258 - 2021
- [c9]Elizabeth Soper, Stanley Fujimoto, Yen-Yun Yu:
BART for Post-Correction of OCR Newspaper Text. W-NUT 2021: 284-290 - 2020
- [c8]M. Stanley Fujimoto, Cole A. Lyman, Mark J. Clement:
Kcollections: A Fast and Efficient Library for K-mers. IPDPS Workshops 2020: 193-198 - 2018
- [c7]Tanner D. Jensen, Kristi A. Bresciano, Emma Dallon, M. Stanley Fujimoto, Cole A. Lyman, Enoch Stewart, Joel Griffitts, Mark J. Clement:
The PepSeq Pipeline: Software for Antimicrobial Motif Discovery in Randomly-Generated Peptide Libraries. BCB 2018: 139-144 - 2017
- [c6]Masaki Stanley Fujimoto, Paul M. Bodily, Cole A. Lyman, Andrew J. Jacobsen, Quinn Snell, Mark J. Clement:
Modeling Global and local Codon Bias with Deep Language Models. BIBE 2017: 151-156 - [c5]M. Stanley Fujimoto, Cole A. Lyman, Anton Suvorov, Paul M. Bodily, Quinn Snell, Keith A. Crandall, Seth M. Bybee, Mark J. Clement:
Genome Polymorphism Detection Through Relaxed de Bruijn Graph Construction. BIBE 2017: 212-216 - [c4]Cole A. Lyman, M. Stanley Fujimoto, Anton Suvorov, Paul M. Bodily, Quinn Snell, Keith A. Crandall, Seth M. Bybee, Mark J. Clement:
Whole Genome Phylogenetic Tree Reconstruction Using Colored de Bruijn Graphs. BIBE 2017: 260-265 - 2014
- [c3]Paul M. Bodily, Mark J. Clement, Quinn Snell, M. Stanley Fujimoto, Perry G. Ridge:
Haplotype-centered mapping for improved alignments and genetic association studies. BCB 2014: 499-505 - [c2]Matthew Seeley, Mark J. Clement, Christophe G. Giraud-Carrier, Quinn Snell, Paul M. Bodily, Stanley Fujimoto:
A structured approach to ensemble learning for Alzheimer's disease prediction. BCB 2014: 605-606 - 2013
- [c1]Paul M. Bodily, Mark J. Clement, Quinn Snell, Jared C. Price, Stanley Fujimoto, Nozomu Okuda:
Application of a MAX-CUT Heuristic to the Contig Orientation Problem in Genome Assembly. BCB 2013: 476
Informal and Other Publications
- 2017
- [i1]Cole A. Lyman, M. Stanley Fujimoto, Anton Suvorov, Paul M. Bodily, Quinn Snell, Keith A. Crandall, Seth M. Bybee, Mark J. Clement:
Whole Genome Phylogenetic Tree Reconstruction Using Colored de Bruijn Graphs. CoRR abs/1709.00164 (2017)
Coauthor Index
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