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2020 – today
- 2023
[j13]Bárbara Zita Peters Couto
, Nicholas Robertson, Ellis Patrick, Shila Ghazanfar:
MoleculeExperiment enables consistent infrastructure for molecule-resolved spatial omics data in bioconductor. Bioinform. 39(9) (2023)- [j12]Xiaohang Fu, Ellis Patrick, Jean Y. H. Yang, David Dagan Feng, Jinman Kim:
Deep multimodal graph-based network for survival prediction from highly multiplexed images and patient variables. Comput. Biol. Medicine 154: 106576 (2023) - 2022
- [j11]Nicolas P. Canete, Sourish S. Iyengar, John T. Ormerod, Heeva Baharlou, Andrew N. Harman, Ellis Patrick:
spicyR: spatial analysis of in situ cytometry data in R. Bioinform. 38(11): 3099-3105 (2022) - [j10]Yue Cao, Yingxin Lin, Ellis Patrick, Pengyi Yang, Jean Yee Hwa Yang:
scFeatures: multi-view representations of single-cell and spatial data for disease outcome prediction. Bioinform. 38(20): 4745-4753 (2022) - [j9]Kevin Y. X. Wang, Gulietta M. Pupo, Varsha Tembe, Ellis Patrick, Dario Strbenac, Sarah-Jane Schramm, John F. Thompson, Richard A. Scolyer, Samuel Müller, Garth Tarr, Graham J. Mann, Jean Yee Hwa Yang:
Cross-Platform Omics Prediction procedure: a statistical machine learning framework for wider implementation of precision medicine. npj Digit. Medicine 5 (2022) - 2021
- [j8]Heeva Baharlou, Nicolas P. Canete, Kirstie M. Bertram, Kerrie J. Sandgren, Anthony Cunningham, Andrew N. Harman, Ellis Patrick:
AFid: a tool for automated identification and exclusion of autofluorescent objects from microscopy images. Bioinform. 37(4): 559-567 (2021) - 2020
- [j7]Ellis Patrick, Mariko Taga, Ayla Ergün, Bernard Ng, William Casazza, Maria Cimpean, Christina Yung, Julie A. Schneider, David A. Bennett, Chris Gaiteri, Philip L. De Jager, Elizabeth M. Bradshaw, Sara Mostafavi:
Deconvolving the contributions of cell-type heterogeneity on cortical gene expression. PLoS Comput. Biol. 16(8) (2020)
2010 – 2019
- 2019
- [j6]Shila Ghazanfar, Dario Strbenac, John T. Ormerod, Jean Yee Hwa Yang, Ellis Patrick:
DCARS: differential correlation across ranked samples. Bioinform. 35(5): 823-829 (2019) - 2015
- [j5]Ellis Patrick, Michael J. Buckley, Samuel Müller, David M. Lin, Jean Yee Hwa Yang:
Inferring data-specific micro-RNA function through the joint ranking of micro-RNA and pathways from matched micro-RNA and gene expression data. Bioinform. 31(17): 2822-2828 (2015) - 2014
- [j4]Pengyi Yang, Ellis Patrick, Shi-Xiong Tan, Daniel J. Fazakerley, James G. Burchfield, Christopher Gribben, Matthew J. Prior, David E. James, Yee Hwa Yang:
Direction pathway analysis of large-scale proteomics data reveals novel features of the insulin action pathway. Bioinform. 30(6): 808-814 (2014) - [j3]Ross Sparks, Ellis Patrick:
Detection of Multiple Outbreaks Using Spatio-Temporal EWMA-Ordered Statistics. Commun. Stat. Simul. Comput. 43(10): 2678-2701 (2014) - 2013
- [j2]Ellis Patrick, Michael J. Buckley, Yee Hwa Yang:
Estimation of data-specific constitutive exons with RNA-Seq data. BMC Bioinform. 14: 31 (2013) - [j1]Ellis Patrick, Michael J. Buckley, David M. Lin, Yee Hwa Yang:
Improved moderation for gene-wise variance estimation in RNA-Seq via the exploitation of external information. BMC Genom. 14(S-1): S9 (2013)
Coauthor Index
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