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David Gomez-Cabrero
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Journal Articles
- 2023
- [j15]Sumeer Ahmad Khan, Alberto Maillo, Vincenzo Lagani
, Robert Lehmann
, Narsis A. Kiani
, David Gomez-Cabrero, Jesper Tegnér
:
Reusability report: Learning the transcriptional grammar in single-cell RNA-sequencing data using transformers. Nat. Mac. Intell. 5(12): 1437-1446 (2023) - [j14]Xabier Martinez-de-morentin, Sumeer Ahmad Khan, Robert Lehmann, Sally Sisi Qu, Alberto Maillo, Narsis A. Kiani, Felipe Prósper, Jesper Tegnér
, David Gomez-Cabrero:
LIBRA: an adaptative integrative tool for paired single-cell multi-omics data. Quant. Biol. 11(3): 246-259 (2023) - 2020
- [j13]Ewoud Ewing
, Nuria Planell-Picola, Maja Jagodic, David Gomez-Cabrero:
GeneSetCluster: a tool for summarizing and integrating gene-set analysis results. BMC Bioinform. 21(1): 443 (2020) - 2019
- [j12]Camden Jansen, Ricardo N. Ramirez
, Nicole C. El-Ali, David Gomez-Cabrero, Jesper Tegnér
, Matthias Merkenschlager
, Ana Conesa
, Ali Mortazavi
:
Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps. PLoS Comput. Biol. 15(11) (2019) - 2017
- [j11]Maria Needhamsen
, Ewoud Ewing, Harald Lund
, David Gomez-Cabrero
, Robert Adam Harris
, Lara Kular
, Maja Jagodic:
Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies. BMC Bioinform. 18(1): 486 (2017) - 2016
- [j10]Lavanya Kannan, Marcel Ramos
, Angela Re
, Nehme Hachem
, Zhaleh Safikhani, Deena M. A. Gendoo, Sean R. Davis, David Gomez-Cabrero
, Robert Castelo
, Kasper D. Hansen, Vincent J. Carey, Martin Morgan
, Aedín C. Culhane
, Benjamin Haibe-Kains
, Levi Waldron
:
Public data and open source tools for multi-assay genomic investigation of disease. Briefings Bioinform. 17(4): 603-615 (2016) - [j9]Ákos Tényi, Pedro de Atauri
, David Gomez-Cabrero
, Isaac Cano
, Kim Clarke, Francesco Falciani, Marta Cascante, Josep Roca
, Dieter Maier:
ChainRank, a chain prioritisation method for contextualisation of biological networks. BMC Bioinform. 17: 17 (2016) - [j8]David Gomez-Cabrero
, Jörg Menche
, Claudia Vargas, Isaac Cano
, Dieter Maier, Albert-László Barabási, Jesper Tegnér, Josep Roca
:
From comorbidities of chronic obstructive pulmonary disease to identification of shared molecular mechanisms by data integration. BMC Bioinform. 17(1): 23-35 (2016) - [j7]Vincenzo Lagani, Argyro D. Karozou, David Gomez-Cabrero
, Gilad Silberberg
, Ioannis Tsamardinos:
Erratum to: A comparative evaluation of data-merging and meta-analysis methods for reconstructing gene-gene interactions. BMC Bioinform. 17: 290 (2016) - [j6]Vincenzo Lagani, Argyro D. Karozou, David Gomez-Cabrero
, Gilad Silberberg
, Ioannis Tsamardinos:
A comparative evaluation of data-merging and meta-analysis methods for reconstructing gene-gene interactions. BMC Bioinform. 17(S-5): S194 (2016) - 2015
- [j5]Frida Danielsson, Tojo James, David Gomez-Cabrero
, Mikael Huss
:
Assessing the consistency of public human tissue RNA-seq data sets. Briefings Bioinform. 16(6): 941-949 (2015) - 2014
- [j4]David Gomez-Cabrero
, Imad Abugessaisa
, Dieter Maier, Andrew E. Teschendorff, Matthias Merkenschlager
, Andreas Gisel
, Esteban Ballestar
, Erik Bongcam-Rudloff, Ana Conesa
, Jesper Tegnér:
Data integration in the era of omics: current and future challenges. BMC Syst. Biol. 8(S-2): I1 (2014) - [j3]Rafael Hernández-de-Diego
, Noemi Boix-Chova, David Gomez-Cabrero
, Jesper Tegnér, Imad Abugessaisa
, Ana Conesa
:
STATegra EMS: an Experiment Management System for complex next-generation omics experiments. BMC Syst. Biol. 8(S-2): S9 (2014) - 2013
- [j2]Andrew E. Teschendorff, Francesco Marabita
, Matthias Lechner, Thomas E. Bartlett
, Jesper Tegnér, David Gomez-Cabrero
, Stephan Beck:
A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data. Bioinform. 29(2): 189-196 (2013) - 2011
- [j1]Cristian Taccioli
, Vincenza Maselli, Jesper Tegnér, David Gomez-Cabrero
, Gioia Altobelli
, Warren Emmett, Francesco Lescai
, Stefano Gustincich
, Elia Stupka
:
ParkDB: a Parkinson's disease gene expression database. Database J. Biol. Databases Curation 2011 (2011)
Conference and Workshop Papers
- 2023
- [c2]Srijith Radhakrishnan, Chao-Han Huck Yang, Sumeer Ahmad Khan, Rohit Kumar, Narsis A. Kiani, David Gomez-Cabrero, Jesper Tegnér
:
Whispering LLaMA: A Cross-Modal Generative Error Correction Framework for Speech Recognition. EMNLP 2023: 10007-10016 - [c1]Srijith Radhakrishnan, Chao-Han Huck Yang, Sumeer Ahmad Khan, Narsis A. Kiani, David Gomez-Cabrero, Jesper N. Tegnér
:
A Parameter-Efficient Learning Approach to Arabic Dialect Identification with Pre-Trained General-Purpose Speech Model. INTERSPEECH 2023: 1958-1962
Informal and Other Publications
- 2023
- [i3]Srijith Radhakrishnan, Chao-Han Huck Yang, Sumeer Ahmad Khan, Narsis Aftab Kiani, David Gomez-Cabrero, Jesper N. Tegnér:
A Parameter-Efficient Learning Approach to Arabic Dialect Identification with Pre-Trained General-Purpose Speech Model. CoRR abs/2305.11244 (2023) - [i2]Srijith Radhakrishnan, Chao-Han Huck Yang, Sumeer Ahmad Khan, Rohit Kumar, Narsis A. Kiani, David Gomez-Cabrero, Jesper N. Tegnér:
Whispering LLaMA: A Cross-Modal Generative Error Correction Framework for Speech Recognition. CoRR abs/2310.06434 (2023) - 2018
- [i1]Rise Ooi, Chao-Han Huck Yang, Pin-Yu Chen, Víctor M. Eguíluz, Narsis Aftab Kiani, Hector Zenil, David Gomez-Cabrero, Jesper Tegnér:
Controllability, Multiplexing, and Transfer Learning in Networks using Evolutionary Learning. CoRR abs/1811.05592 (2018)
Coauthor Index
aka: Jesper N. Tegnér
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