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Edmon Begoli
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Journal Articles
- 2023
- [j10]Maria Mahbub
, Edmon Begoli, Susana B. Martins, Alina Peluso, Suzanne Tamang
, Gregory D. Peterson
:
cpgQA: A Benchmark Dataset for Machine Reading Comprehension Tasks on Clinical Practice Guidelines and a Case Study Using Transfer Learning. IEEE Access 11: 3691-3705 (2023) - [j9]Jun Wen
, Xiang Zhang, Everett Neil Rush
, Vidul Ayakulangara Panickan
, Xingyu Li, Tianrun Cai, Doudou Zhou, Yuk-Lam Ho, Lauren Costa, Edmon Begoli, Chuan Hong, J. Michael Gaziano, Kelly Cho, Junwei Lu
, Katherine P. Liao, Marinka Zitnik, Tianxi Cai:
Multimodal representation learning for predicting molecule-disease relations. Bioinform. 39(2) (2023) - 2022
- [j8]Maria Mahbub
, Sudarshan Srinivasan, Edmon Begoli, Gregory D. Peterson:
BioADAPT-MRC: adversarial learning-based domain adaptation improves biomedical machine reading comprehension task. Bioinform. 38(18): 4369-4379 (2022) - 2021
- [j7]Chuan Hong
, Everett Neil Rush
, Molei Liu, Doudou Zhou, Jiehuan Sun, Aaron Sonabend W.
, Victor M. Castro
, Petra Schubert
, Vidul Ayakulangara Panickan
, Tianrun Cai, Lauren Costa, Zeling He, Nicholas B. Link
, Ronald G. Hauser, J. Michael Gaziano, Shawn N. Murphy
, George Ostrouchov
, Yuk-Lam Ho
, Edmon Begoli, Junwei Lu, Kelly Cho, Katherine P. Liao, Tianxi Cai
:
Clinical knowledge extraction via sparse embedding regression (KESER) with multi-center large scale electronic health record data. npj Digit. Medicine 4 (2021) - [j6]Edmon Begoli, Tyler Akidau, Slava Chernyak, Fabian Hueske, Kathryn Knight, Kenneth L. Knowles, Daniel Mills, Dan Sotolongo:
Watermarks in Stream Processing Systems: Semantics and Comparative Analysis of Apache Flink and Google Cloud Dataflow. Proc. VLDB Endow. 14(12): 3135-3147 (2021) - 2020
- [j5]Dongfang Xu
, Manoj Gopale, Jiacheng Zhang
, Kris Brown, Edmon Begoli, Steven Bethard
:
Unified Medical Language System resources improve sieve-based generation and Bidirectional Encoder Representations from Transformers (BERT)-based ranking for concept normalization. J. Am. Medical Informatics Assoc. 27(10): 1510-1519 (2020) - [j4]Alexander S. Rich, Cynthia Rudin, David M. P. Jacoby, Robin Freeman, Oliver R. Wearn, Henry Shevlin, Kanta Dihal, Seán S. ÓhÉigeartaigh, James Butcher, Marco Lippi, Przemyslaw Palka, Paolo Torroni
, Shannon Wongvibulsin, Edmon Begoli, Gisbert Schneider, Stephen Cave, Mona Sloane, Emanuel Moss, Iyad Rahwan, Ken Goldberg, David Howard, Luciano Floridi, Jack Stilgoe:
AI reflections in 2019. Nat. Mach. Intell. 2(1): 2-9 (2020) - 2019
- [j3]Franco van Wyk, Anahita Khojandi, Akram Mohammed
, Edmon Begoli
, Robert L. Davis, Rishikesan Kamaleswaran
:
A minimal set of physiomarkers in continuous high frequency data streams predict adult sepsis onset earlier. Int. J. Medical Informatics 122: 55-62 (2019) - [j2]Edmon Begoli, Tanmoy Bhattacharya
, Dimitri Kusnezov:
The need for uncertainty quantification in machine-assisted medical decision making. Nat. Mach. Intell. 1(1): 20-23 (2019) - 2017
- [j1]Edmon Begoli
, Vincent Schlegel, Michael Francis Atiyah, Praise Adeyemo, Tim Baarslag
:
The Heidelberg Laureate Forum on the moving frontier between mathematics and computer science. XRDS 23(3): 46-49 (2017)
Conference and Workshop Papers
- 2023
- [c25]Edmon Begoli
, Edmon Meyer
, Pablo Moriano
, Sean Oesch
:
Poster: Cognitive Cyber - Dynamic, Adaptive Cyber Defense Systems for Massively Distributed, Autonomous, and Ad-hoc Computing Environments. DEBS 2023: 177-179 - [c24]Edmon Begoli
:
Poster: StreamToxWatch - Data Poisoning Detector in Distributed, Event-based Environments. DEBS 2023: 182-184 - 2022
- [c23]Edmon Begoli, Sudarshan Srinivasan, Maria Mahbub:
Improving Efficiency and Robustness of Transformer-based Information Retrieval Systems. SIGIR 2022: 3433-3435 - 2021
- [c22]Edmon Begoli, Seung-Hwan Lim, Sudarshan Srinivasan:
Performance Profile of Transformer Fine-Tuning in Multi-GPU Cloud Environments. IEEE BigData 2021: 3095-3100 - [c21]Edmon Begoli, Ian Goethert, Kathryn Knight
:
A Lakehouse Architecture for the Management and Analysis of Heterogeneous Data for Biomedical Research and Mega-biobanks. IEEE BigData 2021: 4643-4651 - [c20]Sudarshan Srinivasan, Edmon Begoli, Maria Mahbub, Kathryn Knight
:
Nomen est Omen - The Role of Signatures in Ascribing Email Author Identity with Transformer Neural Networks. SP (Workshops) 2021: 291-297 - 2020
- [c19]Edmon Begoli, Sudarshan Srinivasan, Maria Mahbub:
The Transformers for Polystores - The Next Frontier for Polystore Research. Poly/DMAH@VLDB 2020: 72-77 - 2019
- [c18]Edmon Begoli
, Tyler Akidau, Fabian Hueske, Julian Hyde, Kathryn Knight
, Kenneth L. Knowles:
One SQL to Rule Them All - an Efficient and Syntactically Idiomatic Approach to Management of Streams and Tables. SIGMOD Conference 2019: 1757-1772 - 2018
- [c17]Edmon Begoli
, Kris Brown, Sudarshan Srinivas, Suzanne Tamang:
SynthNotes: A Generator Framework for High-volume, High-fidelity Synthetic Mental Health Notes. IEEE BigData 2018: 951-958 - [c16]Benjamin Mayer, Joshua Arnold, Edmon Begoli
, Everett Neil Rush
, Michael Drewry, Kris Brown, Eduardo Ponce, Sudarshan Srinivas:
Evaluating Text Analytic Frameworks for Mental Health Surveillance. ICDE Workshops 2018: 39-47 - [c15]Michael Bowie, Edmon Begoli
, Byung H. Park:
Improving Quality of Observational Streaming Medical Data by Using Long Short-Term Memory Networks (LSTMs). ICDE Workshops 2018: 48-53 - [c14]Edmon Begoli
, Jesús Camacho-Rodríguez, Julian Hyde, Michael J. Mior
, Daniel Lemire:
Apache Calcite: A Foundational Framework for Optimized Query Processing Over Heterogeneous Data Sources. SIGMOD Conference 2018: 221-230 - 2017
- [c13]Ashwin Kumar Vajantri, Kunwar Deep Singh Toor, Edmon Begoli
, Jack Bates:
An apache calcite-based polystore variation for federated querying of heterogeneous healthcare sources. IEEE BigData 2017: 3221-3227 - [c12]Michael Bowie, Edmon Begoli, Byung H. Park, Jeevith Bopaiah:
Towards an LSTM-based Approach for Detection of Temporally Anomalous Data in Medical Datasets. ICIQ 2017 - [c11]Edmon Begoli
, James Blair Christian, Vijay Gadepally, Stavros Papadopoulos:
An Emerging Role for Polystores in Precision Medicine. DMAH@VLDB 2017: 41-52 - 2016
- [c10]Edmon Begoli
, Derek Kistler, Jack Bates:
Towards a heterogeneous, polystore-like data architecture for the US Department of Veteran Affairs (VA) enterprise analytics. IEEE BigData 2016: 2550-2554 - [c9]Edmon Begoli
, Ted Dunning
, Charlie Frasure:
Real-Time Discovery Services over Large, Heterogeneous and Complex Healthcare Datasets Using Schema-Less, Column-Oriented Methods. BigDataService 2016: 257-264 - 2015
- [c8]Troy Baer, Paul Peltz Jr., Junqi Yin
, Edmon Begoli
:
Integrating apache spark into PBS-Based HPC environments. XSEDE 2015: 34:1-34:7 - 2013
- [c7]Edmon Begoli
, Cristi L. Ogle, David F. Cihak
, Bruce J. MacLennan:
Towards an Integrative Computational Foundation for Applied Behavior Analysis in Early Autism Interventions. AIED 2013: 888-891 - [c6]Seung-Hwan Lim, James L. Horey, Yanjun Yao, Edmon Begoli
, Qing Cao:
Performance Implications from Sizing a VM on Multi-core Systems: A Data Analytic Application's View. IPDPS Workshops 2013: 1001-1008 - [c5]Edmon Begoli
, Theodore F. Chila, William H. Inmon:
Scenario-driven architecture assessment methodology for large data analysis systems. SysCon 2013: 51-55 - 2012
- [c4]James L. Horey, Edmon Begoli, Raghul Gunasekaran, Seung-Hwan Lim, James J. Nutaro:
Big Data Platforms as a Service: Challenges and Approach. HotCloud 2012 - [c3]Edmon Begoli
:
Architectures and platforms for knowledge discovery from data: workshop at WICSA/ECSA 2012. WICSA/ECSA Companion Volume 2012: 167-168 - [c2]Edmon Begoli
:
A short survey on the state of the art in architectures and platforms for large scale data analysis and knowledge discovery from data. WICSA/ECSA Companion Volume 2012: 177-183 - [c1]Edmon Begoli
, James L. Horey:
Design Principles for Effective Knowledge Discovery from Big Data. WICSA/ECSA 2012: 215-218
Editorship
- 2017
- [e1]Edmon Begoli, Fusheng Wang, Gang Luo:
Data Management and Analytics for Medicine and Healthcare - Third International Workshop, DMAH 2017, Held at VLDB 2017, Munich, Germany, September 1, 2017, Proceedings. Lecture Notes in Computer Science 10494, Springer 2017, ISBN 978-3-319-67185-7 [contents]
Informal and Other Publications
- 2023
- [i8]Farhin Farhad Riya, Shahinul Hoque, Md. Saif Hassan Onim
, Edward Michaud, Edmon Begoli:
Effects of Real-Life Traffic Sign Alteration on YOLOv7- an Object Recognition Model. CoRR abs/2305.05499 (2023) - [i7]Maria Mahbub, Ian Goethert, Ioana Danciu, Kathryn Knight, Sudarshan Srinivasan, Suzanne Tamang, Karine Rozenberg-Ben-Dror, Hugo Solares, Susana B. Martins, Edmon Begoli, Gregory D. Peterson:
Question-Answering System Extracts Information on Injection Drug Use from Clinical Progress Notes. CoRR abs/2305.08777 (2023) - 2022
- [i6]Maria Mahbub, Sudarshan Srinivasan, Edmon Begoli, Gregory D. Peterson:
BioADAPT-MRC: Adversarial Learning-based Domain Adaptation Improves Biomedical Machine Reading Comprehension Task. CoRR abs/2202.13174 (2022) - 2021
- [i5]Jeremiah Duncan, Fabian Fallas, Chris Gropp, Emily Herron, Maria Mahbub, Paula Olaya, Eduardo Ponce, Tabitha K. Samuel, Daniel Schultz, Sudarshan Srinivasan, Maofeng Tang, Viktor Zenkov, Quan Zhou, Edmon Begoli:
The Sensitivity of Word Embeddings-based Author Detection Models to Semantic-preserving Adversarial Perturbations. CoRR abs/2102.11917 (2021) - [i4]Edmon Begoli, Robert A. Bridges, Sean Oesch, Kathryn Knight
:
What Clinical Trials Can Teach Us about the Development of More Resilient AI for Cybersecurity. CoRR abs/2105.06545 (2021) - 2019
- [i3]Edmon Begoli, Tyler Akidau, Fabian Hueske, Julian Hyde, Kathryn Knight
, Kenneth L. Knowles:
One SQL to Rule Them All. CoRR abs/1905.12133 (2019) - 2018
- [i2]Edmon Begoli, Jesús Camacho-Rodríguez, Julian Hyde, Michael J. Mior, Daniel Lemire:
Apache Calcite: A Foundational Framework for Optimized Query Processing Over Heterogeneous Data Sources. CoRR abs/1802.10233 (2018) - [i1]Edmon Begoli, Jim Brase, Bambi DeLaRosa, Penelope Jones, Dimitri Kusnezov, Jason Paragas, Rick Stevens, Frederick H. Streitz, Georgia D. Tourassi:
Precision Medicine as an Accelerator for Next Generation Cognitive Supercomputing. CoRR abs/1804.11002 (2018)
Coauthor Index
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