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Journal Articles
- 2024
[j9]Marwan Abdellah
, Alessandro Foni, Juan Jose Garcia-Cantero, Nadir Román Guerrero, Elvis Boci, Adrien Fleury, Jay S. Coggan, Daniel Keller, Judit Planas, Jean-Denis Courcol, Georges Khazen:
Synthesis of geometrically realistic and watertight neuronal ultrastructure manifolds for in silico modeling. Briefings Bioinform. 25(5) (2024)- 2023
- [j8]Marwan Abdellah, Juan Jose Garcia-Cantero, Nadir Román Guerrero, Alessandro Foni, Jay S. Coggan, Corrado Calì, Marco Agus, Eleftherios Zisis, Daniel Keller, Markus Hadwiger, Pierre J. Magistretti, Henry Markram, Felix Schürmann:
Ultraliser: a framework for creating multiscale, high-fidelity and geometrically realistic 3D models for in silico neuroscience. Briefings Bioinform. 24(1) (2023) - 2021
- [j7]Marwan Abdellah, Alessandro Foni, Eleftherios Zisis, Nadir Román Guerrero, Samuel Lapere, Jay S. Coggan, Daniel Keller, Henry Markram, Felix Schürmann:
Metaball skinning of synthetic astroglial morphologies into realistic mesh models for in silico simulations and visual analytics. Bioinform. 37(Supplement): 426-433 (2021) - 2020
- [j6]Marwan Abdellah, Nadir Román Guerrero, Samuel Lapere, Jay S. Coggan, Daniel Keller, Benoit Coste, Snigdha Dagar, Jean-Denis Courcol, Henry Markram, Felix Schürmann:
Interactive visualization and analysis of morphological skeletons of brain vasculature networks with VessMorphoVis. Bioinform. 36(Supplement-1): i534-i541 (2020) - 2018
- [j5]Marwan Abdellah, Juan Hernando, Stefan Eilemann, Samuel Lapere, Nicolas Antille, Henry Markram, Felix Schürmann:
NeuroMorphoVis: a collaborative framework for analysis and visualization of neuronal morphology skeletons reconstructed from microscopy stacks. Bioinform. 34(13): i574-i582 (2018) - 2017
- [j4]Marwan Abdellah, Juan Hernando, Nicolas Antille, Stefan Eilemann, Henry Markram, Felix Schürmann:
Reconstruction and visualization of large-scale volumetric models of neocortical circuits for physically-plausible in silico optical studies. BMC Bioinform. 18(S-10): 39-50 (2017) - [j3]Marwan Abdellah, Ahmet Bilgili, Stefan Eilemann, Julian C. Shillcock, Henry Markram, Felix Schürmann:
Bio-physically plausible visualization of highly scattering fluorescent neocortical models for in silico experimentation. BMC Bioinform. 18(S-2): 62:1-62:14 (2017) - 2015
- [j2]Marwan Abdellah, Ahmet Bilgili, Stefan Eilemann, Henry Markram, Felix Schürmann:
Physically-based in silico light sheet microscopy for visualizing fluorescent brain models. BMC Bioinform. 16(S11): S8 (2015) - [j1]Marwan Abdellah, Ayman M. Eldeib, Amr Sharawi:
High Performance GPU-Based Fourier Volume Rendering. Int. J. Biomed. Imaging 2015: 590727:1-590727:13 (2015)
Conference and Workshop Papers
- 2019
- [c11]Marwan Abdellah, Cyrille Favreau, Juan Hernando, Samuel Lapere, Felix Schürmann:
Generating High Fidelity Surface Meshes of Neocortical Neurons using Skin Modifiers. CGVC 2019: 45-53 - [c10]Jonas Karlsson, Marwan Abdellah, Sébastien Speierer, Alessandro Foni, Samuel Lapere, Felix Schürmann:
High Fidelity Visualization of Large Scale Digitally Reconstructed Brain Circuitry with Signed Distance Functions. IEEE VIS (Short Papers) 2019: 176-180 - 2017
- [c9]Stefan Eilemann, Marwan Abdellah, Nicolas Antille, Ahmet Bilgili, Grigory Chevtchenko, Raphael Dumusc, Cyrille Favreau, Juan Hernando, Daniel Nachbaur, Pawel Podhajski, Jafet Villafranca, Felix Schürmann:
From Big Data to Big Displays High-Performance Visualization at Blue Brain. ISC Workshops 2017: 662-675 - 2016
- [c8]Marwan Abdellah, Asem Abdelaziz, Eslam Ali, Sherief Abdelaziz, Abdel Rahman Sayed, Mohamed I. Owis, Ayman M. Eldeib:
Parallel generation of digitally reconstructed radiographs on heterogeneous multi-GPU workstations. EMBC 2016: 3953-3956 - [c7]Marwan Abdellah, Mohamed Abdallah, Mohamed Alzanati, Ayman M. Eldeib:
Efficient rendering of digitally reconstructed radiographs on heterogeneous computing architectures using central slice theorem. EMBC 2016: 3957-3960 - [c6]Marwan Abdellah, Ahmet Bilgili, Stefan Eilemann, Henry Markram, Felix Schürmann:
Physically-based Rendering of Highly Scattering Fluorescent Solutions using Path Tracing. Eurographics (Posters) 2016: 17-18 - 2015
- [c5]Marwan Abdellah, Ayman M. Eldeib, Mohamed I. Owis:
Accelerating DRR generation using Fourier slice theorem on the GPU. EMBC 2015: 4238-4241 - [c4]Marwan Abdellah, Ayman M. Eldeib, Mohamed I. Owis:
GPU acceleration for digitally reconstructed radiographs using bindless texture objects and CUDA/OpenGL interoperability. EMBC 2015: 4242-4245 - [c3]Marwan Abdellah, Ahmet Bilgili, Stefan Eilemann, Henry Markram, Felix Schürmann:
A Computational Model of Light-Sheet Fluorescence Microscopy using Physically-based Rendering. Eurographics (Posters) 2015: 15-16 - 2014
- [c2]Marwan Abdellah:
cufftShift: high performance CUDA-accelerated FFT-shift library. SpringSim (HPS) 2014: 5 - 2012
- [c1]Stefan Eilemann, Ahmet Bilgili, Marwan Abdellah, Juan Hernando, Maxim Makhinya, Renato Pajarola, Felix Schürmann:
Parallel Rendering on Hybrid Multi-GPU Clusters. EGPGV@Eurographics 2012: 109-117
Informal and Other Publications
- 2017
- [i2]Marwan Abdellah, Ahmet Bilgili, Stefan Eilemann, Henry Markram, Felix Schürmann:
A Physically Plausible Model for Rendering Highly Scattering Fluorescent Participating Media. CoRR abs/1706.03024 (2017) - [i1]Stefan Eilemann, Marwan Abdellah, Nicolas Antille, Ahmet Bilgili, Grigory Chevtchenko, Raphael Dumusc, Cyrille Favreau, Juan Hernando, Daniel Nachbaur, Pawel Podhajski, Jafet Villafranca, Felix Schürmann:
From Big Data to Big Displays: High-Performance Visualization at Blue Brain. CoRR abs/1706.10098 (2017)
Coauthor Index
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