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Rasmus Agren
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Journal Articles
- 2018
- [j8]Hao Wang
, Simonas Marcisauskas
, Benjamín J. Sánchez
, Iván Domenzain
, Daniel Hermansson, Rasmus Agren, Jens Nielsen
, Eduard J. Kerkhoven
:
RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor. PLoS Comput. Biol. 14(10) (2018) - 2015
- [j7]Stepan Tymoshenko, Rebecca D. Oppenheim, Rasmus Agren, Jens Nielsen
, Dominique Soldati-Favre
, Vassily Hatzimanikatis
:
Metabolic Needs and Capabilities of Toxoplasma gondii through Combined Computational and Experimental Analysis. PLoS Comput. Biol. 11(5) (2015) - 2013
- [j6]Rasmus Agren, Liming Liu, Saeed Shoaie
, Wanwipa Vongsangnak, Intawat Nookaew, Jens Nielsen
:
The RAVEN Toolbox and Its Use for Generating a Genome-scale Metabolic Model for Penicillium chrysogenum. PLoS Comput. Biol. 9(3) (2013) - 2012
- [j5]Luis Caspeta
, Saeed Shoaie
, Rasmus Agren, Intawat Nookaew, Jens Nielsen
:
Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in silico evaluation of their potentials. BMC Syst. Biol. 6: 24 (2012) - [j4]Rasmus Agren, Sergio Bordel
, Adil Mardinoglu, Natapol Pornputtapong
, Intawat Nookaew, Jens Nielsen
:
Reconstruction of Genome-Scale Active Metabolic Networks for 69 Human Cell Types and 16 Cancer Types Using INIT. PLoS Comput. Biol. 8(5) (2012) - 2011
- [j3]Stephan Pabinger
, Robert Rader, Rasmus Agren, Jens Nielsen, Zlatko Trajanoski:
MEMOSys: Bioinformatics platform for genome-scale metabolic models. BMC Syst. Biol. 5: 20 (2011) - 2010
- [j2]Marija Cvijovic, Roberto Olivares-Hernández
, Rasmus Agren, Niklas Dahr, Wanwipa Vongsangnak, Intawat Nookaew, Kiran Raosaheb Patil
, Jens Nielsen
:
BioMet Toolbox: genome-wide analysis of metabolism. Nucleic Acids Res. 38(Web-Server-Issue): 144-149 (2010) - [j1]Sergio Bordel
, Rasmus Agren, Jens Nielsen
:
Sampling the Solution Space in Genome-Scale Metabolic Networks Reveals Transcriptional Regulation in Key Enzymes. PLoS Comput. Biol. 6(7) (2010)
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