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2020 – today
- 2022
[j34]Adrià Casamitjana
, Marco Lorenzi, Sebastiano Ferraris, Loïc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren, Juan Eugenio Iglesias:
Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas. Medical Image Anal. 75: 102265 (2022)- [j33]Alessia Atzeni, Loïc Peter, Eleanor D. Robinson, Emily Blackburn, Juri Althonayan, Daniel C. Alexander, Juan Eugenio Iglesias:
Deep active learning for suggestive segmentation of biomedical image stacks via optimisation of Dice scores and traced boundary length. Medical Image Anal. 81: 102549 (2022) - [j32]Adrià Casamitjana, Juan Eugenio Iglesias:
High-resolution atlasing and segmentation of the subcortex: Review and perspective on challenges and opportunities created by machine learning. NeuroImage 263: 119616 (2022) - [j31]Nalini M. Singh, Jordan B. Harrod, Sandya Subramanian, Mitchell Robinson, Ken Chang, Suheyla Cetin Karayumak, Adrian Vasile Dalca, Simon Eickhoff, Michael Fox, Loraine Franke, Polina Golland, Daniel Haehn, Juan Eugenio Iglesias, Lauren J. O'Donnell, Yangming Ou, Yogesh Rathi, Shan H. Siddiqi, Haoqi Sun, M. Brandon Westover, Susan L. Whitfield-Gabrieli, Randy L. Gollub:
How Machine Learning is Powering Neuroimaging to Improve Brain Health. Neuroinformatics 20(4): 943-964 (2022) - [j30]Malte Hoffmann, Benjamin Billot, Douglas N. Greve, Juan Eugenio Iglesias, Bruce Fischl, Adrian V. Dalca:
SynthMorph: Learning Contrast-Invariant Registration Without Acquired Images. IEEE Trans. Medical Imaging 41(3): 543-558 (2022) - [c44]Junshen Xu, Daniel Moyer, Patricia Ellen Grant, Polina Golland, Juan Eugenio Iglesias, Elfar Adalsteinsson:
SVoRT: Iterative Transformer for Slice-to-Volume Registration in Fetal Brain MRI. MICCAI (6) 2022: 3-13 - [c43]Benjamin Billot, Colin G. Magdamo, Steven E. Arnold, Sudeshna Das, Juan Eugenio Iglesias:
Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and No Retraining. MICCAI (5) 2022: 538-548 - [c42]Andrew Hoopes, Juan Eugenio Iglesias, Bruce Fischl, Douglas N. Greve, Adrian V. Dalca:
TopoFit: Rapid Reconstruction of Topologically-Correct Cortical Surfaces. MIDL 2022: 508-520 - [c41]Sean I. Young, Yaël Balbastre, Adrian V. Dalca, William M. Wells III, Juan Eugenio Iglesias, Bruce Fischl:
SuperWarp: Supervised Learning and Warping on U-Net for Invariant Subvoxel-Precise Registration. WBIR 2022: 103-115 - [i27]Sean I. Young, Adrian V. Dalca, Enzo Ferrante, Polina Golland, Bruce Fischl, Juan Eugenio Iglesias:
SUD: Supervision by Denoising for Medical Image Segmentation. CoRR abs/2202.02952 (2022) - [i26]Juan Eugenio Iglesias, Riana Schleicher, Sonia Laguna, Benjamin Billot, Pamela Schaefer, Brenna McKaig, Joshua N. Goldstein, Kevin N. Sheth, Matthew S. Rosen, W. Taylor Kimberly:
Accurate super-resolution low-field brain MRI. CoRR abs/2202.03564 (2022) - [i25]Benjamin Billot, Colin G. Magdamo, Sean E. Arnold, Sudeshna Das, Juan Eugenio Iglesias:
Robust Segmentation of Brain MRI in the Wild with Hierarchical CNNs and no Retraining. CoRR abs/2203.01969 (2022) - [i24]Sean I. Young, Yaël Balbastre, Adrian V. Dalca, William M. Wells III, Juan Eugenio Iglesias, Bruce Fischl:
SuperWarp: Supervised Learning and Warping on U-Net for Invariant Subvoxel-Precise Registration. CoRR abs/2205.07399 (2022) - [i23]Junshen Xu, Daniel Moyer, Patricia Ellen Grant, Polina Golland, Juan Eugenio Iglesias, Elfar Adalsteinsson:
SVoRT: Iterative Transformer for Slice-to-Volume Registration in Fetal Brain MRI. CoRR abs/2206.10802 (2022) - [i22]Benjamin Billot, Colin G. Magdamo, Steven E. Arnold, Sudeshna Das, Juan Eugenio Iglesias:
Robust machine learning segmentation for large-scale analysis of heterogeneous clinical brain MRI datasets. CoRR abs/2209.02032 (2022) - [i21]Hongwei Bran Li, Chinmay Prabhakar, Suprosanna Shit, Johannes C. Paetzold, Tamaz Amiranashvili, Jianguo Zhang, Daniel Rueckert, Juan Eugenio Iglesias, Benedikt Wiestler, Bjoern H. Menze:
A Domain-specific Perceptual Metric via Contrastive Self-supervised Representation: Applications on Natural and Medical Images. CoRR abs/2212.01577 (2022) - 2021
- [j29]Donatas Sederevicius, Dídac Vidal-Piñeiro, Øystein Sørensen, Koenraad Van Leemput, Juan Eugenio Iglesias, Adrian V. Dalca, Douglas N. Greve, Bruce Fischl, Atle Bjørnerud, Kristine B. Walhovd, Anders M. Fjell:
Reliability and sensitivity of two whole-brain segmentation approaches included in FreeSurfer - ASEG and SAMSEG. NeuroImage 237: 118113 (2021) - [j28]Juan Eugenio Iglesias, Benjamin Billot, Yaël Balbastre, Azadeh Tabari, John Conklin, R. Gilberto González, Daniel C. Alexander, Polina Golland, Brian L. Edlow, Bruce Fischl:
Joint super-resolution and synthesis of 1 mm isotropic MP-RAGE volumes from clinical MRI exams with scans of different orientation, resolution and contrast. NeuroImage 237: 118206 (2021) - [j27]Douglas N. Greve, Benjamin Billot, Devani Cordero, Andrew Hoopes, Malte Hoffmann, Adrian V. Dalca, Bruce Fischl, Juan Eugenio Iglesias, Jean C. Augustinack:
A deep learning toolbox for automatic segmentation of subcortical limbic structures from MRI images. NeuroImage 244: 118610 (2021) - [j26]Chao J. Liu, William Ammon, Viviana Siless, Morgan Fogarty, Ruopeng Wang, Alessia Atzeni, Iman Aganj, Juan Eugenio Iglesias, Lilla Zöllei, Bruce Fischl, Jeremy D. Schmahmann, Hui Wang:
Quantification of volumetric morphometry and optical property in the cortex of human cerebellum at micrometer resolution. NeuroImage 244: 118627 (2021) - [j25]Loïc Peter, Daniel C. Alexander, Caroline Magnain, Juan Eugenio Iglesias:
Uncertainty-Aware Annotation Protocol to Evaluate Deformable Registration Algorithms. IEEE Trans. Medical Imaging 40(8): 2053-2065 (2021) - [c40]Malte Hoffmann, Benjamin Billot, Juan Eugenio Iglesias, Bruce Fischl, Adrian V. Dalca:
Learning Mri Contrast-Agnostic Registration. ISBI 2021: 899-903 - [c39]Benjamin Billot, Stefano Cerri, Koen Van Leemput, Adrian V. Dalca, Juan Eugenio Iglesias:
Joint Segmentation Of Multiple Sclerosis Lesions And Brain Anatomy In MRI Scans Of Any Contrast And Resolution With CNNs. ISBI 2021: 1971-1974 - [c38]Adrià Casamitjana, Matteo Mancini, Juan Eugenio Iglesias:
Synth-by-Reg (SbR): Contrastive Learning for Synthesis-Based Registration of Paired Images. SASHIMI@MICCAI 2021: 44-54 - [i20]Loïc Peter, Daniel C. Alexander, Caroline Magnain, Juan Eugenio Iglesias:
Uncertainty-Aware Annotation Protocol to Evaluate Deformable Registration Algorithms. CoRR abs/2104.01217 (2021) - [i19]Adrià Casamitjana, Marco Lorenzi, Sebastiano Ferraris, Loïc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren, Juan Eugenio Iglesias:
Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas. CoRR abs/2104.14873 (2021) - [i18]Benjamin Billot, Douglas N. Greve, Oula Puonti, Axel Thielscher, Koen Van Leemput, Bruce Fischl, Adrian V. Dalca, Juan Eugenio Iglesias:
SynthSeg: Domain Randomisation for Segmentation of Brain MRI Scans of any Contrast and Resolution. CoRR abs/2107.09559 (2021) - [i17]Adrià Casamitjana, Matteo Mancini, Juan Eugenio Iglesias:
Synth-by-Reg (SbR): Contrastive learning for synthesis-based registration of paired images. CoRR abs/2107.14449 (2021) - 2020
- [d1]Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
DeepReg: a deep learning toolkit for medical image registration. J. Open Source Softw. 5(55): 2705 (2020) - [j24]Emma M. Brown, Meghan E. Pierce, Dustin C. Clark, Bruce R. Fischl, Juan Eugenio Iglesias, William P. Milberg, Regina E. McGlinchey, David H. Salat:
Test-retest reliability of FreeSurfer automated hippocampal subfield segmentation within and across scanners. NeuroImage 210: 116563 (2020) - [j23]Lilla Zöllei, Juan Eugenio Iglesias, Yangming Ou, Patricia Ellen Grant, Bruce Fischl:
Infant FreeSurfer: An automated segmentation and surface extraction pipeline for T1-weighted neuroimaging data of infants 0-2 years. NeuroImage 218: 116946 (2020) - [j22]Benjamin Billot, Martina Bocchetta, Emily Todd, Adrian V. Dalca, Jonathan D. Rohrer, Juan Eugenio Iglesias:
Automated segmentation of the hypothalamus and associated subunits in brain MRI. NeuroImage 223: 117287 (2020) - [c37]Iman Aganj, Aina Frau-Pascual, Juan Eugenio Iglesias, Anastasia Yendiki, Jean C. Augustinack, David H. Salat, Bruce Fischl:
Compensatory Brain Connection Discovery in Alzheimer's Disease. ISBI 2020: 283-287 - [c36]Benjamin Billot, Eleanor D. Robinson, Adrian V. Dalca, Juan Eugenio Iglesias:
Partial Volume Segmentation of Brain MRI Scans of Any Resolution and Contrast. MICCAI (7) 2020: 177-187 - [c35]Henry F. J. Tregidgo, Adrià Casamitjana, Caitlin Latimer, Mitchell Kilgore, Eleanor D. Robinson, Emily Blackburn, Koen Van Leemput, Bruce Fischl, Adrian V. Dalca, Christine L. Mac Donald, Dirk Keene, Juan Eugenio Iglesias:
3D Reconstruction and Segmentation of Dissection Photographs for MRI-Free Neuropathology. MICCAI (5) 2020: 204-214 - [c34]Benjamin Billot, Douglas N. Greve, Koen Van Leemput, Bruce Fischl, Juan Eugenio Iglesias, Adrian V. Dalca:
A Learning Strategy for Contrast-agnostic MRI Segmentation. MIDL 2020: 75-93 - [c33]Evan M. Yu, Juan Eugenio Iglesias, Adrian V. Dalca, Mert R. Sabuncu:
An Auto-Encoder Strategy for Adaptive Image Segmentation. MIDL 2020: 881-891 - [i16]Benjamin Billot, Douglas N. Greve, Koen Van Leemput, Bruce Fischl, Juan Eugenio Iglesias, Adrian V. Dalca:
A Learning Strategy for Contrast-agnostic MRI Segmentation. CoRR abs/2003.01995 (2020) - [i15]Benjamin Billot, Eleanor D. Robinson, Adrian V. Dalca, Juan Eugenio Iglesias:
Partial Volume Segmentation of Brain MRI Scans of any Resolution and Contrast. CoRR abs/2004.10221 (2020) - [i14]Malte Hoffmann, Benjamin Billot, Juan Eugenio Iglesias, Bruce Fischl, Adrian V. Dalca:
Learning Multi-Modal Image Registration without Real Data. CoRR abs/2004.10282 (2020) - [i13]Evan M. Yu, Juan Eugenio Iglesias, Adrian V. Dalca, Mert R. Sabuncu:
An Auto-Encoder Strategy for Adaptive Image Segmentation. CoRR abs/2004.13903 (2020) - [i12]Nalini M. Singh, Juan Eugenio Iglesias, Elfar Adalsteinsson, Adrian V. Dalca, Polina Golland:
Joint Frequency- and Image-Space Learning for Fourier Imaging. CoRR abs/2007.01441 (2020) - [i11]Henry F. J. Tregidgo, Adria Casamitjana, Caitlin Latimer, Mitchell Kilgore, Eleanor D. Robinson, Emily Blackburn, Koen Van Leemput, Bruce Fischl, Adrian V. Dalca, Christine L. Mac Donald, Dirk Keene, Juan Eugenio Iglesias:
3D Reconstruction and Segmentation of Dissection Photographs for MRI-free Neuropathology. CoRR abs/2009.05596 (2020) - [i10]Yunguan Fu, Nina Montaña Brown, Shaheer U. Saeed, Adrià Casamitjana, Zachary M. C. Baum, Rémi Delaunay, Qianye Yang, Alexander Grimwood, Zhe Min, Stefano B. Blumberg, Juan Eugenio Iglesias, Dean C. Barratt, Ester Bonmati, Daniel C. Alexander, Matthew J. Clarkson, Tom Vercauteren, Yipeng Hu:
DeepReg: a deep learning toolkit for medical image registration. CoRR abs/2011.02580 (2020) - [i9]Juan Eugenio Iglesias, Benjamin Billot, Yaël Balbastre, Azadeh Tabari, John Conklin, Daniel C. Alexander, Polina Golland, Brian L. Edlow, Bruce Fischl:
Joint super-resolution and synthesis of 1 mm isotropic MP-RAGE volumes from clinical MRI exams with scans of different orientation, resolution and contrast. CoRR abs/2012.13340 (2020) - [i8]Loïc Peter, Marcel Tella-Amo, Dzhoshkun Ismail Shakir, Jan Deprest, Sébastien Ourselin, Juan Eugenio Iglesias, Tom Vercauteren:
Active Annotation of Informative Overlapping Frames in Video Mosaicking Applications. CoRR abs/2012.15343 (2020)
2010 – 2019
- 2019
- [c32]Juan Eugenio Iglesias, Koen Van Leemput, Polina Golland, Anastasia Yendiki:
Joint Inference on Structural and Diffusion MRI for Sequence-Adaptive Bayesian Segmentation of Thalamic Nuclei with Probabilistic Atlases. IPMI 2019: 767-779 - [c31]Matteo Mancini, Shauna Crampsie, David L. Thomas, Zane Jaunmuktane, Janice L. Holton, Juan Eugenio Iglesias:
Hierarchical Joint Registration of Tissue Blocks With Soft Shape Constraints For Large-Scale Histology of The Human Brain. ISBI 2019: 666-669 - [c30]Adrian V. Dalca, Evan M. Yu, Polina Golland, Bruce Fischl, Mert R. Sabuncu, Juan Eugenio Iglesias:
Unsupervised Deep Learning for Bayesian Brain MRI Segmentation. MICCAI (3) 2019: 356-365 - [i7]Stephen Morrell, Zbigniew Wojna, Can Son Khoo, Sébastien Ourselin, Juan Eugenio Iglesias:
Large-scale mammography CAD with Deformable Conv-Nets. CoRR abs/1902.07323 (2019) - [i6]Juan Eugenio Iglesias, Koen Van Leemput, Polina Golland, Anastasia Yendiki:
Joint inference on structural and diffusion MRI for sequence-adaptive Bayesian segmentation of thalamic nuclei with probabilistic atlases. CoRR abs/1903.04352 (2019) - [i5]Adrian V. Dalca, Evan M. Yu, Polina Golland, Bruce Fischl, Mert R. Sabuncu, Juan Eugenio Iglesias:
Unsupervised deep learning for Bayesian brain MRI segmentation. CoRR abs/1904.11319 (2019) - 2018
- [j21]Ignacio Arganda-Carreras, Tudor Manoliu, Nicolas Mazuras, Florian Schulze, Juan Eugenio Iglesias, Katja Bühler, Arnim Jenett, François Rouyer, Philippe Andrey:
A Statistically Representative Atlas for Mapping Neuronal Circuits in the Drosophila Adult Brain. Frontiers Neuroinformatics 12: 13 (2018) - [j20]Jonas Pichat, Juan Eugenio Iglesias, Tarek A. Yousry, Sébastien Ourselin, Marc Modat:
A Survey of Methods for 3D Histology Reconstruction. Medical Image Anal. 46: 73-105 (2018) - [j19]Juan Eugenio Iglesias, Marc Modat, Loïc Peter, Allison Stevens, Roberto Annunziata, Tom Vercauteren, Ed Lein, Bruce Fischl, Sébastien Ourselin:
Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections. Medical Image Anal. 50: 127-144 (2018) - [j18]Sebastiano Ferraris, Johannes L. van der Merwe, Lennart Van Der Veeken, Ferran Prados, Juan Eugenio Iglesias, Andrew Melbourne, Marco Lorenzi, Marc Modat, Willy Gsell, Jan Deprest, Tom Vercauteren:
A magnetic resonance multi-atlas for the neonatal rabbit brain. NeuroImage 179: 187-198 (2018) - [j17]Juan Eugenio Iglesias, Ricardo Insausti, Garikoitz Lerma-Usabiaga, Martina Bocchetta, Koen Van Leemput, Douglas N. Greve, André J. W. van der Kouwe, Bruce Fischl, César Caballero-Gaudes, Pedro M. Paz-Alonso:
A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology. NeuroImage 183: 314-326 (2018) - [c29]Stephen Morrell, Zbigniew Wojna, Can Son Khoo, Sébastien Ourselin, Juan Eugenio Iglesias:
Large-Scale Mammography CAD with Deformable Conv-Nets. RAMBO+BIA+TIA@MICCAI 2018: 64-72 - [c28]Juan Eugenio Iglesias, Marco Lorenzi, Sebastiano Ferraris, Loïc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren:
Model-Based Refinement of Nonlinear Registrations in 3D Histology Reconstruction. MICCAI (2) 2018: 147-155 - [c27]Alessia Atzeni, Marnix Jansen, Sébastien Ourselin, Juan Eugenio Iglesias:
A Probabilistic Model Combining Deep Learning and Multi-atlas Segmentation for Semi-automated Labelling of Histology. MICCAI (2) 2018: 219-227 - [c26]Marcel Tella-Amo, Loïc Peter, Dzhoshkun I. Shakir, Jan Deprest, Danail Stoyanov, Juan Eugenio Iglesias, Tom Vercauteren, Sébastien Ourselin:
Technical note: probabilistic visual and electromagnetic data fusion for robust drift-free sequential mosaicking. Application to fetoscopy. Medical Imaging: Image-Guided Procedures 2018: 105760I - [i4]Juan Eugenio Iglesias, Marc Modat, Loïc Peter, Allison Stevens, Roberto Annunziata, Tom Vercauteren, Ed Lein, Bruce Fischl, Sébastien Ourselin:
Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections. CoRR abs/1801.05284 (2018) - [i3]Juan Eugenio Iglesias, Ricardo Insausti, Garikoitz Lerma-Usabiaga, Martina Bocchetta, Koen Van Leemput, Douglas N. Greve, André J. W. van der Kouwe, Bruce Fischl, César Caballero-Gaudes, Pedro M. Paz-Alonso:
A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology. CoRR abs/1806.08634 (2018) - 2017
- [j16]Iman Aganj, Juan Eugenio Iglesias, Martin Reuter, Mert Rory Sabuncu, Bruce Fischl:
Mid-space-independent deformable image registration. NeuroImage 152: 158-170 (2017) - [j15]Zeynep M. Saygin, Dorit Kliemann, Juan Eugenio Iglesias, André J. W. van der Kouwe, Ellen Boyd, Martin Reuter, Allison Stevens, Koenraad Van Leemput, Alexis McKee, Matthew P. Frosch, Bruce Fischl, Jean C. Augustinack:
High-resolution magnetic resonance imaging reveals nuclei of the human amygdala: manual segmentation to automatic atlas. NeuroImage 155: 370-382 (2017) - [c25]Jonas Pichat, Juan Eugenio Iglesias, Sotiris Nousias, Tarek A. Yousry:
Part-to-Whole Registration of Histology and MRI Using Shape Elements. ICCV Workshops 2017: 107-115 - [c24]Juan Eugenio Iglesias:
Globally Optimal Coupled Surfaces for Semi-automatic Segmentation of Medical Images. IPMI 2017: 610-621 - [c23]Juan Eugenio Iglesias, Sebastiano Ferraris, Marc Modat, Willy Gsell, Jan Deprest, Johannes L. van der Merwe, Tom Vercauteren:
Template-Free Estimation of Intracranial Volume: A Preterm Birth Animal Model Study. FIFI/OMIA@MICCAI 2017: 3-13 - [c22]Juan Eugenio Iglesias, Garikoitz Lerma-Usabiaga, Luis C. García-Peraza-Herrera, Sara Martinez, Pedro M. Paz-Alonso:
Retrospective Head Motion Estimation in Structural Brain MRI with 3D CNNs. MICCAI (2) 2017: 314-322 - [i2]Jonas Pichat, Juan Eugenio Iglesias, Sotiris Nousias, Tarek A. Yousry, Sébastien Ourselin, Marc Modat:
Part-to-whole Registration of Histology and MRI using Shape Elements. CoRR abs/1708.08117 (2017) - 2016
- [j14]Christopher D. Whelan, Derrek P. Hibar, Laura S. van Velzen, Anthony S. Zannas, Tania Carrillo-Roa, Katie McMahon, Gautam Prasad, Sinead Kelly, Joshua Faskowitz, Greig I. de Zubicaray, Juan Eugenio Iglesias, Theo G. M. van Erp, Thomas Frodl, Nicholas G. Martin, Margaret J. Wright, Neda Jahanshad, Lianne Schmaal, Philipp G. Sämann, Paul M. Thompson:
Heritability and reliability of automatically segmented human hippocampal formation subregions. NeuroImage 128: 125-137 (2016) - [j13]Juan Eugenio Iglesias, Koen Van Leemput, Jean Augustinack, Ricardo Insausti, Bruce Fischl, Martin Reuter:
Bayesian longitudinal segmentation of hippocampal substructures in brain MRI using subject-specific atlases. NeuroImage 141: 542-555 (2016) - [j12]Oula Puonti, Juan Eugenio Iglesias, Koen Van Leemput:
Fast and sequence-adaptive whole-brain segmentation using parametric Bayesian modeling. NeuroImage 143: 235-249 (2016) - [c21]Juan Eugenio Iglesias, Pedro M. Paz-Alonso, Garikoitz Lerma-Usabiaga, Ricardo Insausti, Karla L. Miller, César Caballero-Gaudes:
Simultaneous Bayesian correction of slab boundary artifacts and bias field for high resolution ex vivo MRI. ISBI 2016: 1384-1387 - [c20]Ben Glocker, Ender Konukoglu, Ioannis Lavdas, Juan Eugenio Iglesias, Eric O. Aboagye, Andrea G. Rockall, Daniel Rueckert:
Correction of Fat-Water Swaps in Dixon MRI. MICCAI (3) 2016: 536-543 - 2015
- [j11]Juan Eugenio Iglesias, Mert R. Sabuncu:
Multi-atlas segmentation of biomedical images: A survey. Medical Image Anal. 24(1): 205-219 (2015) - [j10]Juan Eugenio Iglesias, Mert Rory Sabuncu, Iman Aganj, Priyanka Bhatt, Christen Casillas, David H. Salat, Adam L. Boxer, Bruce Fischl, Koen Van Leemput:
An algorithm for optimal fusion of atlases with different labeling protocols. NeuroImage 106: 451-463 (2015) - [j9]Paul A. Yushkevich, Robert S. C. Amaral, Jean C. Augustinack, Andrew R. Bender, Jeffrey D. Bernstein, Marina Boccardi, Martina Bocchetta, Alison C. Burggren, Valerie A. Carr, M. Mallar Chakravarty, Gaël Chételat, Ana M. Daugherty, Lila Davachi, Song-Lin Ding, Arne D. Ekstrom, Mirjam I. Geerlings, Abdul Hassan, Yushan Huang, Juan Eugenio Iglesias, Renaud La Joie, Geoffrey A. Kerchner, Karen F. LaRocque, Laura A. Libby, Nikolai Malykhin, Susanne G. Mueller, Rosanna K. Olsen, Daniela J. Palombo, Mansi B. Parekh:
Quantitative comparison of 21 protocols for labeling hippocampal subfields and parahippocampal subregions in in vivo MRI: Towards a harmonized segmentation protocol. NeuroImage 111: 526-541 (2015) - [j8]Juan Eugenio Iglesias, Koen Van Leemput, Priyanka Bhatt, Christen Casillas, Shubir Dutt, Norbert Schuff, Diana Truran-Sacrey, Adam L. Boxer, Bruce Fischl:
Bayesian segmentation of brainstem structures in MRI. NeuroImage 113: 184-195 (2015) - [j7]Juan Eugenio Iglesias, Jean C. Augustinack, Khoa Nguyen, Christopher M. Player, Allison Player, Michelle Wright, Nicole Roy, Matthew P. Frosch, Ann C. McKee, Lawrence L. Wald, Bruce Fischl, Koen Van Leemput:
A computational atlas of the hippocampal formation using ex vivo, ultra-high resolution MRI: Application to adaptive segmentation of in vivo MRI. NeuroImage 115: 117-137 (2015) - [c19]Iman Aganj, Juan Eugenio Iglesias, Martin Reuter, Mert R. Sabuncu, Bruce Fischl:
Mid-Space-Independent Symmetric Data Term for Pairwise Deformable Image Registration. MICCAI (2) 2015: 263-271 - 2014
- [c18]Christian Thode Larsen, Juan Eugenio Iglesias, Koen Van Leemput:
N3 Bias Field Correction Explained as a Bayesian Modeling Method. BAMBI 2014: 1-12 - [i1]Juan Eugenio Iglesias, Mert Rory Sabuncu:
Multi-Atlas Segmentation of Biomedical Images: A Survey. CoRR abs/1412.3421 (2014) - 2013
- [j6]Juan Eugenio Iglesias, Mert R. Sabuncu, Koen Van Leemput:
Improved inference in Bayesian segmentation using Monte Carlo sampling: Application to hippocampal subfield volumetry. Medical Image Anal. 17(7): 766-778 (2013) - [j5]Juan Eugenio Iglesias, Mert Rory Sabuncu, Koen Van Leemput:
A unified framework for cross-modality multi-atlas segmentation of brain MRI. Medical Image Anal. 17(8): 1181-1191 (2013) - [j4]Cheng-Yi Liu, Juan Eugenio Iglesias, Zhuowen Tu:
Deformable Templates Guided Discriminative Models for Robust 3D Brain MRI Segmentation. Neuroinformatics 11(4): 447-468 (2013) - [c17]Juan Eugenio Iglesias, Mert R. Sabuncu, Koen Van Leemput:
A Probabilistic, Non-parametric Framework for Inter-modality Label Fusion. MICCAI (3) 2013: 576-583 - [c16]Juan Eugenio Iglesias, Ender Konukoglu, Darko Zikic, Ben Glocker, Koen Van Leemput, Bruce Fischl:
Is Synthesizing MRI Contrast Useful for Inter-modality Analysis? MICCAI (1) 2013: 631-638 - [c15]Oula Puonti, Juan Eugenio Iglesias, Koen Van Leemput:
Fast, Sequence Adaptive Parcellation of Brain MR Using Parametric Models. MICCAI (1) 2013: 727-734 - 2012
- [j3]Juan Eugenio Iglesias, Paul M. Thompson, Cheng-Yi Liu, Zhuowen Tu:
Fast Approximate Stochastic Tractography. Neuroinformatics 10(1): 5-17 (2012) - [c14]Juan Eugenio Iglesias, Mert R. Sabuncu, Koen Van Leemput:
A generative model for multi-atlas segmentation across modalities. ISBI 2012: 888-891 - [c13]Juan Eugenio Iglesias, Mert R. Sabuncu, Koen Van Leemput:
Incorporating Parameter Uncertainty in Bayesian Segmentation Models: Application to Hippocampal Subfield Volumetry. MICCAI (3) 2012: 50-57 - [c12]Juan Eugenio Iglesias, Mert R. Sabuncu, Koen Van Leemput:
A Generative Model for Probabilistic Label Fusion of Multimodal Data. MBIA 2012: 115-133 - [c11]Cheng-Yi Liu, Juan Eugenio Iglesias, Zhuowen Tu:
Pictorial multi-atlas segmentation of brain MRI. MMBIA 2012: 65-70 - 2011
- [j2]Juan Eugenio Iglesias, Cheng-Yi Liu, Paul M. Thompson, Zhuowen Tu:
Robust Brain Extraction Across Datasets and Comparison With Publicly Available Methods. IEEE Trans. Medical Imaging 30(9): 1617-1634 (2011) - [c10]Juan Eugenio Iglesias, Ender Konukoglu, Albert Montillo, Zhuowen Tu, Antonio Criminisi:
Combining Generative and Discriminative Models for Semantic Segmentation of CT Scans via Active Learning. IPMI 2011: 25-36 - [c9]Albert Montillo, Jamie Shotton, John M. Winn, Juan Eugenio Iglesias, Dimitris N. Metaxas, Antonio Criminisi:
Entangled Decision Forests and Their Application for Semantic Segmentation of CT Images. IPMI 2011: 184-196 - [c8]Juan Eugenio Iglesias, Jiayan Jiang, Cheng-Yi Liu, Zhuowen Tu:
Classification of Alzheimer's Disease Using a Self-Smoothing Operator. MICCAI (3) 2011: 58-65 - [c7]William Speier, Juan Eugenio Iglesias, Leila El-Kara, Zhuowen Tu, Corey W. Arnold:
Robust Skull Stripping of Clinical Glioblastoma Multiforme Data. MICCAI (3) 2011: 659-666 - 2010
- [c6]Cheng-Yi Liu, Juan Eugenio Iglesias, Arthur W. Toga, Zhuowen Tu:
Fusing adaptive atlas and informative features for robust 3D brain image segmentation. ISBI 2010: 848-851 - [c5]Juan Eugenio Iglesias, Paul M. Thompson, Cheng-Yi Liu, Zhuowen Tu:
Discretizing stochastic tractography: a fast implementation. ISBI 2010: 1381-1384 - [c4]Juan Eugenio Iglesias, Ivo D. Dinov, Jaskaran Singh, Gregory Tong, Zhuowen Tu:
Synthetic MRI Signal Standardization: Application to Multi-atlas Analysis. MICCAI (3) 2010: 81-88 - [c3]Juan Eugenio Iglesias, Cheng-Yi Liu, Paul M. Thompson, Zhuowen Tu:
Agreement-Based Semi-supervised Learning for Skull Stripping. MICCAI (3) 2010: 147-154
2000 – 2009
- 2009
- [j1]Juan Eugenio Iglesias, Nico Karssemeijer:
Robust Initial Detection of Landmarks in Film-Screen Mammograms Using Multiple FFDM Atlases. IEEE Trans. Medical Imaging 28(11): 1815-1824 (2009) - [c2]Juan Eugenio Iglesias, Krupa Rocks, Neda Jahanshad, Enrique Frías-Martínez, Lewellyn P. Andrada, Alex A. T. Bui:
Tracking medication information across medical records. AMIA 2009 - 2