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ORCIDTamar Schlick
Person information
- affiliation: New York University, New York, Department of Chemistry, USA
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Journal Articles
- 2021
[j32]Tamar Schlick
, Stephanie Portillo-Ledesma:
Biomolecular modeling thrives in the age of technology. Nat. Comput. Sci. 1(5): 321-331 (2021)- [j31]Tamar Schlick, Stephanie Portillo-Ledesma:
Publisher Correction: Biomolecular modeling thrives in the age of technology. Nat. Comput. Sci. 1(11): 767 (2021) - 2020
- [j30]Grace Meng, Marva Tariq, Swati Jain, Shereef Elmetwaly, Tamar Schlick:
RAG-Web: RNA structure prediction/design using RNA-As-Graphs. Bioinform. 36(2): 647-648 (2020) - 2019
- [j29]Jaewoon Jung, Wataru Nishima, Marcus Daniels, Gavin Bascom, Chigusa Kobayashi, Adetokunbo Adedoyin, Michael E. Wall, Anna Lappala, Dominic Phillips, William Fischer, Chang-Shung Tung, Tamar Schlick, Yuji Sugita, Karissa Y. Sanbonmatsu:
Scaling molecular dynamics beyond 100, 000 processor cores for large-scale biophysical simulations. J. Comput. Chem. 40(21): 1919-1930 (2019) - 2015
- [j28]Bret D. Freudenthal, William A. Beard, Lalith E. Perera, David D. Shock, Taejin Kim, Tamar Schlick, Samuel H. Wilson:
Uncovering the polymerase-induced cytotoxicity of an oxidized nucleotide. Nat. 517(7536): 635-639 (2015) - 2013
- [j27]Yunlang Li, Tamar Schlick:
"Gate-keeper" Residues and Active-Site Rearrangements in DNA Polymerase μ Help Discriminate Non-cognate Nucleotides. PLoS Comput. Biol. 9(5) (2013) - 2012
- [j26]Giulio Quarta, Ken Sin, Tamar Schlick:
Dynamic Energy Landscapes of Riboswitches Help Interpret Conformational Rearrangements and Function. PLoS Comput. Biol. 8(2) (2012) - 2011
- [j25]Joseph A. Izzo, Namhee Kim, Shereef Elmetwaly, Tamar Schlick:
RAG: An Update to the RNA-As-Graphs Resource. BMC Bioinform. 12: 219 (2011) - 2007
- [j24]Namhee Kim, Jin Sup Shin, Shereef Elmetwaly, Hin Hark Gan, Tamar Schlick:
RAGPOOLS: RNA-As-Graph-Pools - a web server for assisting the design of structured RNA pools for in vitro selection. Bioinform. 23(21): 2959-2960 (2007) - 2006
- [j23]Tamar Schlick, Ken A. Dill:
Special Section On Multiscale Modeling In Biology. Multiscale Model. Simul. 5(4): 1174 (2006) - 2004
- [j22]Hin Hark Gan, Daniela Fera, Julie Zorn, Nahum Shiffeldrim, Michael Tang, Uri Laserson, Namhee Kim, Tamar Schlick:
RAG: RNA-As-Graphs database-concepts, analysis, features. Bioinform. 20(8): 1285-1291 (2004) - [j21]Daniela Fera, Namhee Kim, Nahum Shiffeldrim, Julie Zorn, Uri Laserson, Hin Hark Gan, Tamar Schlick:
RAG: RNA-As-Graphs web resource. BMC Bioinform. 5: 88 (2004) - 2003
- [j20]Danny Barash, Linjing Yang, Xiaoliang Qian, Tamar Schlick:
Inherent speedup limitations in multiple time step/particle mesh Ewald algorithms. J. Comput. Chem. 24(1): 77-88 (2003) - [j19]Qing Zhang, Daniel A. Beard, Tamar Schlick:
Constructing irregular surfaces to enclose macromolecular complexes for mesoscale modeling using the discrete surface charge optimization (DISCO) algorithm. J. Comput. Chem. 24(16): 2063-2074 (2003) - [j18]Danny Barash, Tamar Schlick, Moshe Israeli, Ron Kimmel:
Multiplicative Operator Splittings in Nonlinear Diffusion: From Spatial Splitting to Multiple Timesteps. J. Math. Imaging Vis. 19(1): 33-48 (2003) - 2002
- [j17]Dexuan Xie, Tamar Schlick:
A More Lenient Stopping Rule for Line Search Algorithms. Optim. Methods Softw. 17(4): 683-700 (2002) - 2001
- [j16]Xiaoliang Qian, Daniel Strahs, Tamar Schlick:
A new program for optimizing periodic boundary models of solvated biomolecules (PBCAID). J. Comput. Chem. 22(15): 1843-1850 (2001) - 2000
- [j15]Tamar Schlick, Daniel A. Beard, Jing Huang, Daniel Strahs, Xiaoliang Qian:
Computational challenges in simulating large DNA over long times. Comput. Sci. Eng. 2(6): 38-51 (2000) - [j14]Dexuan Xie, Alexander Tropsha, Tamar Schlick:
An Efficient Projection Protocol for Chemical Databases: Singular Value Decomposition Combined with Truncated-Newton Minimization. J. Chem. Inf. Comput. Sci. 40(1): 167-177 (2000) - 1999
- [j13]Dexuan Xie, Tamar Schlick:
Efficient Implementation of the Truncated-Newton Algorithm for Large-Scale Chemistry Applications. SIAM J. Optim. 10(1): 132-154 (1999) - [j12]Dexuan Xie, Tamar Schlick:
Remark on Algorithm 702 - the updated truncated Newton minimization package. ACM Trans. Math. Softw. 25(1): 108-122 (1999) - 1998
- [j11]Leonid Y. Zaslavsky, Tamar Schlick:
An adaptive multigrid technique for evaluating long-range forces in biomolecular simulations. Appl. Math. Comput. 97(2-3): 237-250 (1998) - 1997
- [j10]Robert D. Skeel, Guihua Zhang, Tamar Schlick:
A Family of Symplectic Integrators: Stability, Accuracy, and Molecular Dynamics Applications. SIAM J. Sci. Comput. 18(1): 203-222 (1997) - 1994
- [j9]Philippe Derreumaux, Guihua Zhang, Tamar Schlick, Bernard R. Brooks:
A Truncated Newton Minimizer Adapted for CHARMM and Biomolecular Applications. J. Comput. Chem. 15(5): 532-552 (1994) - [j8]Victoria Z. Averbukh, Samuel Figueroa, Tamar Schlick:
Remark on Algorithm 566. ACM Trans. Math. Softw. 20(3): 282-285 (1994) - 1993
- [j7]Guihua Zhang, Tamar Schlick:
LIN: A new algorithm to simulate the dynamics of biomolecules by combining implicit-integration and normal mode techniques. J. Comput. Chem. 14(10): 1212-1233 (1993) - [j6]X. Zou, Ionel Michael Navon, M. Berger, Paul Kang-Hoh Phua, Tamar Schlick, François-Xavier Le Dimet:
Numerical Experience with Limited-Memory Quasi-Newton and Truncated Newton Methods. SIAM J. Optim. 3(3): 582-608 (1993) - [j5]Tamar Schlick:
Modified Cholesky Factorizations for Sparse Preconditioners. SIAM J. Sci. Comput. 14(2): 424-445 (1993) - 1992
- [j4]Tamar Schlick, Aaron L. Fogelson:
TNPACK - A truncated Newton minimization package for large-scale problems: I. Algorithm and usage. ACM Trans. Math. Softw. 18(1): 46-70 (1992) - [j3]Tamar Schlick, Aaron L. Fogelson:
TNPACK - a truncated Newton minimization package for large-scale problems: II. Implementation examples. ACM Trans. Math. Softw. 18(1): 71-111 (1992) - [j2]Tamar Schlick, Aaron L. Fogelson:
Algorithm 702: TNPACK-a truncated Newton minimization package for large-scale problems: I. Algorithm and usage. ACM Trans. Math. Softw. 18(2): 141 (1992) - 1991
- [j1]Tamar Schlick:
New Approaches to Potential Energy Minimization and Molecular Dynamics Algorithms. Comput. Chem. 15(3): 251-260 (1991)
Conference and Workshop Papers
- 2019
- [c2]Louis Petingi, Tamar Schlick:
Graph-Theoretic Partitioning of RNAs and Classification of Pseudoknots. AlCoB 2019: 68-79 - 2004
- [c1]Uri Laserson, Hin Hark Gan, Tamar Schlick:
Searching for 2D RNA geometries in bacterial genomes. SCG 2004: 373-377
Parts in Books or Collections
- 1999
- [p1]Tamar Schlick:
Some Failures and Successes of Long-Timestep Approaches to Biomolecular Simulations. Computational Molecular Dynamics 1999: 227-262
Informal and Other Publications
- 2016
- [i1]Lei Hua, Yang Song, Namhee Kim, Christian Laing, Jason T. L. Wang, Tamar Schlick:
CHSalign: A Web Server That Builds upon Junction-Explorer and RNAJAG for Pairwise Alignment of RNA Secondary Structures with Coaxial Helical Stacking. CoRR abs/1609.01987 (2016)
Coauthor Index
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