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2020 – today
- 2022
[j13]Wesley Tansey
, Victor Veitch, Haoran Zhang, Raul Rabadan, David M. Blei:
The Holdout Randomization Test for Feature Selection in Black Box Models. J. Comput. Graph. Stat. 31(1): 151-162 (2022)- 2021
- [i6]Michael Bleher, Lukas Hahn, Juan Ángel Patino-Galindo, Mathieu Carrière, Ulrich Bauer, Raul Rabadan, Andreas Ott:
Topology identifies emerging adaptive mutations in SARS-CoV-2. CoRR abs/2106.07292 (2021) - 2020
- [j12]Rose Orenbuch, Ioan Filip, Devon Comito, Jeffrey Shaman, Itsik Pe'er, Raul Rabadan:
arcasHLA: high-resolution HLA typing from RNAseq. Bioinform. 36(1): 33-40 (2020) - [j11]Luis C. Aparicio, Mykola Bordyuh, Andrew J. Blumberg, Raul Rabadan:
A Random Matrix Theory Approach to Denoise Single-Cell Data. Patterns 1(3): 100035 (2020) - [j10]Michael Lesnick, Raúl Rabadán, Daniel I. S. Rosenbloom:
Quantifying Genetic Innovation: Mathematical Foundations for the Topological Study of Reticulate Evolution. SIAM J. Appl. Algebra Geom. 4(1): 141-184 (2020) - [c8]Andrew Aukerman, Mathieu Carrière, Chao Chen, Kevin Gardner, Raúl Rabadán, Rami Vanguri:
Persistent Homology Based Characterization of the Breast Cancer Immune Microenvironment: A Feasibility Study. SoCG 2020: 11:1-11:20 - [i5]Andrew J. Blumberg, Mathieu Carrière, Michael A. Mandell, Raul Rabadan, Soledad Villar:
MREC: a fast and versatile framework for aligning and matching point clouds with applications to single cell molecular data. CoRR abs/2001.01666 (2020)
2010 – 2019
- 2019
- [j9]Floris P. Barthel, Kevin C. Johnson, Frederick S. Varn, Anzhela D. Moskalik, Georgette Tanner, Emre Kocakavuk, Kevin J. Anderson, Olajide Abiola, Kenneth D. Aldape, Kristin D. Alfaro, Donat Alpar, Samirkumar B. Amin, David M. Ashley, Pratiti Bandopadhayay, Jill S. Barnholtz-Sloan, Rameen Beroukhim, Christoph Bock, Priscilla K. Brastianos, Daniel J. Brat, Andrew R. Brodbelt, Alexander F. Bruns, Ketan R. Bulsara, Aruna Chakrabarty, Arnab Chakravarti, Jeffrey H. Chuang, Elizabeth B. Claus, Elizabeth J. Cochran, Jennifer Connelly, Joseph F. Costello, Gaetano Finocchiaro, Michael N. Fletcher, Pim J. French, Hui K. Gan, Mark R. Gilbert, Peter V. Gould, Matthew R. Grimmer, Antonio Iavarone, Azzam Ismail, Michael D. Jenkinson, Mustafa Khasraw, Hoon Kim, Mathilde C. M. Kouwenhoven, Peter S. LaViolette, Meihong Li, Peter Lichter, Keith L. Ligon, Allison K. Lowman, Tathiane M. Malta, Tali Mazor, Kerrie L. McDonald, Annette M. Molinaro, Do-Hyun Nam, Naema Nayyar, Ho Keung Ng, Chew Yee Ngan, Simone P. Niclou, Johanna M. Niers, Houtan Noushmehr, Javad Noorbakhsh, D. Ryan Ormond, Chul-Kee Park, Laila M. Poisson, Raul Rabadan, Bernhard Radlwimmer, Ganesh Rao, Guido Reifenberger, Jason K. Sa, Michael Schuster, Brian L. Shaw, Susan C. Short, Peter A. E. Sillevis Smitt, Andrew E. Sloan, Marion Smits, Hiromichi Suzuki, Ghazaleh Tabatabai, Erwin G. Van Meir, Colin Watts, Michael Weller, Pieter Wesseling, Bart A. Westerman, Georg Widhalm, Adelheid Woehrer, W. K. Alfred Yung, Gelareh Zadeh, Jason T. Huse, John F. De Groot, Lucy F. Stead, Roel G. W. Verhaak:
Longitudinal molecular trajectories of diffuse glioma in adults. Nat. 576(7785): 112-120 (2019) - 2018
- [c7]Wesley Tansey, Yixin Wang, David M. Blei, Raul Rabadan:
Black Box FDR. ICML 2018: 4874-4883 - [i4]Michael Lesnick, Raúl Rabadán, Daniel I. S. Rosenbloom:
Quantifying Genetic Innovation: Mathematical Foundations for the Topological Study of Reticulate Evolution. CoRR abs/1804.01398 (2018) - [i3]Wesley Tansey, Yixin Wang, David M. Blei, Raul Rabadan:
Black Box FDR. CoRR abs/1806.03143 (2018) - [i2]Mathieu Carrière, Raul Rabadan:
Topological Data Analysis of Single-cell Hi-C Contact Maps. CoRR abs/1812.01360 (2018) - 2016
- [j8]Pablo G. Cámara, Arnold J. Levine, Raúl Rabadán:
Inference of Ancestral Recombination Graphs through Topological Data Analysis. PLoS Comput. Biol. 12(8) (2016) - [i1]Guido D'Amico, Raul Rabadan, Matthew Kleban:
A Theory of Taxonomy. CoRR abs/1611.03890 (2016) - 2015
- [c6]Kevin J. Emmett, Benjamin Schweinhart, Raul Rabadan:
Multiscale Topology of Chromatin Folding. BICT 2015: 177-180 - [c5]Kevin J. Emmett, Raul Rabadan:
Quantifying Reticulation in Phylogenetic Complexes Using Homology. BICT 2015: 193-196 - [c4]Andrew X. Chen, Raúl Rabadán:
A Fast Semi-Automatic Segmentation Tool for Processing Brain Tumor Images. BIRS-IMLKE 2015: 170-181 - 2014
- [j7]Rachel D. Melamed, Hossein Khiabanian, Raul Rabadan:
Data-driven discovery of seasonally linked diseases from an Electronic Health Records system. BMC Bioinform. 15(S-6): S3 (2014) - [j6]Francesco Abate, Sakellarios Zairis, Elisa Ficarra, Andrea Acquaviva, Chris H. Wiggins, Veronique Frattini, Anna Lasorella, Antonio Iavarone, Giorgio Inghirami, Raul Rabadan:
Pegasus: a comprehensive annotation and prediction tool for detection of driver gene fusions in cancer. BMC Syst. Biol. 8: 97 (2014) - [c3]Sakellarios Zairis, Hossein Khiabanian, Andrew J. Blumberg, Raul Rabadan:
Moduli Spaces of Phylogenetic Trees Describing Tumor Evolutionary Patterns. Brain Informatics and Health 2014: 528-539 - [c2]Kevin J. Emmett, Raul Rabadan:
Characterizing Scales of Genetic Recombination and Antibiotic Resistance in Pathogenic Bacteria Using Topological Data Analysis. Brain Informatics and Health 2014: 540-551 - [c1]Andreas Holzinger, David Blanchard, Marcus D. Bloice, Katharina Holzinger, Vasile Palade, Raul Rabadan:
Darwin, Lamarck, or Baldwin: Applying Evolutionary Algorithms to Machine Learning Techniques. WI-IAT (1) 2014: 449-453 - [p1]Katharina Holzinger, Vasile Palade, Raul Rabadan, Andreas Holzinger:
Darwin or Lamarck? Future Challenges in Evolutionary Algorithms for Knowledge Discovery and Data Mining. Interactive Knowledge Discovery and Data Mining in Biomedical Informatics 2014: 35-56 - 2013
- [j5]Vladimir Trifonov, Laura Pasqualucci, Riccardo Dalla Favera, Raul Rabadan:
MutComFocal: an integrative approach to identifying recurrent and focal genomic alterations in tumor samples. BMC Syst. Biol. 7: 25 (2013) - [j4]Vladimir Trifonov, Laura Pasqualucci, Enrico Tiacci, Brunangelo Falini, Raul Rabadan:
SAVI: a statistical algorithm for variant frequency identification. BMC Syst. Biol. 7(S-2): S2 (2013) - 2012
- [j3]Santiago Vilar, Rave Harpaz, Eugenio Uriarte, Lourdes Santana, Raul Rabadan, Carol Friedman:
Drug-drug interaction through molecular structure similarity analysis. J. Am. Medical Informatics Assoc. 19(6): 1066-1074 (2012) - 2011
- [j2]Santiago Vilar, Rave Harpaz, Herbert S. Chase, Stefano Costanzi, Raul Rabadan, Carol Friedman:
Facilitating adverse drug event detection in pharmacovigilance databases using molecular structure similarity: application to rhabdomyolysis. J. Am. Medical Informatics Assoc. 18(Supplement): 73-80 (2011) - 2010
- [j1]Joseph Chan, Antony Holmes, Raul Rabadan:
Network Analysis of Global Influenza Spread. PLoS Comput. Biol. 6(11) (2010)
Coauthor Index
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