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Kentaro Tomii
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2020 – today
- 2023
- [j14]Yuko Tsuchiya
, Tomoki Yonezawa, Yu Yamamori
, Hiroko Inoura
, Masanori Osawa
, Kazuyoshi Ikeda
, Kentaro Tomii
:
PoSSuM v.3: A Major Expansion of the PoSSuM Database for Finding Similar Binding Sites of Proteins. J. Chem. Inf. Model. 63(23): 7578-7587 (2023) - 2020
- [j13]Hiroyuki Fukuda, Kentaro Tomii
:
DeepECA: an end-to-end learning framework for protein contact prediction from a multiple sequence alignment. BMC Bioinform. 21(1): 10 (2020)
2010 – 2019
- 2019
- [j12]Masashi Tsubaki, Kentaro Tomii
, Jun Sese:
Compound-protein interaction prediction with end-to-end learning of neural networks for graphs and sequences. Bioinform. 35(2): 309-318 (2019) - [r1]Kentaro Tomii:
Protein Properties. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 28-33 - 2018
- [j11]Tsukasa Nakamura
, Kazunori D. Yamada, Kentaro Tomii
, Kazutaka Katoh
:
Parallelization of MAFFT for large-scale multiple sequence alignments. Bioinform. 34(14): 2490-2492 (2018) - 2017
- [j10]Toshiyuki Oda, Kyungtaek Lim, Kentaro Tomii
:
Simple adjustment of the sequence weight algorithm remarkably enhances PSI-BLAST performance. BMC Bioinform. 18(1): 288 (2017) - 2016
- [j9]Kazunori D. Yamada, Kentaro Tomii
, Kazutaka Katoh
:
Application of the MAFFT sequence alignment program to large data - reexamination of the usefulness of chained guide trees. Bioinform. 32(21): 3246-3251 (2016) - 2015
- [j8]Jun-Ichi Ito, Kazuyoshi Ikeda, Kazunori D. Yamada, Kenji Mizuguchi
, Kentaro Tomii
:
PoSSuM v.2.0: data update and a new function for investigating ligand analogs and target proteins of small-molecule drugs. Nucleic Acids Res. 43(Database-Issue): 392-398 (2015) - [j7]Nozomi Nagano
, Naoko Nakayama, Kazuyoshi Ikeda, Masaru Fukuie, Kiyonobu Yokota, Takuo Doi, Tsuyoshi Kato, Kentaro Tomii
:
EzCatDB: the enzyme reaction database, 2015 update. Nucleic Acids Res. 43(Database-Issue): 453-458 (2015) - 2014
- [j6]Kazunori D. Yamada, Kentaro Tomii
:
Revisiting amino acid substitution matrices for identifying distantly related proteins. Bioinform. 30(3): 317-325 (2014) - 2012
- [j5]Kentaro Tomii
, Yoshito Sawada
, Shinya Honda
:
Convergent evolution in structural elements of proteins investigated using cross profile analysis. BMC Bioinform. 13: 11 (2012) - [j4]Jun-Ichi Ito, Yasuo Tabei, Kana Shimizu, Koji Tsuda, Kentaro Tomii
:
PoSSuM: a database of similar protein-ligand binding and putative pockets. Nucleic Acids Res. 40(Database-Issue): 541-548 (2012) - 2011
- [j3]Chie Motono, Junichi Nakata, Ryotaro Koike, Kana Shimizu, Matsuyuki Shirota, Takayuki Amemiya, Kentaro Tomii
, Nozomi Nagano
, Naofumi Sakaya, Kiyotaka Misoo, Miwa Sato, Akinori Kidera, Hidekazu Hiroaki
, Tsuyoshi Shirai
, Kengo Kinoshita, Tamotsu Noguchi, Motonori Ota:
SAHG, a comprehensive database of predicted structures of all human proteins. Nucleic Acids Res. 39(Database-Issue): 487-493 (2011)
2000 – 2009
- 2007
- [j2]Kana Shimizu, Yoichi Muraoka, Shuichi Hirose, Kentaro Tomii
, Tamotsu Noguchi:
Predicting mostly disordered proteins by using structure-unknown protein data. BMC Bioinform. 8 (2007) - 2004
- [j1]Kentaro Tomii
, Yutaka Akiyama
:
FORTE: a profile-profile comparison tool for protein fold recognition. Bioinform. 20(4): 594-595 (2004) - [c1]Tsuyoshi Kato, Koji Tsuda, Kentaro Tomii, Kiyoshi Asai:
A New Variational Framework for Rigid-Body Alignment. SSPR/SPR 2004: 171-179
1990 – 1999
- 1999
- [p1]Kentaro Tomii, Minoru Kanehisa:
Systematic Detection of Protein Structural Motifs. Pattern Discovery in Biomolecular Data 1999: 97-110
Coauthor Index
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