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ORCIDEtienne Z. Gnimpieba
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2020 – today
- 2024
[j7]Etienne Z. Gnimpieba
, Timothy W. Hartman, Tuyen Do, Jessica Zylla, Shiva Aryal, Samuel J. Haas, Diing D. M. Agany, Bichar Dip Shrestha Gurung, Valena Doe, Zelaikha B. Yosufzai, Daniel Pan, Ross Campbell, Victor C. Huber, Rajesh Kumar Sani, Venkataramana Gadhamshetty, Carol Lushbough:
Biofilm marker discovery with cloud-based dockerized metagenomics analysis of microbial communities. Briefings Bioinform. 25(Supplement 1) (2024)- [j6]Ribot Fleury T. Ceskoutsé, Alain Bertrand Bomgni, David R. Gnimpieba Zanfack, Diing D. M. Agany, Thomas Bouétou Bouétou, Etienne Gnimpieba Zohim:
Sub-clustering based recommendation system for stroke patient: Identification of a specific drug class for a given patient. Comput. Biol. Medicine 171: 108117 (2024) - [j5]Ribot Fleury T. Ceskoutsé, Alain Bertrand Bomgni, David R. Gnimpieba Zanfack, Diing D. M. Agany, Thomas Bouétou Bouétou, Etienne Gnimpieba Zohim:
HeteroKGRep: Heterogeneous Knowledge Graph based Drug Repositioning. Knowl. Based Syst. 305: 112638 (2024) - [c30]Alain Bertrand Bomgni, Ribot Fleury Téné Ceskoutsé, Kevin Jordan Njike Njingang, Thomas Bouétou Bouétou, Venkataramana Gadhamshetty, Etienne Gnimpieba Zohim:
AIM-HKR: AI-Driven Molecular Retrosynthesis Using Heterogeneous Knowledge Representations. BIBM 2024: 6887-6892 - [c29]Bichar Dip Shrestha Gurung, Manish Rayamajhi, Anushuya Baidya, Owen Growney, Helena Naomie Dongmo Mafo, Yun-Seok Choi, Etienne Z. Gnimpieba:
Efficient Prediction of Protein-Ligand Binding Using ESM-2 and Mol2vec with Random Forest Model. BIBM 2024: 6893-6895 - [c28]Corey Zhao, Bichar Dip Shrestha Gurung, Timothy W. Hartman, Tuyen Do, Mariah M. Hoffman, Etienne Z. Gnimpieba:
Applying the DeepSeqDock Harmonization Framework on Pseudomonas Aeruginosa Bacterial Biofilm Data. BIBM 2024: 6896-6898 - [c27]Anushuya Baidya, Tuyen Do, Etienne Z. Gnimpieba:
Toward Fine-Tuning Large Language Models in Ontology of Microbial Phenotypes Construction. BIBM 2024: 6913-6920 - [c26]Tuyen Do, Shiva Aryal, Bichar Dip Shrestha Gurung, Diing D. M. Agany, Nick Klein, Ruanbao Zhou, Rajesh Kumar Sani, Etienne Z. Gnimpieba:
NFB-Checker: An AI/ML-Powered Microorganism Nitrogen Fixation Susceptibility Prediction from Gene Collection. BIBM 2024: 6927-6932 - [c25]Md Hasanur Rahman, Bichar Dip Shrestha Gurung, Manoj Tripathi, Alan Dalton, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba:
Enhancing Sulphate Reducing Bacteria Clustering by Implementing UMAP on Raman Spectroscopy Data. BIBM 2024: 6936-6938 - [i3]Sandeep Chataut, Tuyen Do, Bichar Dip Shrestha Gurung, Shiva Aryal, Anup Khanal, Carol Lushbough, Etienne Z. Gnimpieba:
Comparative Study of Domain Driven Terms Extraction Using Large Language Models. CoRR abs/2404.02330 (2024) - [i2]Shiva Aryal, Tuyen Do, Bisesh Heyojoo, Sandeep Chataut, Bichar Dip Shrestha Gurung, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba:
Leveraging Multi-AI Agents for Cross-Domain Knowledge Discovery. CoRR abs/2404.08511 (2024) - 2023
- [j4]Alain Bertrand Bomgni, Garrik Brel Jagho Mdemaya, Hafiz Munsub Ali, David R. Gnimpieba Zanfack, Etienne Z. Gnimpieba:
ESPINA: efficient and secured protocol for emerging IoT network applications. Clust. Comput. 26(1): 85-98 (2023) - [j3]Yann Brice Chebu Mtopi, Alain Bertrand Bomgni, Hafiz Munsub Ali, David R. Gnimpieba Zanfack, Waleed Ejaz, Clémentin Tayou Djamégni, Etienne Zohim Gnimpieba:
MultiHop optimal time complexity clustering for emerging IoT applications. Clust. Comput. 26(2): 993-1009 (2023) - [c24]Alain Bertrand Bomgni, Dialo Abdala, Bichar Dip Shrestha Gurung, Marcellin Julius Antonio Nkenlifack, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba:
Fine-tuning a pre-trained Transformers-based model for gene name entity recognition in biomedical text using a customized dataset: case of Desulfovibrio vulgaris Hildenborough. BIBM 2023: 4473-4479 - [c23]Alain Bertrand Bomgni, Claude Epiphanie Mbotchack Ngale, Shiva Aryal, Marcellin Julius Antonio Nkenlifack, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba:
NLPADADE: Leveraging Natural Language Processing for Automated Detection of Adverse Drug Effects. BIBM 2023: 4480-4487 - [c22]Ramesh Devadig, Bichar Dip Shrestha Gurung, Etienne Z. Gnimpieba, Bharath Jasthi, Venkataramana Gadhamshetty:
Computational methods for biofouling and corrosion-resistant graphene nanocomposites. A transdisciplinary approach. BIBM 2023: 4494-4496 - [c21]Tuyen Do, Bichar Dip Shrestha Gurung, Shiva Aryal, Anup Khanal, Sandeep Chataut, Venkataramana Gadhamshetty, Carol Lushbough, Etienne Z. Gnimpieba:
Utilizing XGBoost for the Prediction of Material Corrosion Rates from Embedded Tabular Data using Large Language Model. BIBM 2023: 4497-4499 - [c20]Bichar Dip Shrestha Gurung, Anup Khanal, Timothy W. Hartman, Tuyen Do, Sandeep Chataut, Carol Lushbough, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba:
Transformer in Microbial Image Analysis: A Comparative Exploration of TransUNet, UNet, and DoubleUNet for SEM Image Segmentation. BIBM 2023: 4500-4502 - [c19]Sam Haas, Bichar Dip Shrestha Gurung, Timothy W. Hartman, Tuyen Do, Etienne Z. Gnimpieba:
SIMPL - An Application for Cell and Microbe Tracking Using Machine Learning. BIBM 2023: 4503-4505 - [c18]Ram Nageena Singh, Etienne Z. Gnimpieba, Rajesh Kumar Sani:
Genome wide computational prediction and analysis of noncoding genome of corrosive biofilm forming Oleidesulfovibrio alaskensis G20. BIBM 2023: 4509-4512 - 2022
- [c17]Alain Bertrand Bomgni, Ernest Basile Fotseu Fotseu, Daril Raoul Kengne Wambo, Rajesh Kumar Sani, Carol Lushbough, Etienne Z. Gnimpieba:
Attention model-based and multi-organism driven gene recognition from text: application to a microbial biofilm organism set. BIBM 2022: 3596-3598 - [c16]Bichar Dip Shrestha Gurung, Ramesh Devadig, Tuyen Do, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba:
U-Net Based Image Segmentation Techniques for Development of Non-Biocidal Fouling-Resistant Ultra-Thin Two-dimensional (2D) Coatings. BIBM 2022: 3602-3604 - [c15]Sam Haas, Timothy W. Hartman, Bichar Dip Shrestha Gurung, Tuyen Do, Rajesh Kumar Sani, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba:
Using BASIN-ML for Machine Learning-Based Statistical Analysis and Reporting for Biofilm Datasets. BIBM 2022: 3605-3607 - [c14]Ram Nageena Singh, Etienne Z. Gnimpieba, Rajesh Kumar Sani:
Title: Challenges in single cells sequencing Microbial community and biofilm: A case of Oleidesulfovibrio alaskensis G20 NGS protocol. BIBM 2022: 3613-3615 - 2021
- [c13]Ernest Basile Fotseu Fotseu, Thierry Kongne Nembot, Rajesh Kumar Sani, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba, Alain Bertrand Bomgni:
GenNER - A highly scalable and optimal NER method for text-based gene and protein recognition. BIBM 2021: 3562-3569 - [c12]William Gasper, Jiahao Ma, Dario Ghersi, Etienne Z. Gnimpieba, Venkataramana Gadhamshetty, Parvathi Chundi:
Automatic Extension of Medical Subject Headings (MeSH) Thesaurus to Emerging Research. BIBM 2021: 3570-3577 - [c11]Thierry Kongne Nembot, Ernest Basile Fotseu Fotseu, Rajesh Kumar Sani, Etienne Z. Gnimpieba, Carol Lushbough, Alain Bertrand Bomgni:
Prediction of essential genes in G20 using machine learning model. BIBM 2021: 3578-3582 - [c10]Priya Saxena, Abhilash Kumar Tripathi, Payal Thakur, Shailabh Rauniyar, Vinoj Gopalakrishnan, Ram Nageena Singh, Mathew A. Olakunle, Etienne Z. Gnimpieba, Rajesh Kumar Sani:
Integration of text mining and biological network analysis to access essential genes in Desulfovibrio alaskensis G20. BIBM 2021: 3583-3585 - [c9]Payal Thakur, Shailabh Rauniyar, Abhilash Kumar Tripathi, Priya Saxena, Vinoj Gopalakrishnan, Ram Nageena Singh, Mathew A. Olakunle, Etienne Z. Gnimpieba, Rajesh Kumar Sani:
Identifying genes involved in biocorrosion from the literature using text-mining. BIBM 2021: 3586-3588 - [c8]Abhilash Kumar Tripathi, Priya Saxena, Payal Thakur, Shailabh Rauniyar, Vinoj Gopalakrishnan, Ram Nageena Singh, Mathew A. Olakunle, Etienne Z. Gnimpieba, Rajesh Kumar Sani:
Discovery of genes associated with sulfate-reducing bacteria biofilm using text mining and biological network analysis. BIBM 2021: 3589-3591
2010 – 2019
- 2017
- [j2]Etienne Z. Gnimpieba, Menno S. VanDiermen, Shayla M. Gustafson, Bill Conn, Carol M. Lushbough:
Bio-TDS: bioscience query tool discovery system. Nucleic Acids Res. 45(Database-Issue): D1117-D1122 (2017) - [c7]Mariah M. Hoffman, Carrie J. Minette, Shanta M. Messerli, Ratan D. Bhardwaj, Etienne Z. Gnimpieba:
NanoStringBioNet: Integrated R framework for bioscience knowledge discovery from NanoString nCounter data. BIBM 2017: 2157-2162 - 2015
- [j1]Carol M. Lushbough, Etienne Z. Gnimpieba, Rion Dooley:
Life science data analysis workflow development using the bioextract server leveraging the iPlant collaborative cyberinfrastructure. Concurr. Comput. Pract. Exp. 27(2): 408-419 (2015) - [c6]Etienne Z. Gnimpieba, Mathialakan Thavappiragasam, Abalo Chango, Bill Conn, Carol M. Lushbough:
SBMLDock: Docker Driven Systems Biology Tool Development and Usage. CMSB 2015: 282-285 - 2014
- [c5]Etienne Z. Gnimpieba, Abalo Chango, Carol M. Lushbough:
RNA-seq gene and transcript expression analysis using the BioExtract server and iPlant collaborative. BCB 2014: 661-669 - [c4]Mathialakan Thavappiragasam, Carol M. Lushbough, Etienne Z. Gnimpieba:
Heuristic parallelizable algorithm for similarity based biosystems comparison. BCB 2014: 782-789 - [c3]Mathialakan Thavappiragasam, Carol M. Lushbough, Etienne Z. Gnimpieba:
Automatic biosystems comparison using semantic and name similarity. BCB 2014: 790-796 - [c2]Nick Weinandt, Laura M. Jackson, Etienne Z. Gnimpieba, Carol Lushbough:
Pheno2GRN: a workflow for phenotype to gene network study and reverse engineering comparison. BCB 2014: 797-804 - 2013
- [c1]Carol Lushbough, Etienne Z. Gnimpieba, Rion Dooley:
BioExtract Server, a Web-based workflow enabling system, leveraging iPlant collaborative resources. CLUSTER 2013: 1-3 - [i1]Etienne Z. Gnimpieba, Douglas M. Jennewein, Luke Fuhrman, Carol Lushbough:
Bioinformatics Knowledge Transmission (training, learning, and teaching): overview and flexible comparison of computer based training approaches. CoRR abs/1310.8383 (2013)
Coauthor Index
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