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Catharina Olsen
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2020 – today
- 2023
- [j10]Mona Nourbakhsh
, Astrid Saksager
, Nikola Tom
, Xi Steven Chen, Antonio Colaprico
, Catharina Olsen
, Matteo Tiberti
, Elena Papaleo
:
A workflow to study mechanistic indicators for driver gene prediction with Moonlight. Briefings Bioinform. 24(5) (2023) - [j9]Laura D. T. Vo Ngoc, Randy Osei, Katrin Dohr, Catharina Olsen, Sara Seneca
, Alexander Gheldof
:
EDIR: exome database of interspersed repeats. Bioinform. 39(1) (2023)
2010 – 2019
- 2019
- [j8]Mohamed Mounir, Marta Lucchetta, Tiago Chedraoui Silva
, Catharina Olsen
, Gianluca Bontempi
, Xi Chen, Houtan Noushmehr, Antonio Colaprico, Elena Papaleo
:
New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx. PLoS Comput. Biol. 15(3) (2019) - 2018
- [i2]Tiago Chedraoui Silva, Antonio Colaprico
, Catharina Olsen
, Tathiane M. Malta, Gianluca Bontempi
, Michele Ceccarelli, Benjamin P. Berman, Houtan Noushmehr
:
TCGAbiolinksGUI: A graphical user interface to analyze cancer molecular and clinical data. F1000Research 7: 439 (2018) - 2016
- [j7]Petr Smirnov
, Zhaleh Safikhani, Nehme Hachem
, Dong Wang, Adrian She, Catharina Olsen
, Mark Freeman, Heather Marie Selby, Deena M. A. Gendoo
, Patrick Grossmann, Andrew H. Beck, Hugo J. W. L. Aerts, Mathieu Lupien
, Anna Goldenberg, Benjamin Haibe-Kains
:
PharmacoGx: an R package for analysis of large pharmacogenomic datasets. Bioinform. 32(8): 1244-1246 (2016) - [i1]Tiago Chedraoui Silva
, Antonio Colaprico
, Catharina Olsen
, Fulvio D'Angelo
, Gianluca Bontempi
, Michele Ceccarelli
, Houtan Noushmehr
:
TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages. F1000Research 5: 1542 (2016) - 2015
- [j6]Pau Bellot, Catharina Olsen
, Philippe Salembier, Albert Oliveras-Vergés
, Patrick E. Meyer:
NetBenchmark: a bioconductor package for reproducible benchmarks of gene regulatory network inference. BMC Bioinform. 16: 312:1-312:15 (2015) - 2013
- [j5]Nicolas De Jay, Simon Papillon-Cavanagh
, Catharina Olsen
, Nehme Hachem
, Gianluca Bontempi
, Benjamin Haibe-Kains
:
mRMRe: an R package for parallelized mRMR ensemble feature selection. Bioinform. 29(18): 2365-2368 (2013) - [j4]Simon Papillon-Cavanagh
, Nicolas De Jay, Nehme Hachem
, Catharina Olsen
, Gianluca Bontempi
, Hugo J. W. L. Aerts, John Quackenbush
, Benjamin Haibe-Kains
:
Research and applications: Comparison and validation of genomic predictors for anticancer drug sensitivity. J. Am. Medical Informatics Assoc. 20(4): 597-602 (2013) - 2012
- [j3]Benjamin Haibe-Kains
, Catharina Olsen
, Amira Djebbari, Gianluca Bontempi
, Mick Correll, Christopher Bouton, John Quackenbush
:
Predictive networks: a flexible, open source, web application for integration and analysis of human gene networks. Nucleic Acids Res. 40(Database-Issue): 866-875 (2012) - 2011
- [j2]Abhilash Alexander Miranda, Catharina Olsen
, Gianluca Bontempi
:
Fourier spectral factor model for prediction of multidimensional signals. Signal Process. 91(9): 2172-2177 (2011)
2000 – 2009
- 2009
- [j1]Catharina Olsen
, Patrick E. Meyer, Gianluca Bontempi
:
On the Impact of Entropy Estimation on Transcriptional Regulatory Network Inference Based on Mutual Information. EURASIP J. Bioinform. Syst. Biol. 2009 (2009)
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