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ORCIDMona Singh 0001
Person information
- affiliation: Princeton University, Lewis-Sigler Institute for Integrative Genomics, Princeton, NJ, USA
- award (2001): Presidential Early Career Award for Scientists and Engineers
Other persons with the same name
- Mona Singh 0002 — University of Texas at Austin, TX, USA
- Mona Singh 0003 — Channel Advisor Corporation, Morrisville, NC, USA
- Mona Singh 0004 — Banaras Hindu University, Varanasi, India
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Books and Theses
- 1995
[b1]Mona Singh:
Learning algorithms with applications to robot navigation and protein folding. Massachusetts Institute of Technology, Cambridge, MA, USA, 1995
Journal Articles
- 2023
- [j37]Sean B. King
, Mona Singh:
Primate protein-ligand interfaces exhibit significant conservation and unveil human-specific evolutionary drivers. PLoS Comput. Biol. 19(3) (2023) - 2021
- [j36]Daniel Munro, Mona Singh:
DeMaSk: a deep mutational scanning substitution matrix and its use for variant impact prediction. Bioinform. 36(22-23): 5322-5329 (2021) - [j35]Chaitanya Aluru, Mona Singh:
Improved inference of tandem domain duplications. Bioinform. 37(Supplement): 133-141 (2021) - [j34]Sean B. King, Mona Singh:
Comparative genomic analysis reveals varying levels of mammalian adaptation to coronavirus infections. PLoS Comput. Biol. 17(11) (2021) - 2018
- [j33]Daniel Munro, Dario Ghersi, Mona Singh:
Two critical positions in zinc finger domains are heavily mutated in three human cancer types. PLoS Comput. Biol. 14(6) (2018) - 2017
- [j32]Alejandro Ochoa, Mona Singh:
Domain prediction with probabilistic directional context. Bioinform. 33(16): 2471-2478 (2017) - 2015
- [j31]Yuri Pritykin, Dario Ghersi, Mona Singh:
Genome-Wide Detection and Analysis of Multifunctional Genes. PLoS Comput. Biol. 11(10) (2015) - [j30]Alejandro Ochoa, John D. Storey, Manuel Llinás, Mona Singh:
Beyond the E-Value: Stratified Statistics for Protein Domain Prediction. PLoS Comput. Biol. 11(11) (2015) - 2014
- [j29]Dario Ghersi, Mona Singh:
molBLOCKS: decomposing small molecule sets and uncovering enriched fragments. Bioinform. 30(14): 2081-2083 (2014) - 2013
- [j28]Dario Ghersi, Mona Singh:
Disentangling function from topology to infer the network properties of disease genes. BMC Syst. Biol. 7: 5 (2013) - [j27]Jimin Song, Mona Singh:
From Hub Proteins to Hub Modules: The Relationship Between Essentiality and Centrality in the Yeast Interactome at Different Scales of Organization. PLoS Comput. Biol. 9(2) (2013) - [j26]Peng Jiang, Mona Singh, Hilary A. Coller:
Computational Assessment of the Cooperativity between RNA Binding Proteins and MicroRNAs in Transcript Decay. PLoS Comput. Biol. 9(5) (2013) - [j25]Yuri Pritykin, Mona Singh:
Simple Topological Features Reflect Dynamics and Modularity in Protein Interaction Networks. PLoS Comput. Biol. 9(10) (2013) - [j24]Tamer Kahveci, Mona Singh:
Guest Editorial for ACM BCB. IEEE ACM Trans. Comput. Biol. Bioinform. 10(5): 1089-1090 (2013) - 2011
- [j23]Alejandro Ochoa, Manuel Llinás, Mona Singh:
Using context to improve protein domain identification. BMC Bioinform. 12: 90 (2011) - [j22]Carl Kingsford, Elena Zaslavsky, Mona Singh:
A cost-aggregating integer linear program for motif finding. J. Discrete Algorithms 9(4): 326-334 (2011) - 2010
- [j21]Teresa M. Przytycka, Mona Singh, Donna K. Slonim:
Toward the dynamic interactome: it's about time. Briefings Bioinform. 11(1): 15-29 (2010) - [j20]Peng Jiang, Mona Singh:
SPICi: a fast clustering algorithm for large biological networks. Bioinform. 26(8): 1105-1111 (2010) - [j19]John A. Capra, Katrin Paeschke, Mona Singh, Virginia A. Zakian:
G-Quadruplex DNA Sequences Are Evolutionarily Conserved and Associated with Distinct Genomic Features in Saccharomyces cerevisiae. PLoS Comput. Biol. 6(7) (2010) - 2009
- [j18]Anton V. Persikov, Robert Osada, Mona Singh:
Predicting DNA recognition by Cys2His2 zinc finger proteins. Bioinform. 25(1): 22-29 (2009) - [j17]Chen Yanover, Mona Singh, Elena Zaslavsky:
M are better than one: an ensemble-based motif finder and its application to regulatory element prediction. Bioinform. 25(7): 868-874 (2009) - [j16]Zia Khan, Joshua S. Bloom, Leonid Kruglyak, Mona Singh:
A practical algorithm for finding maximal exact matches in large sequence datasets using sparse suffix arrays. Bioinform. 25(13): 1609-1616 (2009) - [j15]Jimin Song, Mona Singh:
How and when should interactome-derived clusters be used to predict functional modules and protein function? Bioinform. 25(23): 3143-3150 (2009) - [j14]John A. Capra, Roman A. Laskowski, Janet M. Thornton, Mona Singh, Thomas A. Funkhouser:
Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence Conservation and 3D Structure. PLoS Comput. Biol. 5(12) (2009) - [j13]Zia Khan, Joshua S. Bloom, Benjamin A. Garcia, Mona Singh, Leonid Kruglyak:
Protein quantification across hundreds of experimental conditions. Proc. Natl. Acad. Sci. USA 106(37): 15544-15548 (2009) - 2008
- [j12]John A. Capra, Mona Singh:
Characterization and prediction of residues determining protein functional specificity. Bioinform. 24(13): 1473-1480 (2008) - [j11]Eric Banks, Elena Nabieva, Bernard Chazelle, Mona Singh:
Organization of Physical Interactomes as Uncovered by Network Schemas. PLoS Comput. Biol. 4(10) (2008) - 2007
- [j10]John A. Capra, Mona Singh:
Predicting functionally important residues from sequence conservation. Bioinform. 23(15): 1875-1882 (2007) - 2006
- [j9]Elena Zaslavsky, Mona Singh:
A combinatorial optimization approach for diverse motif finding applications. Algorithms Mol. Biol. 1 (2006) - 2005
- [j8]Carleton Kingsford, Bernard Chazelle, Mona Singh:
Solving and analyzing side-chain positioning problems using linear and integer programming. Bioinform. 21(7): 1028-1039 (2005) - 2004
- [j7]Dawn J. Brooks, Jacques R. Fresco, Mona Singh:
A novel method for estimating ancestral amino acid composition and its application to proteins of the Last Universal Ancestor. Bioinform. 20(14): 2251-2257 (2004) - [j6]Robert Osada, Elena Zaslavsky, Mona Singh:
Comparative analysis of methods for representing and searching for transcription factor binding sites. Bioinform. 20(18): 3516-3525 (2004) - [j5]Bernard Chazelle, Carl Kingsford, Mona Singh:
A Semidefinite Programming Approach to Side Chain Positioning with New Rounding Strategies. INFORMS J. Comput. 16(4): 380-392 (2004) - 1999
- [j4]Baruch Awerbuch, Margrit Betke, Ronald L. Rivest, Mona Singh:
Piecemeal Graph Exploration by a Mobile Robot. Inf. Comput. 152(2): 155-172 (1999) - 1998
- [j3]Mona Singh, Bonnie Berger, Peter S. Kim, James M. Berger, Andrea G. Cochran:
Computational learning reveals coiled coil-like motifs in histidine kinase linker domains. Proc. Natl. Acad. Sci. USA 95(6): 2738-2743 (1998) - 1997
- [j2]Bonnie Berger, Mona Singh:
An Iterative Method for Improved Protein Structural Motif Recognition. J. Comput. Biol. 4(3): 261-273 (1997) - 1995
- [j1]Margrit Betke, Ronald L. Rivest, Mona Singh:
Piecemeal Learning of an Unknown Environment. Mach. Learn. 18(2-3): 231-254 (1995)
Conference and Workshop Papers
- 2022
- [c17]Joshua L. Wetzel, Kaiqian Zhang, Mona Singh:
Learning Probabilistic Protein-DNA Recognition Codes from DNA-Binding Specificities Using Structural Mappings. RECOMB 2022: 363-365 - 2020
- [c16]Chaitanya Aluru, Mona Singh:
Identifying Evolutionary Origins of Repeat Domains in Protein Families. BCB 2020: 2:1-2:11 - [c15]Borislav H. Hristov, Bernard Chazelle, Mona Singh:
A Guided Network Propagation Approach to Identify Disease Genes that Combines Prior and New Information. RECOMB 2020: 251-252 - 2018
- [c14]Mona Singh:
Sequence, Structure and Network Methods to Uncover Cancer Genes. BCB 2018: 561 - 2017
- [c13]Borislav H. Hristov, Mona Singh:
Network-Based Coverage of Mutational Profiles Reveals Cancer Genes. RECOMB 2017: 375-376 - 2010
- [c12]Mona Singh:
Predicting and Analyzing Cellular Networks. ISBRA 2010: 166 - [c11]Tanya Y. Berger-Wolf, Teresa M. Przytycka, Mona Singh, Donna K. Slonim:
Session Introduction. Pacific Symposium on Biocomputing 2010: 120-122 - 2009
- [c10]Eric Banks, Elena Nabieva, Bernard Chazelle, Ryan Peterson, Mona Singh:
Analyzing and Interrogating Biological Networks (Abstract). BICoB 2009: 14-15 - [c9]Tanya Y. Berger-Wolf, Teresa M. Przytycka, Mona Singh:
Session Introduction. Pacific Symposium on Biocomputing 2009: 174-177 - 2006
- [c8]Carl Kingsford, Elena Zaslavsky, Mona Singh:
A Compact Mathematical Programming Formulation for DNA Motif Finding. CPM 2006: 233-245 - 2005
- [c7]Elena Nabieva, Kam Jim, Amit Agarwal, Bernard Chazelle, Mona Singh:
Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps. ISMB (Supplement of Bioinformatics) 2005: 302-310 - 2003
- [c6]Bernard Chazelle, Carl Kingsford, Mona Singh:
The Side-Chain Positioning Problem: A Semidefinite Programming Formulation With New Rounding Schemes. PCK50 2003: 86-94 - 2001
- [c5]Mona Singh, Peter S. Kim:
Towards predicting coiled-coil protein interactions. RECOMB 2001: 279-286 - 1997
- [c4]Bonnie Berger, Mona Singh:
An iterative method for improved protein structural motif recognition. RECOMB 1997: 37-46 - 1995
- [c3]Baruch Awerbuch, Margrit Betke, Ronald L. Rivest, Mona Singh:
Piecemeal Graph Exploration by a Mobile Robot (Extended Abstract). COLT 1995: 321-328 - 1993
- [c2]Margrit Betke, Ronald L. Rivest, Mona Singh:
Piecemeal Learning of an Unknown Environment. COLT 1993: 277-286 - 1990
- [c1]Avrim Blum, Mona Singh:
Learning Functions of k Terms. COLT 1990: 144-153
Parts in Books or Collections
- 2008
- [p1]Mona Singh:
From Protein Interaction Networks to Protein Function. Protein-protein Interactions and Networks 2008: 139-162
Editorship
- 2016
- [e3]Mona Singh:
Research in Computational Molecular Biology - 20th Annual Conference, RECOMB 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings. Lecture Notes in Computer Science 9649, Springer 2016, ISBN 978-3-319-31956-8 [contents] - 2012
- [e2]Sanjay Ranka, Tamer Kahveci, Mona Singh:
ACM International Conference on Bioinformatics, Computational Biology and Biomedicine, BCB' 12, Orlando, FL, USA - October 08 - 10, 2012. ACM 2012, ISBN 978-1-4503-1670-5 [contents] - 2010
- [e1]Vincent Moulton, Mona Singh:
Algorithms in Bioinformatics, 10th International Workshop, WABI 2010, Liverpool, UK, September 6-8, 2010. Proceedings. Lecture Notes in Computer Science 6293, Springer 2010, ISBN 978-3-642-15293-1 [contents]
Informal and Other Publications
- 2024
- [i2]David Danks, Rada Mihalcea, Katie Siek, Mona Singh, Brian Dixon, Haley Griffin:
Future of Pandemic Prevention and Response CCC Workshop Report. CoRR abs/2403.00096 (2024) - 2017
- [i1]Borislav H. Hristov, Mona Singh:
Network-based coverage of mutational profiles reveals cancer genes. CoRR abs/1704.08544 (2017)
Coauthor Index
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