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ORCIDHideo Matsuda
- > Home > Persons > Hideo Matsuda
Publications
- 2024
[j22]Kazufumi Hosoda
, Shigeto Seno, Naomi Murakami, Hideo Matsuda, Yutaka Osada, Rikuto Kamiura, Michio Kondoh:
Synthetic model ecosystem of 12 cryopreservable microbial species allowing for a noninvasive approach. Biosyst. 235: 105087 (2024)- 2023
- [c32]Toru Nagamura, Shigeto Seno, Hironori Shigeta, Tomohiro Mashita, Hideo Matsuda:
Cell Tracking via Reinforcement Learning with Microscopic Image Simulator. ICBET 2023: 16-22 - [c31]Koki Nishi, Junko Yoshida, Shigeto Seno, Kyoji Horie, Hideo Matsuda:
Pseudotime-based Deep Learning of Gene Regulatory Relationships from Single-Cell Expression Data. ICBET 2023: 56-62 - 2021
- [c27]Kenji Fujimoto, Tsubasa Mizugaki, Utkrisht Rajkumar, Hironori Shigeta, Shigeto Seno, Yutaka Uchida, Masaru Ishii, Vineet Bafna, Hideo Matsuda:
A CNN-based cell tracking method for multi-slice intravital imaging data. BCB 2021: 35:1-35:7 - 2019
- [j21]Yoshiaki Sota, Shigeto Seno, Hironori Shigeta, Naoki Osato, Masafumi Shimoda, Shinzaburo Noguchi, Hideo Matsuda:
Improvement of detection performance of fusion genes from RNA-seq data by clustering short reads. J. Bioinform. Comput. Biol. 17(3): 1940008:1-1940008:12 (2019) - [j20]Viacheslav Kapilevich, Shigeto Seno, Hideo Matsuda, Yoichi Takenaka:
Chromatin 3D Reconstruction from Chromosomal Contacts Using a Genetic Algorithm. IEEE ACM Trans. Comput. Biol. Bioinform. 16(5): 1620-1626 (2019) - [c26]Hironori Shigeta, Shigeto Seno, Shino Nishizawa, Yutaka Uchida, Junichi Kikuta, Masaru Ishii, Hideo Matsuda:
Analyzing Leukocyte Migration Trajectories by Deformable Image Matching. BIBE 2019: 94-98 - [c25]Naoki Osato, Hironori Shigeta, Shigeto Seno, Yutaka Uchida, Junichi Kikuta, Masaru Ishii, Hideo Matsuda:
Single-cell Transcriptome Analysis of Mouse Leukocytes in Inflammatory Stimulation. BIBM 2019: 1229-1231 - 2018
- [j19]Yoichi Takenaka, Kazuma Mikami, Shigeto Seno, Hideo Matsuda:
Automated transition analysis of activated gene regulation during diauxic nutrient shift in Escherichia coli and adipocyte differentiation in mouse cells. BMC Bioinform. 19-S(4): 49-59 (2018) - [c24]Yoshiaki Sota, Shigeto Seno, Hironori Shigeta, Naoki Osato, Masafumi Shimoda, Shinzaburo Noguchi, Hideo Matsuda:
Detection of Fusion Genes from Human Breast Cancer Cell-Line RNA-Seq Data Using Shifted Short Read Clustering. BIBE 2018: 159-162 - [c23]Mitsuhiro Eto, Wataru Hirota, Shigeto Seno, Hideo Matsuda:
Asymmetric Integration of Single-Cell Transcriptomic Data using Latent Dirichlet Allocation and Procrustes Analysis. BIBM 2018: 2129-2135 - 2017
- [j18]Hironori Shigeta, Tomohiro Mashita, Junichi Kikuta, Shigeto Seno, Haruo Takemura, Masaru Ishii, Hideo Matsuda:
Bone marrow cavity segmentation using graph-cuts with wavelet-based texture feature. J. Bioinform. Comput. Biol. 15(5): 1740004:1-1740004:16 (2017) - 2016
- [c22]Yoshiaki Sota, Shigeto Seno, Yoichi Takenaka, Shinzaburo Noguchi, Hideo Matsuda:
Comparative Analysis of Transformation Methods for Gene Expression Profiles in Breast Cancer Datasets. BIBE 2016: 328-333 - [c21]Hironori Shigeta, Tomohiro Mashita, Junichi Kikuta, Shigeto Seno, Haruo Takemura, Hideo Matsuda, Masaru Ishii:
A bone marrow cavity segmentation method using wavelet-based texture feature. ICPR 2016: 2133-2138 - 2015
- [j17]Yoichi Takenaka, Shigeto Seno, Hideo Matsuda:
Detecting shifts in gene regulatory networks during time-course experiments at single-time-point temporal resolution. J. Bioinform. Comput. Biol. 13(5): 1543002:1-1543002:18 (2015) - 2014
- [c20]Hironori Shigeta, Tomohiro Mashita, Takeshi Kaneko, Junichi Kikuta, Shigeto Seno, Haruo Takemura, Hideo Matsuda, Masaru Ishii:
A Graph Cuts Image Segmentation Method for Quantifying Barrier Permeation in Bone Tissue. I3A@ICPR 2014: 16-19 - [c19]Tomohiro Mashita, Jun Usam, Hironori Shigeta, Yoshihiro Kuroda, Junichi Kikuta, Shigeto Seno, Masaru Ishii, Hideo Matsuda, Haruo Takemura:
A Segmentation Method for Bone Marrow Cavity Imaging Using Graph Cuts. I3A@ICPR 2014: 20-23 - 2012
- [j16]Yukito Watanabe, Shigeto Seno, Yoichi Takenaka, Hideo Matsuda:
An estimation method for inference of gene regulatory net-work using Bayesian network with uniting of partial problems. BMC Genom. 13(S-1): S12 (2012) - 2002
- [c10]Shigeto Seno, Reiji Teramoto, Hideo Matsuda:
P-quasi Complete Linkage Analysis for Gene-Expression Data. CSB 2002: 342
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