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Publications
- 2017
[j84]Ru-Dong Li, Guohui Ding, Yixue Li:
Virtualisation of gene knockout experiments based on kinetic modelling: Escherichia coli as an algorithmic case. Int. J. Comput. Biol. Drug Des. 10(2): 157-188 (2017)- 2014
- [j71]Chao Li, Xiao Dong, Haiwei Fan, Chuan Wang, Guohui Ding, Yixue Li:
The 3DGD: a database of genome 3D structure. Bioinform. 30(11): 1640-1642 (2014) - 2011
- [j55]Yan Ji, Yixiang Shi, Guohui Ding, Yixue Li:
A new strategy for better genome assembly from very short reads. BMC Bioinform. 12: 493 (2011) - [j52]Tao Huang, Lei Liu, Qi Liu, Guohui Ding, Yejun Tan, Zhidong Tu, Yixue Li, Hongyue Dai, Lu Xie
:
The role of Hepatitis C Virus in the dynamic protein interaction networks of hepatocellular cirrhosis and carcinoma. Int. J. Comput. Biol. Drug Des. 4(1): 5-18 (2011) - 2010
- [j45]Qi Liu, Yejun Tan, Tao Huang, Guohui Ding, Zhidong Tu, Lei Liu, Yixue Li, Hongyue Dai, Lu Xie:
TF-centered downstream gene set enrichment analysis: Inference of causal regulators by integrating TF-DNA interactions and protein post-translational modifications information. BMC Bioinform. 11(S-11): S5 (2010) - [j43]Hong Li, Ying He, Guohui Ding, Chuan Wang, Lu Xie, Yixue Li:
dbDEPC: a database of Differentially Expressed Proteins in human Cancers. Nucleic Acids Res. 38(Database-Issue): 658-664 (2010) - [c6]Tao Huang, Guohui Ding, Yixue Li, Lei Liu, Eugene Tan, Hongyue Dai, Qi Liu, Zhidong Tu, Lu Xie:
Dysfunctional gene/protein networks in hepatitis C virus-induced hepatocellular cirrhosis and carcinoma. BCB 2010: 502-507 - 2009
- [j42]Zhen Wang, Guohui Ding, Zhong-Hao Yu, Lei Liu, Yixue Li:
CHSMiner: a GUI tool to identify chromosomal homologous segments. Algorithms Mol. Biol. 4 (2009) - [j40]Hong Li, Guohui Ding, Lu Xie, Yixue Li:
PAnnBuilder: an R package for assembling proteomic annotation data. Bioinform. 25(8): 1094-1095 (2009) - [j38]Yao Yu, Kang Tu, Siyuan Zheng, Yun Li, Guohui Ding, Jie Ping, Pei Hao, Yixue Li:
GEOGLE: context mining tool for the correlation between gene expression and the phenotypic distinction. BMC Bioinform. 10: 264 (2009) - [j36]Guohui Ding, Peter Lorenz, Michael Kreutzer, Yixue Li, Hans-Jürgen Thiesen:
SysZNF: the C2H2 zinc finger gene database. Nucleic Acids Res. 37(Database-Issue): 267-273 (2009) - [j34]Hong Xi, Jongsun Park, Guohui Ding, Yong-Hwan Lee, Yixue Li:
SysPIMP: the web-based systematical platform for identifying human disease-related mutated sequences from mass spectrometry. Nucleic Acids Res. 37(Database-Issue): 913-920 (2009) - 2008
- [j27]Guohui Ding, Yan Sun, Hong Li, Zhen Wang, Haiwei Fan, Chuan Wang, Dan Yang, Yixue Li:
EPGD: a comprehensive web resource for integrating and displaying eukaryotic paralog/paralogon information. Nucleic Acids Res. 36(Database-Issue): 255-262 (2008) - 2007
- [j23]Jingchun Sun, Yan Sun, Guohui Ding, Qi Liu, Chuan Wang, Youyu He, Tieliu Shi, Yixue Li, Zhongming Zhao:
InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes. BMC Bioinform. 8 (2007) - [j21]Jing Zhao, Guo-Hui Ding, Lin Tao, Hong Yu, Zhong-Hao Yu, Jianhua Luo, Zhi-Wei Cao, Yi-Xue Li:
Modular co-evolution of metabolic networks. BMC Bioinform. 8 (2007) - 2006
- [j8]Guohui Ding, Jiuhong Kang, Qi Liu, Tieliu Shi, Gang Pei, Yixue Li:
Insights into the Coupling of Duplication Events and Macroevolution from an Age Profile of Animal Transmembrane Gene Families. PLoS Comput. Biol. 2(8) (2006)
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