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ORCIDFabio Rinaldi 0001
- > Home > Persons > Fabio Rinaldi 0001
Publications
- 2016
[j26]Fabio Rinaldi
, Tilia Renate Ellendorff, Sumit Madan, Simon Clematide, Adrian Van der Lek, Heinz-Theodor Mevissen, Juliane Fluck:
BioCreative V track 4: a shared task for the extraction of causal network information using the Biological Expression Language. Database J. Biol. Databases Curation 2016 (2016)- 2015
- [c50]Fabio Rinaldi, Lenz Furrer, Simon Clematide:
Large-scale Information Extraction for Assisted Curation of the Biomedical Literature. IT@LIA@AI*IA 2015 - 2014
- [j21]Socorro Gama-Castro, Fabio Rinaldi, Alejandra López-Fuentes, Yalbi Itzel Balderas-Martínez, Simon Clematide, Tilia Renate Ellendorff, Alberto Santos-Zavaleta, Hernani Marques-Madeira, Julio Collado-Vides:
Assisted curation of regulatory interactions and growth conditions of OxyR in E. coli K-12. Database J. Biol. Databases Curation 2014 (2014) - [j19]Fabio Rinaldi, Simon Clematide, Hernani Marques, Tilia Ellendorff, Martin Romacker, Raul Rodriguez-Esteban:
OntoGene web services for biomedical text mining. BMC Bioinform. 15(S-14): S6 (2014) - [c46]Tilia Ellendorff, Fabio Rinaldi, Simon Clematide:
Using Large Biomedical Databases as Gold Annotations for Automatic Relation Extraction. LREC 2014: 3736-3741 - 2013
- [j17]Fabio Rinaldi, Simon Clematide, Simon Hafner, Gerold Schneider, Gintare Grigonyte, Martin Romacker, Thérèse Vachon:
Using the OntoGene pipeline for the triage task of BioCreative 2012. Database J. Biol. Databases Curation 2013 (2013) - [c44]Gerold Schneider, Simon Clematide, Tilia Ellendorff, Don Tuggener, Fabio Rinaldi, Gintare Grigonyte:
UZH in BioNLP 2013. BioNLP@ACL (Shared Task) 2013: 116-120 - [c43]Simon Clematide, Martin Davtyan, Fabio Rinaldi, Dietrich Rebholz-Schuhmann:
Exploiting BabelNet for Multilingual Biomedical Synonym Expansion. CLEF (Working Notes) 2013 - [c42]Dietrich Rebholz-Schuhmann, Simon Clematide, Fabio Rinaldi, Senay Kafkas, Erik M. van Mulligen, Quoc-Chinh Bui, Johannes Hellrich, Ian Lewin, David Milward, Michael Poprat, Antonio Jimeno-Yepes, Udo Hahn, Jan A. Kors:
Entity Recognition in Parallel Multi-lingual Biomedical Corpora: The CLEF-ER Laboratory Overview. CLEF 2013: 353-367 - [c41]Dietrich Rebholz-Schuhmann, Simon Clematide, Fabio Rinaldi, Senay Kafkas, Erik M. van Mulligen, Quoc-Chinh Bui, Johannes Hellrich, Ian Lewin, David Milward, Michael Poprat, Antonio Jimeno-Yepes, Udo Hahn, Jan A. Kors:
Multilingual Semantic Resources and Parallel Corpora in the Biomedical Domain: the CLEF-ER Challenge. CLEF (Working Notes) 2013 - 2012
- [j16]Fabio Rinaldi, Simon Clematide, Yael Garten, Michelle Whirl Carrillo, Li Gong, Joan M. Hebert, Katrin Sangkuhl, Caroline F. Thorn, Teri E. Klein, Russ B. Altman:
Using ODIN for a PharmGKB revalidation experiment. Database J. Biol. Databases Curation 2012 (2012) - [j15]Simon Clematide, Fabio Rinaldi:
Ranking relations between diseases, drugs and genes for a curation task. J. Biomed. Semant. 3(S-3): S5 (2012) - [j14]Fabio Rinaldi, Gerold Schneider, Simon Clematide:
Relation mining experiments in the pharmacogenomics domain. J. Biomed. Informatics 45(5): 851-861 (2012) - [c38]Fabio Rinaldi, Simon Clematide, Gerold Schneider, Gintare Grigonyte:
Notes about the OntoGene Pipeline. AAAI Fall Symposium: Information Retrieval and Knowledge Discovery in Biomedical Text 2012 - [c36]Gerold Schneider, Fabio Rinaldi, Simon Clematide:
Dependency parsing for interaction detection in pharmacogenomics. LREC 2012: 2075-2082 - 2011
- [j11]Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn:
Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. J. Biomed. Semant. 2(S-5): S11 (2011) - [j10]Gerold Schneider, Simon Clematide, Fabio Rinaldi:
Detection of interaction articles and experimental methods in biomedical literature. BMC Bioinform. 12(S-8): S13 (2011) - [j7]Cecilia N. Arighi, Phoebe M. Roberts, Shashank Agarwal, Sanmitra Bhattacharya, Gianni Cesareni, Andrew Chatr-aryamontri, Simon Clematide, Pascale Gaudet, Michelle G. Giglio, Ian Harrow, Eva Huala, Martin Krallinger, Ulf Leser, Donghui Li, Feifan Liu, Zhiyong Lu, Lois J. Maltais, Naoaki Okazaki, Livia Perfetto, Fabio Rinaldi, Rune Sætre, David Salgado, Padmini Srinivasan, Philippe E. Thomas, Luca Toldo, Lynette Hirschman, Cathy H. Wu:
BioCreative III interactive task: an overview. BMC Bioinform. 12(S-8): S4 (2011) - [c34]Don Tuggener, Manfred Klenner, Gerold Schneider, Simon Clematide, Fabio Rinaldi:
An Incremental Model for the Coreference Resolution Task of BioNLP 2011. BioNLP@ACL (Shared Task) 2011: 151-152 - [c33]Simon Clematide, Fabio Rinaldi:
Ranking Interactions for a Curation Task. ICMLA (2) 2011: 100-105 - 2010
- [j6]Fabio Rinaldi, Gerold Schneider, Kaarel Kaljurand, Simon Clematide, Thérèse Vachon, Martin Romacker:
OntoGene in BioCreative II.5. IEEE ACM Trans. Comput. Biol. Bioinform. 7(3): 472-480 (2010) - [c32]Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn:
Assessment of NER solutions against the first and second CALBC silver standard corpus. Semantic Mining in Biomedicine 2010
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