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Roberto Barbuti
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Publications
- 2021
- [j58]Roberto Barbuti, Pasquale Bove, Roberta Gori, Damas P. Gruska, Francesca Levi, Paolo Milazzo:
Encoding Threshold Boolean Networks into Reaction Systems for the Analysis of Gene Regulatory Networks. Fundam. Informaticae 179(2): 205-225 (2021) - [j57]Roberto Barbuti, Anna Bernasconi, Roberta Gori, Paolo Milazzo:
Characterization and computation of ancestors in reaction systems. Soft Comput. 25(3): 1683-1698 (2021) - [j56]Roberto Barbuti, Roberta Gori, Paolo Milazzo:
Encoding Boolean networks into reaction systems for investigating causal dependencies in gene regulation. Theor. Comput. Sci. 881: 3-24 (2021) - 2020
- [j55]Roberto Barbuti, Roberta Gori, Paolo Milazzo, Lucia Nasti:
A survey of gene regulatory networks modelling methods: from differential equations, to Boolean and qualitative bioinspired models. J. Membr. Comput. 2(3): 207-226 (2020) - 2018
- [j54]Roberto Barbuti, Roberta Gori, Francesca Levi, Paolo Milazzo:
Generalized contexts for reaction systems: definition and study of dynamic causalities. Acta Informatica 55(3): 227-267 (2018) - [j53]Roberto Barbuti, Roberta Gori, Paolo Milazzo:
Predictors for flat membrane systems. Theor. Comput. Sci. 736: 79-102 (2018) - [c44]Roberto Barbuti, Pasquale Bove, Roberta Gori, Francesca Levi, Paolo Milazzo:
Simulating Gene Regulatory Networks using Reaction Systems. CS&P 2018 - [c43]Roberto Barbuti, Anna Bernasconi, Roberta Gori, Paolo Milazzo:
Computing Preimages and Ancestors in Reaction Systems. TPNC 2018: 23-35 - 2017
- [c42]Roberto Barbuti, Roberta Gori, Paolo Milazzo:
Multiset Patterns and Their Application to Dynamic Causalities in Membrane Systems. Int. Conf. on Membrane Computing 2017: 54-73 - 2016
- [j52]Roberto Barbuti, Roberta Gori, Francesca Levi, Paolo Milazzo:
Specialized Predictor for Reaction Systems with Context Properties. Fundam. Informaticae 147(2-3): 173-191 (2016) - [j51]Roberto Barbuti, Roberta Gori, Francesca Levi, Paolo Milazzo:
Investigating dynamic causalities in reaction systems. Theor. Comput. Sci. 623: 114-145 (2016) - [c41]Roberto Barbuti, Pasquale Bove, Paolo Milazzo, Giovanni Pardini:
Applications of P Systems in Population Biology and Ecology: The Cases of MPP and APP Systems. Int. Conf. on Membrane Computing 2016: 28-48 - 2015
- [j50]Roberto Barbuti, Pasquale Bove, Paolo Milazzo, Giovanni Pardini:
Minimal probabilistic P systems for modelling ecological systems. Theor. Comput. Sci. 608: 36-56 (2015) - [c40]Roberto Barbuti, Roberta Gori, Francesca Levi, Paolo Milazzo:
Specialized Predictor for Reaction Systems with Context Properties. CS&P 2015: 31-43 - [c39]Roberto Barbuti, Alessandro Bompadre, Pasquale Bove, Paolo Milazzo, Giovanni Pardini:
Attributed Probabilistic P Systems and Their Application to the Modelling of Social Interactions in Primates. SEFM Workshops 2015: 176-191 - 2014
- [j49]Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo, Giovanni Pardini:
Simulation of Spatial P system models. Theor. Comput. Sci. 529: 11-45 (2014) - [j48]Giovanni Pardini, Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo, Simone Tini:
Compositional semantics and behavioural equivalences for reaction systems with restriction. Theor. Comput. Sci. 551: 1-21 (2014) - [c38]Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo, Giovanni Pardini, Simone Tini:
Systolic Automata and P Systems. Computing with New Resources 2014: 17-31 - [c37]Sheema Sameen, Roberto Barbuti, Paolo Milazzo, Antonio Cerone:
A Mathematical Model for Assessing KRAS Mutation Effect on Monoclonal Antibody Treatment of Colorectal Cancer. SEFM Workshops 2014: 243-258 - 2013
- [c36]Giovanni Pardini, Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo, Simone Tini:
A Compositional Semantics of Reaction Systems with Restriction. CiE 2013: 330-339 - [c35]Roberto Barbuti, Pasquale Bove, Andrea Maggiolo-Schettini, Paolo Milazzo, Giovanni Pardini:
A Computational Formal Model of the Invasiveness of Eastern Species in European Water Frog Populations. SEFM Workshops 2013: 329-344 - 2012
- [j46]Roberto Barbuti, Francesca Levi, Paolo Milazzo, Guido Scatena:
Probabilistic model checking of biological systems with uncertain kinetic rates. Theor. Comput. Sci. 419: 2-16 (2012) - [j45]Roberto Barbuti, Giulio Caravagna, Andrea Maggiolo-Schettini, Paolo Milazzo, Simone Tini:
Foundational aspects of multiscale modeling of biological systems with process algebras. Theor. Comput. Sci. 431: 96-116 (2012) - [c34]Roberto Barbuti, Antonio Cerone, Andrea Maggiolo-Schettini, Paolo Milazzo, Suryana Setiawan:
Modelling Population Dynamics Using Grid Systems. SEFM Satellite Events 2012: 172-189 - 2011
- [j44]Roberto Barbuti, Francesca Levi, Paolo Milazzo, Guido Scatena:
Maximally Parallel Probabilistic Semantics for Multiset Rewriting. Fundam. Informaticae 112(1): 1-17 (2011) - [j43]Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo, Simone Tini:
An Overview on Operational Semantics in Membrane Computing. Int. J. Found. Comput. Sci. 22(1): 119-131 (2011) - [j41]Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo, Giovanni Pardini, Luca Tesei:
Spatial P systems. Nat. Comput. 10(1): 3-16 (2011) - [j40]Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo, Giovanni Pardini:
Spatial Calculus of Looping Sequences. Theor. Comput. Sci. 412(43): 5976-6001 (2011) - [j39]Roberto Barbuti, Giulio Caravagna, Andrea Maggiolo-Schettini, Paolo Milazzo:
Delay Stochastic Simulation of Biological Systems: A Purely Delayed Approach. Trans. Comp. Sys. Biology 13: 61-84 (2011) - [i2]Roberto Barbuti, Diletta Romana Cacciagrano, Andrea Maggiolo-Schettini, Paolo Milazzo, Luca Tesei:
A Testing Framework for P Systems. CoRR abs/1108.3424 (2011) - 2010
- [j37]Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo, Damas P. Gruska:
A Notion of Biological Diagnosability Inspired by the Notion of Opacity in Systems Security. Fundam. Informaticae 102(1): 19-34 (2010) - [j36]Roberto Barbuti, Andrea Maggiolo-Schettini, Angelo Troina, Mariangiola Dezani-Ciancaglini, Paolo Milazzo:
A Formalism for the Description of Protein Interaction Dedicated to Jerzy Tiuryn on the Occasion of his 60th Birthday. Fundam. Informaticae 103(1-4): 1-29 (2010) - [j35]Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo, Simone Tini:
Compositional semantics of spiking neural P systems. J. Log. Algebraic Methods Program. 79(6): 304-316 (2010) - [c33]Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo, Simone Tini:
Membrane Systems Working in Generating and Accepting Modes: Expressiveness and Encodings. Int. Conf. on Membrane Computing 2010: 103-118 - [c32]Thomas Anung Basuki, Antonio Cerone, Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo, Elisabetta Rossi:
Modelling the Dynamics of an Aedes albopictus Population. AMCA-POP 2010: 18-36 - [c31]Roberto Barbuti, Giulio Caravagna, Paolo Milazzo, Andrea Maggiolo-Schettini, Simone Tini:
Aspects of multiscale modelling in a process algebra for biological systems. MeCBIC 2010: 54-69 - [i1]Roberto Barbuti, Giovanni A. Cignoni, Paolo Milazzo:
A Model for Configuration Management of Open Software Systems. CoRR abs/1011.5389 (2010) - 2009
- [j34]Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo, Simone Tini:
P Systems with Transport and Diffusion Membrane Channels. Fundam. Informaticae 93(1-3): 17-31 (2009) - [j33]Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo, Luca Tesei:
Timed P Automata. Fundam. Informaticae 94(1): 1-19 (2009) - [j32]Roberto Barbuti, Giulio Caravagna, Andrea Maggiolo-Schettini, Paolo Milazzo:
P Systems with Endosomes. Int. J. Comput. Commun. Control 4(3): 214-223 (2009) - [j31]Roberto Barbuti, Giulio Caravagna, Andrea Maggiolo-Schettini, Paolo Milazzo:
An intermediate language for the stochastic simulation of biological systems. Theor. Comput. Sci. 410(33-34): 3085-3109 (2009) - [c30]Roberto Barbuti, Daniela Lepri, Andrea Maggiolo-Schettini, Paolo Milazzo, Giovanni Pardini, Aureliano Rama:
Simulation of Kohn's Molecular Interaction Maps through Translation into Stochastic CLS+. Ershov Memorial Conference 2009: 58-69 - [c29]Roberto Barbuti, Francesca Levi, Paolo Milazzo, Guido Scatena:
Probabilistic Model Checking of Biological Systems with Uncertain Kinetic Rates. RP 2009: 64-78 - [c28]Roberto Barbuti, Giulio Caravagna, Paolo Milazzo, Andrea Maggiolo-Schettini:
On the Interpretation of Delays in Delay Stochastic Simulation of Biological Systems. COMPMOD 2009: 17-29 - [c27]Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo, Giovanni Pardini, Aureliano Rama:
A Process Calculus for Molecular Interaction Maps. MeCBIC 2009: 35 - 2008
- [j29]Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo, Angelo Troina:
Bisimulations in calculi modelling membranes. Formal Aspects Comput. 20(4-5): 351-377 (2008) - [j28]Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo, Simone Tini:
A P Systems Flat Form Preserving Step-by-step Behaviour. Fundam. Informaticae 87(1): 1-34 (2008) - [j27]Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo, Simone Tini:
Compositional semantics and behavioral equivalences for P Systems. Theor. Comput. Sci. 395(1): 77-100 (2008) - [j26]Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo, Paolo Tiberi, Angelo Troina:
Stochastic Calculus of Looping Sequences for the Modelling and Simulation of Cellular Pathways. Trans. Comp. Sys. Biology 9: 86-113 (2008) - [c26]Roberto Barbuti, Giulio Caravagna, Andrea Maggiolo-Schettini, Paolo Milazzo, Giovanni Pardini:
The Calculus of Looping Sequences. SFM 2008: 387-423 - [c25]Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo, Giovanni Pardini:
Spatial Calculus of Looping Sequences. FBTC@ICALP 2008: 21-39 - [c24]Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo, Luca Tesei:
Timed P Automata. MeCBIC 2008: 21-36 - 2007
- [c23]Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo:
Extending the Calculus of Looping Sequences to Model Protein Interaction at the Domain Level. ISBRA 2007: 638-649 - [c22]Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo, Angelo Troina:
The Calculus of Looping Sequences for Modeling Biological Membranes. Workshop on Membrane Computing 2007: 54-76 - [c21]Roberto Barbuti, Giulio Caravagna, Andrea Maggiolo-Schettini, Paolo Milazzo:
An Intermediate Language for the Simulation of Biological Systems. FBTC@CONCUR 2007: 19-34 - 2006
- [j25]Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo, Angelo Troina:
A Calculus of Looping Sequences for Modelling Microbiological Systems. Fundam. Informaticae 72(1-3): 21-35 (2006) - [c20]Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo, Angelo Troina:
Bisimulation Congruences in the Calculus of Looping Sequences. ICTAC 2006: 93-107 - 2005
- [j22]Roberto Barbuti, Stefano Cataudella, Andrea Maggiolo-Schettini, Paolo Milazzo, Angelo Troina:
A Probabilistic Model for Molecular Systems. Fundam. Informaticae 67(1-3): 13-27 (2005)
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