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John S. Aberdeen
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Publications
- 2021
- [j17]Robyn Kozierok, John S. Aberdeen, Cheryl Clark, Christopher D. Garay, Bradley Goodman, Tonia Korves, Lynette Hirschman, Patricia L. McDermott, Matthew W. Peterson:
Assessing Open-Ended Human-Computer Collaboration Systems: Applying a Hallmarks Approach. Frontiers Artif. Intell. 4: 670009 (2021) - [i1]Robyn Kozierok, John S. Aberdeen, Cheryl Clark, Christopher D. Garay, Bradley Goodman, Tonia Korves, Lynette Hirschman, Patricia L. McDermott, Matthew W. Peterson:
Hallmarks of Human-Machine Collaboration: A framework for assessment in the DARPA Communicating with Computers Program. CoRR abs/2102.04958 (2021) - 2020
- [j16]David S. Carrell, Bradley A. Malin, David J. Cronkite, John S. Aberdeen, Cheryl Clark, Muqun (Rachel) Li, Dikshya Bastakoty, Steve Nyemba, Lynette Hirschman:
Resilience of clinical text de-identified with "hiding in plain sight" to hostile reidentification attacks by human readers. J. Am. Medical Informatics Assoc. 27(9): 1374-1382 (2020) - 2019
- [j14]David S. Carrell, David J. Cronkite, Muqun (Rachel) Li, Steve Nyemba, Bradley A. Malin, John S. Aberdeen, Lynette Hirschman:
The machine giveth and the machine taketh away: a parrot attack on clinical text deidentified with hiding in plain sight. J. Am. Medical Informatics Assoc. 26(12): 1536-1544 (2019) - 2018
- [c24]Stéphane M. Meystre, David S. Carrell, Lynette Hirschman, John S. Aberdeen, Paul Fearn, Valentina Petkov, Jonathan C. Silverstein:
Automatic Text De-Identification: How and When is it Acceptable? AMIA 2018 - 2016
- [j13]Muqun Li, David Carrell, John S. Aberdeen, Lynette Hirschman, Jacqueline Kirby, Bo Li, Yevgeniy Vorobeychik, Bradley A. Malin:
Optimizing annotation resources for natural language de-identification via a game theoretic framework. J. Biomed. Informatics 61: 97-109 (2016) - 2015
- [j12]Ritu Khare, John D. Burger, John S. Aberdeen, David Tresner-Kirsch, Theodore J. Corrales, Lynette Hirschman, Zhiyong Lu:
Scaling drug indication curation through crowdsourcing. Database J. Biol. Databases Curation 2015 (2015) - 2014
- [j10]John D. Burger, Emily Doughty, Ritu Khare, Chih-Hsuan Wei, Rajashree Mishra, John S. Aberdeen, David Tresner-Kirsch, Ben Wellner, Maricel G. Kann, Zhiyong Lu, Lynette Hirschman:
Hybrid curation of gene-mutation relations combining automated extraction and crowdsourcing. Database J. Biol. Databases Curation 2014 (2014) - [j9]Muqun Li, David Carrell, John S. Aberdeen, Lynette Hirschman, Bradley A. Malin:
De-identification of clinical narratives through writing complexity measures. Int. J. Medical Informatics 83(10): 750-767 (2014) - 2013
- [j8]David A. Hanauer, John S. Aberdeen, Samuel Bayer, Benjamin Wellner, Cheryl Clark, Kai Zheng, Lynette Hirschman:
Bootstrapping a de-identification system for narrative patient records: Cost-performance tradeoffs. Int. J. Medical Informatics 82(9): 821-831 (2013) - [j7]David Carrell, Bradley A. Malin, John S. Aberdeen, Samuel Bayer, Cheryl Clark, Ben Wellner, Lynette Hirschman:
Hiding in plain sight: use of realistic surrogates to reduce exposure of protected health information in clinical text. J. Am. Medical Informatics Assoc. 20(2): 342-348 (2013) - 2012
- [c21]John D. Burger, Emily Doughty, Samuel Bayer, David Tresner-Kirsch, Ben Wellner, John S. Aberdeen, Kyungjoon Lee, Maricel G. Kann, Lynette Hirschman:
Validating Candidate Gene-Mutation Relations in MEDLINE Abstracts via Crowdsourcing. DILS 2012: 83-91 - 2011
- [j5]Cheryl Clark, John S. Aberdeen, Matthew Coarr, David Tresner-Kirsch, Ben Wellner, Alexander S. Yeh, Lynette Hirschman:
MITRE system for clinical assertion status classification. J. Am. Medical Informatics Assoc. 18(5): 563-567 (2011) - 2010
- [j3]John S. Aberdeen, Samuel Bayer, Reyyan Yeniterzi, Benjamin Wellner, Cheryl Clark, David A. Hanauer, Bradley A. Malin, Lynette Hirschman:
The MITRE Identification Scrubber Toolkit: Design, training, and assessment. Int. J. Medical Informatics 79(12): 849-859 (2010) - [j2]Reyyan Yeniterzi, John S. Aberdeen, Samuel Bayer, Benjamin Wellner, Lynette Hirschman, Bradley A. Malin:
Effects of personal identifier resynthesis on clinical text de-identification. J. Am. Medical Informatics Assoc. 17(2): 159-168 (2010) - [c20]Lynette Hirschman, John S. Aberdeen:
Measuring Risk and Information Preservation: Toward New Metrics for De-identification of Clinical Texts. Louhi@NAACL-HLT 2010: 72-75 - 2007
- [j1]Ben Wellner, Matt Huyck, Scott A. Mardis, John S. Aberdeen, Alexander A. Morgan, Leonid Peshkin, Alexander S. Yeh, Janet Hitzeman, Lynette Hirschman:
Research Paper: Rapidly Retargetable Approaches to De-identification in Medical Records. J. Am. Medical Informatics Assoc. 14(5): 564-573 (2007) - 2001
- [c13]Marilyn A. Walker, John S. Aberdeen, Julie E. Boland, Elizabeth Owen Bratt, John S. Garofolo, Lynette Hirschman, Audrey N. Le, Sungbok Lee, Shrikanth S. Narayanan, Kishore Papineni, Bryan L. Pellom, Joseph Polifroni, Alexandros Potamianos, P. Prabhu, Alexander I. Rudnicky, Gregory A. Sanders, Stephanie Seneff, David Stallard, Steve Whittaker:
DARPA communicator dialog travel planning systems: the june 2000 data collection. INTERSPEECH 2001: 1371-1374 - [c12]John S. Aberdeen, Christine Doran, Laurie E. Damianos, Samuel Bayer, Lynette Hirschman:
Finding Errors Automatically in Semantically Tagged Dialogues. HLT 2001 - [c11]Christine Doran, John S. Aberdeen, Laurie E. Damianos, Lynette Hirschman:
Comparing Several Aspects of Human-Computer and Human-Human Dialogues. SIGDIAL Workshop 2001 - 2000
- [c10]Marilyn A. Walker, Lynette Hirschman, John S. Aberdeen:
Evaluation for Darpa Communicator Spoken Dialogue Systems. LREC 2000 - 1998
- [c9]David S. Day, John S. Aberdeen, Sasha Caskey, Lynette Hirschman, Patricia Robinson, Marc B. Vilain:
Alembic Workbench corpus developrnent tool. LREC 1998: 1021-1030 - 1997
- [c8]David S. Day, John S. Aberdeen, Lynette Hirschman, Robyn Kozierok, Patricia Robinson, Marc B. Vilain:
Mixed-Initiative Development of Language Processing Systems. ANLP 1997: 348-355 - 1996
- [c7]John S. Aberdeen, John D. Burger, David S. Day, Lynette Hirschman, David D. Palmer, Patricia Robinson, Marc B. Vilain:
MITRE: Description of the Alembic System as used in MET. TIPSTER 1996: 461-462 - 1995
- [c5]Marc B. Vilain, John D. Burger, John S. Aberdeen, Dennis Connolly, Lynette Hirschman:
A model-theoretic coreference scoring scheme. MUC 1995: 45-52 - [c4]John S. Aberdeen, John D. Burger, David S. Day, Lynette Hirschman, Patricia Robinson, Marc B. Vilain:
MITRE: description of the Alembic system used for MUC-6. MUC 1995: 141-155
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