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ORCIDMary Brophy
- > Home > Persons > Mary Brophy
Publications
- 2023
[j5]Eric Lin
, Robert Zwolinski, Julie Tsu-Yu Wu, Jennifer La, Sergey Goryachev, Linden B. Huhmann, Cenk Yildirim, David P. Tuck, Danne C. Elbers, Mary T. Brophy, Nhan V. Do, Nathanael R. Fillmore:
Machine learning-based natural language processing to extract PD-L1 expression levels from clinical notes. Health Informatics J. 29(3) (2023)- [c13]Matthew Clark, Christopher Meyer, Jaime Ramos-Cejudo, Danne C. Elbers, Karen E. Pierce-Murray, Rafael Fricks, Gil Alterovitz, Luigi Rao, Mary T. Brophy, Nhan V. Do, Robert L. Grossman, Nathanael R. Fillmore:
Transfer Learning for Mortality Prediction in Non-Small Cell Lung Cancer with Low-Resolution Histopathology Slide Snapshots. MedInfo 2023: 735-739 - [c12]Nhan V. Do, Danne C. Elbers, Nathanael R. Fillmore, Samuel Ajjarapu, Steven J. Bergstrom, John Bihn, June K. Corrigan, Rupali Dhond, Svitlana Dipietro, Arkadiy Dolgin, Theodore C. Feldman, Sergey D. Goryachev, Linden B. Huhmann, Jennifer La, Paul A. Marcantonio, Kyle M. McGrath, Stephen J. Miller, Vinh Q. Nguyen, George R. Schneeloch, Feng-Chi Sung, Kaitlin N. Swinnerton, Amelia H. Tarren, Hannah M. Tosi, Danielle Valley, Austin D. Vo, Cenk Yildirim, Chunlei Zheng, Robert Zwolinski, Gisele A. Sarosy, David Loose, Colleen Shannon, Mary T. Brophy:
Matching Patients to Accelerate Clinical Trials (MPACT): Enabling Technology for Oncology Clinical Trial Workflow. MedInfo 2023: 1086-1090 - [c11]Danne C. Elbers, Nathanael R. Fillmore, Jennifer La, Hannah M. Tosi, Samuel Ajjarapu, Rupali Dhond, Karen E. Murray, Danielle Valley, Colleen Shannon, Mary T. Brophy, Nhan V. Do:
Building Research Infrastructure to Develop Greater Learning Efficiencies (BRIDGE). MedInfo 2023: 1131-1135 - 2022
- [c9]Austin D. Vo, Danne C. Elbers, Theodore C. Feldman, Paul A. Marcantonio, Anahit Aleksanyan, Nhan Vo, Feng-Chi Sung, Svitlana Dipietro, Arkadiy Dolgin, Rupali Dhond, Mary Brophy, Nathanael Fillmore, David Kaplan, Nhan V. Do:
Better PROSPECT for cancer care: Supporting the generation and delivery of knowledge for decision making at tumor boards with the Precision Oncology System for Prediction, Engineering, and Clinical Translation (PROSPECT). AMIA 2022 - 2021
- [j4]Nathanael R. Fillmore, Danne C. Elbers, Jennifer La, Theodore C. Feldman, Sung Feng-Chi, Robert B. Hall, Vinh Q. Nguyen, Nicholas B. Link, Robert Zwolinski, Svitlana Dipietro, Stephen J. Miller, Anahit Aleksanyan, Sergey Goryachev, Paul Corcoran, Steven J. Bergstrom, Michael A. Parenteau, Robert S. Sprague, David J. Thornton, Jane A. Driver, Judith M. Strymish, Stewart Evans, Benjamin Colonna, Mary T. Brophy, Nhan V. Do:
Corrigendum to: An Application to Support COVID-19 Occupational Health and Patient Tracking at a Veterans Affairs Medical Center. J. Am. Medical Informatics Assoc. 28(3): 673 (2021) - 2020
- [j3]Nathanael R. Fillmore, Danne C. Elbers, Jennifer La, Theodore C. Feldman, Sung Feng-Chi, Robert B. Hall, Vinh Q. Nguyen, Nicholas B. Link, Robert Zwolinski, Svitlana Dipietro, Steven J. Miller, Anahit Aleksanyan, Sergey Goryachev, Paul Corcoran, Steven J. Bergstrom, Michael A. Parenteau, Robert S. Sprague, David J. Thornton, Jane A. Driver, Judith M. Strymish, Stewart Evans, Benjamin Colonna, Mary T. Brophy, Nhan V. Do:
An application to support COVID-19 occupational health and patient tracking at a Veterans Affairs medical center. J. Am. Medical Informatics Assoc. 27(11): 1716-1720 (2020) - [j2]Danne C. Elbers, Nathanael R. Fillmore, Sung Feng-Chi, Spyridon S. Ganas, Alexander M. Prokhorenkov, Christopher Meyer, Robert B. Hall, Samuel Ajjarapu, Daniel C. Chen, Frank Meng, Robert L. Grossman, Mary T. Brophy, Nhan V. Do:
The Veterans Affairs Precision Oncology Data Repository, a Clinical, Genomic, and Imaging Research Database. Patterns 1(6): 100083 (2020) - [c7]Theodore C. Feldman, Nathanael Fillmore, Sandy Chon, Shahin Assefnia, David Loose, Gisele A. Sarosy, Jennifer La, David Cheng, Frank Meng, Danielle Valley, Robert B. Hall, Paul Corcoran, Robert Zwolinski, Danne C. Elbers, Mary T. Brophy, Nhan V. Do:
Veterans Health Administration (VHA) and National Cancer Institute (NCI) Interagency Preliminary Computable Phenotypes for the VA-NCI Interagency Clinical Trial Optimizer for Recruitment and Enrollment (VICTOR-E). AMIA 2020 - 2019
- [c5]Nhan V. Do, Jaime C. Ramos, Nathanael R. Fillmore, Robert L. Grossman, Michael Fitzsimons, Danne C. Elbers, Frank Meng, Brett R. Johnson, Samuel Ajjarapu, Corri L. DeDomenico, Karen E. Pierce-Murray, Robert B. Hall, Andrew F. Do, Kelly Gaynor, Peter L. Elkin, Mary T. Brophy:
Machine Learning Methods to Predict Lung Cancer Survival Using the Veterans Affairs Research Precision Oncology Data Commons. MedInfo 2019: 1453 - 2018
- [c4]Nhan V. Do, J. J. Bono, Nathanael Fillmore, Andrew J. Zimolzak, Brett R. Johnson, Frank Meng, Danne C. Elbers, Robert B. Hall, Samuel Ajjarapu, Mary T. Brophy, Peter L. Elkin:
Development of an AI empowered Electronic Molecular Tumor Board Application Connected Utilizing the SMART on FHIR Framework. AMIA 2018 - [c3]Danne C. Elbers, Frank Meng, Scott Doyle, Sylvester Sakilay, Sung Feng-Chi, Brett R. Johnson, Robert B. Hall, Nathanael Fillmore, Daniel Chen, Alexander D. Diehl, Samuel Ajjarapu, Karen E. Pierce-Murray, Corri DeDomenico, Colleen Shannon, Sara Schiller, Nhan V. Do, Peter L. Elkin, Louis D. Fiore, Mary T. Brophy:
The Implementation of the Precision Oncology Data Repository in the Veterans Affairs Healthcare System. AMIA 2018 - 2017
- [c2]Samuel Ajjarapu, Frank Meng, Danne C. Elbers, Nhan V. Do, Robert B. Hall, Karen E. Pierce-Murray, Luis E. Selva, Beth Katcher, Brett R. Johnson, Andrew J. Zimolzak, Corri DeDomenico, Mary Brophy, Louis D. Fiore:
Releasing De-Identified Clinical, Imaging, and Genomic Data from the VA to External Repositories for the APOLLO Network. AMIA 2017 - [c1]Nhan V. Do, Karen E. Pierce-Murray, Edmund C. Peirce, Corri DeDomenico, Frank Meng, Danne C. Elbers, Beth Katcher, Robert B. Hall, Andrew J. Zimolzak, Samuel Ajjarapu, Colleen Shannon, Sara Turek, Brett R. Johnson, Nathanael Fillmore, Mary Brophy, Louis D. Fiore:
The Development of the Research Precision Oncology Program Data Repository (PODR) in the Veterans Affairs Healthcare System. AMIA 2017
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