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Stephen H. Bryant
- > Home > Persons > Stephen H. Bryant
Publications
- 2020
- [j76]Jiyao Wang, Philippe Youkharibache, Dachuan Zhang, Christopher J. Lanczycki, Renata C. Geer, Thomas Madej, Lon Phan, Minghong Ward, Shennan Lu, Gabriele H. Marchler, Yanli Wang, Stephen H. Bryant, Lewis Y. Geer, Aron Marchler-Bauer:
iCn3D, a web-based 3D viewer for sharing 1D/2D/3D representations of biomolecular structures. Bioinform. 36(1): 131-135 (2020) - 2019
- [j75]Ming Hao, Stephen H. Bryant, Yanli Wang:
Open-source chemogenomic data-driven algorithms for predicting drug-target interactions. Briefings Bioinform. 20(4): 1465-1474 (2019) - 2018
- [j74]Ming Hao, Stephen H. Bryant, Yanli Wang:
A new chemoinformatics approach with improved strategies for effective predictions of potential drugs. J. Cheminformatics 10(1): 50:1-50:9 (2018) - 2017
- [j73]Amrita Roy Choudhury, Tiejun Cheng, Lon Phan, Stephen H. Bryant, Yanli Wang:
Supporting precision medicine by data mining across multi-disciplines: an integrative approach for generating comprehensive linkages between single nucleotide variants (SNVs) and drug-binding sites. Bioinform. 33(11): 1621-1629 (2017) - [j72]Takako Takeda, Ming Hao, Tiejun Cheng, Stephen H. Bryant, Yanli Wang:
Predicting drug-drug interactions through drug structural similarities and interaction networks incorporating pharmacokinetics and pharmacodynamics knowledge. J. Cheminformatics 9(1): 16:1-16:9 (2017) - [j70]Yanli Wang, Stephen H. Bryant, Tiejun Cheng, Jiyao Wang, Asta Gindulyte, Benjamin A. Shoemaker, Paul A. Thiessen, Siqian He, Jian Zhang:
PubChem BioAssay: 2017 update. Nucleic Acids Res. 45(Database-Issue): D955-D963 (2017) - 2016
- [j69]Takako Takeda, Yanli Wang, Stephen H. Bryant:
Structural insights of a PI3K/mTOR dual inhibitor with the morpholino-triazine scaffold. J. Comput. Aided Mol. Des. 30(4): 323-330 (2016) - [j68]Sunghwan Kim, Paul A. Thiessen, Tiejun Cheng, Bo Yu, Benjamin A. Shoemaker, Jiyao Wang, Evan Bolton, Yanli Wang, Stephen H. Bryant:
Literature information in PubChem: associations between PubChem records and scientific articles. J. Cheminformatics 8(1): 32:1-32:15 (2016) - [j67]Ming Hao, Stephen H. Bryant, Yanli Wang:
Cheminformatics analysis of the AR agonist and antagonist datasets in PubChem. J. Cheminformatics 8(1): 37:1-37:13 (2016) - 2014
- [j59]Yongmei Pan, Tiejun Cheng, Yanli Wang, Stephen H. Bryant:
Pathway Analysis for Drug Repositioning Based on Public Database Mining. J. Chem. Inf. Model. 54(2): 407-418 (2014) - [j57]Yanli Wang, Tugba O. Suzek, Jian Zhang, Jiyao Wang, Siqian He, Tiejun Cheng, Benjamin A. Shoemaker, Asta Gindulyte, Stephen H. Bryant:
PubChem BioAssay: 2014 update. Nucleic Acids Res. 42(Database-Issue): 1075-1082 (2014) - 2013
- [j54]Yongmei Pan, Yanli Wang, Stephen H. Bryant:
Pharmacophore and 3D-QSAR Characterization of 6-Arylquinazolin-4-amines as Cdc2-like Kinase 4 (Clk4) and Dual Specificity Tyrosine-phosphorylation-regulated Kinase 1A (Dyrk1A) Inhibitors. J. Chem. Inf. Model. 53(4): 938-947 (2013) - 2012
- [j51]Tiejun Cheng, Yanli Wang, Stephen H. Bryant:
FSelector: a Ruby gem for feature selection. Bioinform. 28(21): 2851-2852 (2012) - [j49]Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Ian M. Fingerman, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, Sergey Krasnov, David Landsman, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer, Vadim Miller, Ilene Karsch-Mizrachi, James Ostell, Anna R. Panchenko, Lon Phan, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye:
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 40(Database-Issue): 13-25 (2012) - [j48]Yanli Wang, Jewen Xiao, Tugba O. Suzek, Jian Zhang, Jiyao Wang, Zhigang Zhou, Lianyi Han, Karen Karapetyan, Svetlana Dracheva, Benjamin A. Shoemaker, Evan Bolton, Asta Gindulyte, Stephen H. Bryant:
PubChem's BioAssay Database. Nucleic Acids Res. 40(Database-Issue): 400-412 (2012) - [j47]Thomas Madej, Kenneth J. Addess, Jessica H. Fong, Lewis Y. Geer, Renata C. Geer, Christopher J. Lanczycki, Chunlei Liu, Shennan Lu, Aron Marchler-Bauer, Anna R. Panchenko, Jie Chen, Paul A. Thiessen, Yanli Wang, Dachuan Zhang, Stephen H. Bryant:
MMDB: 3D structures and macromolecular interactions. Nucleic Acids Res. 40(Database-Issue): 461-464 (2012) - 2011
- [j37]Tiejun Cheng, Qingliang Li, Yanli Wang, Stephen H. Bryant:
Binary Classification of Aqueous Solubility Using Support Vector Machines with Reduction and Recombination Feature Selection. J. Chem. Inf. Model. 51(2): 229-236 (2011) - [j36]Tiejun Cheng, Qingliang Li, Yanli Wang, Stephen H. Bryant:
Identifying Compound-Target Associations by Combining Bioactivity Profile Similarity Search and Public Databases Mining. J. Chem. Inf. Model. 51(9): 2440-2448 (2011) - [j35]Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Ian M. Fingerman, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David Landsman, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer, Vadim Miller, Ilene Mizrachi, James Ostell, Anna R. Panchenko, Lon Phan, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye:
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 39(Database-Issue): 38-51 (2011) - 2010
- [j33]Tiejun Cheng, Yanli Wang, Stephen H. Bryant:
Investigating the correlations among the chemical structures, bioactivity profiles and molecular targets of small molecules. Bioinform. 26(22): 2881-2888 (2010) - [j30]Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David Landsman, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer, Vadim Miller, Ilene Mizrachi, James Ostell, Anna R. Panchenko, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye:
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 38(Database-Issue): 5-16 (2010) - [j29]Yanli Wang, Evan Bolton, Svetlana Dracheva, Karen Karapetyan, Benjamin A. Shoemaker, Tugba O. Suzek, Jiyao Wang, Jewen Xiao, Jian Zhang, Stephen H. Bryant:
An overview of the PubChem BioAssay resource. Nucleic Acids Res. 38(Database-Issue): 255-266 (2010) - 2009
- [j26]Lianyi Han, Yanli Wang, Stephen H. Bryant:
A survey of across-target bioactivity results of small molecules in PubChem. Bioinform. 25(17): 2251-2255 (2009) - [j25]Qingliang Li, Yanli Wang, Stephen H. Bryant:
A novel method for mining highly imbalanced high-throughput screening data in PubChem. Bioinform. 25(24): 3310-3316 (2009) - [j24]Zhigang Zhou, Yanli Wang, Stephen H. Bryant:
Computational analysis of the cathepsin B inhibitors activities through LR-MMPBSA binding affinity calculation based on docked complex. J. Comput. Chem. 30(14): 2165-2175 (2009) - [j20]Yanli Wang, Jewen Xiao, Tugba O. Suzek, Jian Zhang, Jiyao Wang, Stephen H. Bryant:
PubChem: a public information system for analyzing bioactivities of small molecules. Nucleic Acids Res. 37(Web-Server-Issue): 623-633 (2009) - [c2]Yanli Wang, Stephen H. Bryant:
PubChem: The NIH Public Repository for Small Molecules and Biological Screening Results. BIOCOMP 2009: 726-728 - 2008
- [j19]Lianyi Han, Yanli Wang, Stephen H. Bryant:
Developing and validating predictive decision tree models from mining chemical structural fingerprints and high-throughput screening data in PubChem. BMC Bioinform. 9 (2008) - 2007
- [j14]Yanli Wang, Kenneth J. Addess, Jie Chen, Lewis Y. Geer, Jane He, Siqian He, Shennan Lu, Thomas Madej, Aron Marchler-Bauer, Paul A. Thiessen, Naigong Zhang, Stephen H. Bryant:
MMDB: annotating protein sequences with Entrez's 3D-structure database. Nucleic Acids Res. 35(Database-Issue): 298-300 (2007) - 2003
- [j7]Aron Marchler-Bauer, John B. Anderson, Carol DeWeese-Scott, Natalie D. Fedorova, Lewis Y. Geer, Siqian He, David I. Hurwitz, John D. Jackson, Aviva R. Jacobs, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Thomas Madej, Gabriele H. Marchler, Raja Mazumder, Anastasia N. Nikolskaya, Anna R. Panchenko, Bachoti S. Rao, Benjamin A. Shoemaker, Vahan Simonyan, James S. Song, Paul A. Thiessen, Sona Vasudevan, Yanli Wang, Roxanne A. Yamashita, Jodie J. Yin, Stephen H. Bryant:
CDD: a curated Entrez database of conserved domain alignments. Nucleic Acids Res. 31(1): 383-387 (2003) - [j6]Jie Chen, John B. Anderson, Carol DeWeese-Scott, Natalie D. Fedorova, Lewis Y. Geer, Siqian He, David I. Hurwitz, John D. Jackson, Aviva R. Jacobs, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Thomas Madej, Aron Marchler-Bauer, Gabriele H. Marchler, Raja Mazumder, Anastasia N. Nikolskaya, Bachoti S. Rao, Anna R. Panchenko, Benjamin A. Shoemaker, Vahan Simonyan, James S. Song, Paul A. Thiessen, Sona Vasudevan, Yanli Wang, Roxanne A. Yamashita, Jodie J. Yin, Stephen H. Bryant:
MMDB: Entrez's 3D-structure database. Nucleic Acids Res. 31(1): 474-477 (2003) - 2002
- [j5]Yanli Wang, John B. Anderson, Jie Chen, Lewis Y. Geer, Siqian He, David I. Hurwitz, Cynthia A. Liebert, Thomas Madej, Gabriele H. Marchler, Aron Marchler-Bauer, Anna R. Panchenko, Benjamin A. Shoemaker, James S. Song, Paul A. Thiessen, Roxanne A. Yamashita, Stephen H. Bryant:
MMDB: Entrez's 3D-structure database. Nucleic Acids Res. 30(1): 249-252 (2002) - 2000
- [j2]Yanli Wang, Kenneth J. Addess, Lewis Y. Geer, Thomas Madej, Aron Marchler-Bauer, Diane Zimmerman, Stephen H. Bryant:
MMDB: 3D structure data in Entrez. Nucleic Acids Res. 28(1): 243-245 (2000) - 1999
- [j1]Aron Marchler-Bauer, Kenneth J. Addess, Colombe Chappey, Lewis Y. Geer, Thomas Madej, Yo Matsuo, Yanli Wang, Stephen H. Bryant:
MMDB: Entrez's 3D structure database. Nucleic Acids Res. 27(1): 240-243 (1999)
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