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Shili Lin
Publications
- 2019
- [j23]Jincheol Park, Shili Lin:
Evaluation and comparison of methods for recapitulation of 3D spatial chromatin structures. Briefings Bioinform. 20(4): 1205-1214 (2019) - 2016
- [j21]Deepak Nag Ayyala, David E. Frankhouser, Javkhlan-Ochir Ganbat, Guido Marcucci, Ralf Bundschuh, Pearlly Yan, Shili Lin:
Statistical methods for detecting differentially methylated regions based on MethylCap-seq data. Briefings Bioinform. 17(6): 926-937 (2016) - [j20]Jincheol Park, Shili Lin:
Impact of data resolution on three-dimensional structure inference methods. BMC Bioinform. 17: 70 (2016) - 2015
- [j16]Deepak Nag Ayyala, Shili Lin:
GrammR: graphical representation and modeling of count data with application in metagenomics. Bioinform. 31(10): 1648-1654 (2015) - 2014
- [j14]David E. Frankhouser, Mark Murphy, James S. Blachly, Jincheol Park, Mike W. Zoller, Javkhlan-Ochir Ganbat, John Curfman, John C. Byrd, Shili Lin, Guido Marcucci, Pearlly Yan, Ralf Bundschuh:
PrEMeR-CG: inferring nucleotide level DNA methylation values from MethylCap-seq data. Bioinform. 30(24): 3567-3574 (2014) - [j13]Cenny Taslim, Shili Lin:
A Mixture Modeling Framework for Differential Analysis of High-Throughput Data. Comput. Math. Methods Medicine 2014: 758718:1-758718:9 (2014) - 2011
- [j12]Shuying Sun, Yi-Wen Huang, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin:
Preprocessing differential methylation hybridization microarray data. BioData Min. 4: 13 (2011) - [j11]Cenny Taslim, Tim Hui-Ming Huang, Shili Lin:
DIME: R-package for identifying differential ChIP-seq based on an ensemble of mixture models. Bioinform. 27(11): 1569-1570 (2011) - [j10]Shuying Sun, Zhengyi Chen, Pearlly Yan, Yi-Wen Huang, Tim Hui-Ming Huang, Shili Lin:
Identifying hypermethylated CpG islands using a quantile regression model. BMC Bioinform. 12: 54 (2011) - [c2]Cenny Taslim, Shili Lin, Kun Huang, Tim Hui-Ming Huang:
Chromatin signature analysis and prediction of genome-wide novel promoters using finite mixture model. GENSiPS 2011: 13-16 - 2009
- [j8]Cenny Taslim, Jiejun Wu, Pearlly Yan, Greg Singer, Jeffrey D. Parvin, Tim Hui-Ming Huang, Shili Lin, Kun Huang:
Comparative study on ChIP-seq data: normalization and binding pattern characterization. Bioinform. 25(18): 2334-2340 (2009) - [j7]Shuying Sun, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin:
Identifying differentially methylated genes using mixed effect and generalized least square models. BMC Bioinform. 10: 404 (2009) - [j6]Abbas Khalili, Tim Hui-Ming Huang, Shili Lin:
A robust unified approach to analyzing methylation and gene expression data. Comput. Stat. Data Anal. 53(5): 1701-1710 (2009) - 2008
- [j5]Dustin P. Potter, Pearlly Yan, Tim Hui-Ming Huang, Shili Lin:
Probe signal correction for differential methylation hybridization experiments. BMC Bioinform. 9 (2008) - 2007
- [j4]Zailong Wang, Pearlly Yan, Dustin P. Potter, Charis Eng, Tim Hui-Ming Huang, Shili Lin:
Heritable clustering and pathway discovery in breast cancer integrating epigenetic and phenotypic data. BMC Bioinform. 8 (2007)
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