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2018
[j15]
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Benjamín Tovar, Rafael Ferreira da Silva, Gideon Juve, Ewa Deelman, William E. Allcock, Douglas Thain, Miron Livny:
A Job Sizing Strategy for High-Throughput Scientific Workflows. IEEE Trans. Parallel Distrib. Syst. 29(2): 240-253 (2018)
2017
[j14]
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Idafen Santana-Pérez, Rafael Ferreira da Silva, Mats Rynge, Ewa Deelman, María S. Pérez-Hernández, Óscar Corcho:
Reproducibility of execution environments in computational science using Semantics and Clouds. Future Generation Comp. Syst. 67: 354-367 (2017)
[j13]
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Rafael Ferreira da Silva, Rosa Filgueira, Ilia Pietri, Ming Jiang, Rizos Sakellariou, Ewa Deelman:
A characterization of workflow management systems for extreme-scale applications. Future Generation Comp. Syst. 75: 228-238 (2017)
[j12]
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Tristan Glatard, Marc-Etienne Rousseau, Sorina Camarasu-Pop, Reza Adalat, Natacha Beck, Samir Das, Rafael Ferreira da Silva, Najmeh Khalili-Mahani, Vladimir Korkhov, Pierre-Olivier Quirion, Pierre Rioux, Sílvia D. Olabarriaga, Pierre Bellec, Alan C. Evans:
Software architectures to integrate workflow engines in science gateways. Future Generation Comp. Syst. 75: 239-255 (2017)
[j11]
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Ewa Deelman, Christopher D. Carothers, Anirban Mandal, Brian Tierney, Jeffrey S. Vetter, Ilya Baldin, Claris Castillo, Gideon Juve, Dariusz Król, Vickie E. Lynch, Benjamin Mayer, Jeremy S. Meredith, Thomas Proffen, Paul Ruth, Rafael Ferreira da Silva:
PANORAMA: An approach to performance modeling and diagnosis of extreme-scale workflows. IJHPCA 31(1): 4-18 (2017)
[c28]
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Anirban Mandal, Paul Ruth, Ilya Baldin, Rafael Ferreira da Silva, Ewa Deelman:
Toward Prioritization of Data Flows for Scientific Workflows Using Virtual Software Defined Exchanges. eScience 2017: 566-575
[c27]
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  - conf/hpec/LynchCDSGHLV17
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Vickie E. Lynch, Jose Borreguero Calvo, Ewa Deelman, Rafael Ferreira da Silva, Monojoy Goswami, Yawei Hui, Eric J. Lingerfelt, Jeffrey S. Vetter:
Distributed workflows for modeling experimental data. HPEC 2017: 1-5
[c26]
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Rafael Ferreira da Silva, Scott Callaghan, Ewa Deelman:
On the use of burst buffers for accelerating data-intensive scientific workflows. WORKS@SC 2017: 2:1-2:9
[i2]
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  - journals/corr/abs-1711-09713
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Tristan Glatard, Gregory Kiar, Tristan Aumentado-Armstrong, Natacha Beck, Pierre Bellec, Rémi Bernard, Axel Bonnet, Sorina Camarasu-Pop, Frédéric Cervenansky, Samir Das, Rafael Ferreira da Silva, Guillaume Flandin, Pascal Girard, Krzysztof J. Gorgolewski, Charles R. G. Guttmann, Valérie Hayot-Sasson, Pierre-Olivier Quirion, Pierre Rioux, Marc-Etienne Rousseau, Alan C. Evans:
Boutiques: a flexible framework for automated application integration in computing platforms. CoRR abs/1711.09713 (2017)
2016
[j10]
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Ewa Deelman, Karan Vahi, Mats Rynge, Gideon Juve, Rajiv Mayani, Rafael Ferreira da Silva:
Pegasus in the Cloud: Science Automation through Workflow Technologies. IEEE Internet Computing 20(1): 70-76 (2016)
[j9]
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Weiwei Chen, Rafael Ferreira da Silva, Ewa Deelman, Thomas Fahringer:
Dynamic and Fault-Tolerant Clustering for Scientific Workflows. IEEE Trans. Cloud Computing 4(1): 49-62 (2016)
[c25]
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Rafael Ferreira da Silva, Ewa Deelman, Rosa Filgueira, Karan Vahi, Mats Rynge, Rajiv Mayani, Benjamin Mayer:
Automating environmental computing applications with scientific workflows. eScience 2016: 400-406
[c24]
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  - conf/etfa/0002KSJVRD16
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Dariusz Król, Jacek Kitowski, Rafael Ferreira da Silva, Gideon Juve, Karan Vahi, Mats Rynge, Ewa Deelman:
Science automation in practice: Performance data farming in workflows. ETFA 2016: 1-4
[c23]
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Dariusz Król, Rafael Ferreira da Silva, Ewa Deelman, Vickie E. Lynch:
Workflow Performance Profiles: Development and Analysis. Euro-Par Workshops 2016: 108-120
[c22]
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  - conf/hpdc/SchlagkampSADS16
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Stephan Schlagkamp, Rafael Ferreira da Silva, William E. Allcock, Ewa Deelman, Uwe Schwiegelshohn:
Consecutive Job Submission Behavior at Mira Supercomputer. HPDC 2016: 93-96
[c21]
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Stephan Schlagkamp, Rafael Ferreira da Silva, Ewa Deelman, Uwe Schwiegelshohn:
Understanding User Behavior: From HPC to HTC. ICCS 2016: 2241-2245
[c20]
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  - conf/ieeehpcs/SchlagkampHES16
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Stephan Schlagkamp, Matthias Hofmann, Lars Eufinger, Rafael Ferreira da Silva:
Increasing waiting time satisfaction in parallel job scheduling via a flexible MILP approach. HPCS 2016: 164-171
[c19]
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Stephan Schlagkamp, Rafael Ferreira da Silva, Johanna Renker, Gerhard Rinkenauer:
Analyzing users in parallel computing: A user-oriented study. HPCS 2016: 395-402
[c18]
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  - conf/ipps/NawazJSD16
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Hassan Nawaz, Gideon Juve, Rafael Ferreira da Silva, Ewa Deelman:
Performance Analysis of an I/O-Intensive Workflow Executing on Google Cloud and Amazon Web Services. IPDPS Workshops 2016: 535-544
[c17]
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Anirban Mandal, Paul Ruth, Ilya Baldin, Dariusz Król, Gideon Juve, Rajiv Mayani, Rafael Ferreira da Silva, Ewa Deelman, Jeremy S. Meredith, Jeffrey S. Vetter, Vickie E. Lynch, Benjamin Mayer, James Wynne, Mark P. Blanco, Christopher D. Carothers, Justin M. LaPre, Brian Tierney:
Toward an End-to-End Framework for Modeling, Monitoring and Anomaly Detection for Scientific Workflows. IPDPS Workshops 2016: 1370-1379
[c16]
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  - conf/sc/FilgueiraSKDA16
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Rosa Filgueira, Rafael Ferreira da Silva, Amrey Krause, Ewa Deelman, Malcolm P. Atkinson:
Asterism: Pegasus and Dispel4py Hybrid Workflows for Data-Intensive Science. DataCloud@SC 2016: 1-8
[c15]
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  - conf/sc/SilvaFDPOA16
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Rafael Ferreira da Silva, Rosa Filgueira, Ewa Deelman, Erola Pairo-Castineira, Ian Michael Overton, Malcolm P. Atkinson:
Using Simple PID Controllers to Prevent and Mitigate Faults in Scientific Workflows. WORKS@SC 2016: 15-24
2015
[j8]
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  - journals/fgcs/DeelmanVJRCMMCS15
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Ewa Deelman, Karan Vahi, Gideon Juve, Mats Rynge, Scott Callaghan, Philip Maechling, Rajiv Mayani, Weiwei Chen, Rafael Ferreira da Silva, Miron Livny, R. Kent Wenger:
Pegasus, a workflow management system for science automation. Future Generation Comp. Syst. 46: 17-35 (2015)
[j7]
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Weiwei Chen, Rafael Ferreira da Silva, Ewa Deelman, Rizos Sakellariou:
Using imbalance metrics to optimize task clustering in scientific workflow executions. Future Generation Comp. Syst. 46: 69-84 (2015)
[j6]
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  - journals/fini/GlatardLSABLRRS15
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Tristan Glatard, Lindsay B. Lewis, Rafael Ferreira da Silva, Reza Adalat, Natacha Beck, Claude Lepage, Pierre Rioux, Marc-Etienne Rousseau, Tarek Sherif, Ewa Deelman, Najmeh Khalili-Mahani, Alan C. Evans:
Reproducibility of neuroimaging analyses across operating systems. Front. Neuroinform. 2015 (2015)
[j5]
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Rafael Ferreira da Silva, Gideon Juve, Mats Rynge, Ewa Deelman, Miron Livny:
Online Task Resource Consumption Prediction for Scientific Workflows. Parallel Processing Letters 25(3) (2015)
[c14]
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  - conf/cluster/JuveTSKTDAL15
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Gideon Juve, Benjamín Tovar, Rafael Ferreira da Silva, Dariusz Król, Douglas Thain, Ewa Deelman, William E. Allcock, Miron Livny:
Practical Resource Monitoring for Robust High Throughput Computing. CLUSTER 2015: 650-657
[c13]
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  - conf/iccS/SilvaRJSDLWL15
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Rafael Ferreira da Silva, Mats Rynge, Gideon Juve, Igor Sfiligoi, Ewa Deelman, James Letts, Frank Würthwein, Miron Livny:
Characterizing a High Throughput Computing Workload: The Compact Muon Solenoid (CMS) Experiment at LHC. ICCS 2015: 39-48
2014
[j4]
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  - journals/concurrency/SilvaGD14
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Rafael Ferreira da Silva, Tristan Glatard, Frédéric Desprez:
Controlling fairness and task granularity in distributed, online, non-clairvoyant workflow executions. Concurrency and Computation: Practice and Experience 26(14): 2347-2366 (2014)
[c12]
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  - conf/eScience/SilvaCJVD14
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Rafael Ferreira da Silva, Weiwei Chen, Gideon Juve, Karan Vahi, Ewa Deelman:
Community Resources for Enabling Research in Distributed Scientific Workflows. eScience 2014: 177-184
[c11]
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  - conf/europar/PerezSRDPC14
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Idafen Santana-Pérez, Rafael Ferreira da Silva, Mats Rynge, Ewa Deelman, María S. Pérez-Hernández, Óscar Corcho:
A Semantic-Based Approach to Attain Reproducibility of Computational Environments in Scientific Workflows: A Case Study. Euro-Par Workshops (1) 2014: 452-463
[c10]
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  - conf/sc/SrinivasanJSVD14
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Sudarshan Srinivasan, Gideon Juve, Rafael Ferreira da Silva, Karan Vahi, Ewa Deelman:
A cleanup algorithm for implementing storage constraints in scientific workflow executions. WORKS@SC 2014: 41-49
[i1]
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  - journals/corr/JamesWS14
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Doug James, Nancy Wilkins-Diehr, Victoria Stodden, Dirk Colbry, Carlos Rosales, Mark R. Fahey, Justin Shi, Rafael Ferreira da Silva, Kyo Lee, Ralph Roskies, Laurence Loewe, Susan Lindsey, Rob Kooper, Lorena A. Barba, David H. Bailey, Jonathan M. Borwein, Óscar Corcho, Ewa Deelman, Michael C. Dietze, Benjamin Gilbert, Jan Harkes, Seth Keele, Praveen Kumar, Jong Lee, Erika Linke, Richard Marciano, Luigi Marini, Chris Mattmann, Dave Mattson, Kenton McHenry, Robert T. McLay, Sheila Miguez, Barbara S. Minsker, María S. Pérez-Hernández, Dan Ryan, Mats Rynge, Idafen Santana-Pérez, Mahadev Satyanarayanan, Gloriana St. Clair, Keith Webster, Eivind Hovig, Daniel S. Katz, Sophie Kay, Geir Kjetil Sandve, David Skinner, Gabrielle Allen, John Cazes, Kym Won Cho, Jim Fonseca, Lorraine Hwang, Lars Koesterke, Pragnesh Patel, Line Pouchard, Edward Seidel, Isuru Suriarachchi:
Standing Together for Reproducibility in Large-Scale Computing: Report on reproducibility@XSEDE. CoRR abs/1412.5557 (2014)
2013
[b1]
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  - phd/hal/DaSilva13
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Rafael Ferreira da Silva:
A science-gateway for workflow executions : Online and non-clairvoyant self-healing of workflow executions on grids. (Auto-guérison en ligne et non clairvoyante des exécutions de chaînes de traitement sur grilles de calcul : Méthodes et évaluation dans une science-gateway pour l'imagerie médicale). Institut national des sciences appliquées de Lyon, Lyon - Villeurbanne, France 2013
[j3]
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  - journals/fgcs/Camarasu-PopGSGSB13
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Sorina Camarasu-Pop, Tristan Glatard, Rafael Ferreira da Silva, Pierre Gueth, David Sarrut, Hugues Benoit-Cattin:
Monte Carlo simulation on heterogeneous distributed systems: A computing framework with parallel merging and checkpointing strategies. Future Generation Comp. Syst. 29(3): 728-738 (2013)
[j2]
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  - journals/fgcs/SilvaGD13
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Rafael Ferreira da Silva, Tristan Glatard, Frédéric Desprez:
Self-healing of workflow activity incidents on distributed computing infrastructures. Future Generation Comp. Syst. 29(8): 2284-2294 (2013)
[j1]
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Tristan Glatard, Carole Lartizien, Bernard Gibaud, Rafael Ferreira da Silva, Germain Forestier, Frederic Cervenansky, Martino Alessandrini, Hugues Benoit-Cattin, Olivier Bernard, Sorina Camarasu-Pop, Nadia Cerezo, Patrick Clarysse, Alban Gaignard, Patrick Hugonnard, Hervé Liebgott, Simon Marache, Adrien Marion, Johan Montagnat, Joachim Tabary, Denis Friboulet:
A Virtual Imaging Platform for Multi-Modality Medical Image Simulation. IEEE Trans. Med. Imaging 32(1): 110-118 (2013)
[c9]
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  - conf/cloudcom/AzarnooshRJDNMS13
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Sepideh Azarnoosh, Mats Rynge, Gideon Juve, Ewa Deelman, Michal Niec, Maciej Malawski, Rafael Ferreira da Silva:
Introducing PRECIP: An API for Managing Repeatable Experiments in the Cloud. CloudCom (2) 2013: 19-26
[c8]
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  - conf/eScience/ChenSDS13
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Weiwei Chen, Rafael Ferreira da Silva, Ewa Deelman, Rizos Sakellariou:
Balanced Task Clustering in Scientific Workflows. e-Science 2013: 188-195
[c7]
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  - conf/europar/SilvaGD13
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Rafael Ferreira da Silva, Tristan Glatard, Frédéric Desprez:
Workflow Fairness Control on Online and Non-clairvoyant Distributed Computing Platforms. Euro-Par 2013: 102-113
[c6]
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  - conf/europar/SilvaGD13a
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Rafael Ferreira da Silva, Tristan Glatard, Frédéric Desprez:
On-Line, Non-clairvoyant Optimization of Workflow Activity Granularity on Grids. Euro-Par 2013: 255-266
[c5]
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  - conf/sc/SilvaJDGDTTL09
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Rafael Ferreira da Silva, Gideon Juve, Ewa Deelman, Tristan Glatard, Frédéric Desprez, Douglas Thain, Benjamín Tovar, Miron Livny:
Toward fine-grained online task characteristics estimation in scientific workflows. WORKS@SC 2013: 58-67
2012
[c4]
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  - conf/ccgrid/SilvaGD12
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Rafael Ferreira da Silva, Tristan Glatard, Frédéric Desprez:
Self-Healing of Operational Workflow Incidents on Distributed Computing Infrastructures. CCGRID 2012: 318-325
[c3]
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Rafael Ferreira da Silva, Tristan Glatard:
A Science-Gateway Workload Archive to Study Pilot Jobs, User Activity, Bag of Tasks, Task Sub-steps, and Workflow Executions. Euro-Par Workshops 2012: 79-88
[c2]
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  - conf/isbi/GlatardMBCCSFGLLMF12
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Tristan Glatard, Adrien Marion, Hugues Benoit-Cattin, Sorina Camarasu-Pop, Patrick Clarysse, Rafael Ferreira da Silva, Germain Forestier, Bernard Gibaud, Carole Lartizien, Hervé Liebgott, Kevin Moulin, Denis Friboulet:
Multi-modality image simulation with the Virtual Imaging Platform: Illustration on cardiac echography and MRI. ISBI 2012: 98-101
2011
[c1]
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  - conf/cbms/MarionFBCCSGGHLLSTVF11
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Adrien Marion, Germain Forestier, Hugues Benoit-Cattin, Sorina Camarasu-Pop, Patrick Clarysse, Rafael Ferreira da Silva, Bernard Gibaud, Tristan Glatard, Patrick Hugonnard, Carole Lartizien, Hervé Liebgott, Svenja Specovius, Joachim Tabary, Sébastien Valette, Denis Friboulet:
Multi-modality medical image simulation of biological models with the Virtual Imaging Platform (VIP). CBMS 2011: 1-6

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