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2020 – today
- 2020
[j8]Vicente Acuña, Roberto Grossi, Giuseppe Francesco Italiano, Leandro Lima, Romeo Rizzi, Gustavo Sacomoto, Marie-France Sagot, Blerina Sinaimeri
:
On Bubble Generators in Directed Graphs. Algorithmica 82(4): 898-914 (2020)
2010 – 2019
- 2018
- [j7]Katerina Böhmová, Luca Häfliger, Matús Mihalák, Tobias Pröger, Gustavo Sacomoto, Marie-France Sagot:
Computing and Listing st-Paths in Public Transportation Networks. Theory Comput. Syst. 62(3): 600-621 (2018) - 2017
- [j6]Leandro Lima, Blerina Sinaimeri, Gustavo Sacomoto, Hélène Lopez-Maestre, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix:
Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads. Algorithms Mol. Biol. 12(1): 2:1-2:19 (2017) - [c11]Vicente Acuña, Roberto Grossi, Giuseppe F. Italiano, Leandro Lima, Romeo Rizzi, Gustavo Sacomoto, Marie-France Sagot, Blerina Sinaimeri:
On Bubble Generators in Directed Graphs. WG 2017: 18-31 - 2016
- [c10]Bastien Cazaux, Gustavo Sacomoto, Eric Rivals:
Superstring Graph: A New Approach for Genome Assembly. AAIM 2016: 39-52 - [c9]Katerina Böhmová, Matús Mihalák, Tobias Pröger, Gustavo Sacomoto, Marie-France Sagot:
Computing and Listing st-Paths in Public Transportation Networks. CSR 2016: 102-116 - 2015
- [j5]Gustavo Sacomoto, Vincent Lacroix, Marie-France Sagot:
A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs. Algorithms Mol. Biol. 10: 20 (2015) - [j4]Laurent Bulteau, Gustavo Sacomoto, Blerina Sinaimeri:
Computing an Evolutionary Ordering is Hard. Electron. Notes Discret. Math. 50: 255-260 (2015) - 2014
- [j3]Kamil Salikhov, Gustavo Sacomoto, Gregory Kucherov:
Using cascading Bloom filters to improve the memory usage for de Brujin graphs. Algorithms Mol. Biol. 9: 2 (2014) - [c8]Rui A. Ferreira, Roberto Grossi, Romeo Rizzi, Gustavo Sacomoto, Marie-France Sagot:
Amortized Õ(|V|) -Delay Algorithm for Listing Chordless Cycles in Undirected Graphs. ESA 2014: 418-429 - [c7]Romeo Rizzi, Gustavo Sacomoto, Marie-France Sagot:
Efficiently Listing Bounded Length st-Paths. IWOCA 2014: 318-329 - [c6]Gustavo Sacomoto, Blerina Sinaimeri, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix:
Navigating in a Sea of Repeats in RNA-seq without Drowning. WABI 2014: 82-96 - [i7]Gustavo Sacomoto, Blerina Sinaimeri, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix:
Navigating in a sea of repeats in RNA-seq without drowning. CoRR abs/1406.1022 (2014) - [i6]Gustavo Sacomoto:
Efficient Algorithms for de novo Assembly of Alternative Splicing Events from RNA-seq Data. CoRR abs/1406.6047 (2014) - [i5]Rui A. Ferreira, Roberto Grossi, Romeo Rizzi, Gustavo Sacomoto, Marie-France Sagot:
Amortized Õ(|V|)-Delay Algorithm for Listing Chordless Cycles in Undirected Graphs. CoRR abs/1408.1265 (2014) - [i4]Laurent Bulteau, Gustavo Sacomoto, Blerina Sinaimeri:
Computing an Evolutionary Ordering is Hard. CoRR abs/1410.6663 (2014) - [i3]Romeo Rizzi, Gustavo Sacomoto, Marie-France Sagot:
Efficiently listing bounded length st-paths. CoRR abs/1411.6852 (2014) - 2013
- [c5]Etienne Birmelé, Rui A. Ferreira, Roberto Grossi, Andrea Marino, Nadia Pisanti, Romeo Rizzi, Gustavo Sacomoto:
Optimal Listing of Cycles and st-Paths in Undirected Graphs. SODA 2013: 1884-1896 - [c4]Gustavo Sacomoto, Vincent Lacroix, Marie-France Sagot:
A Polynomial Delay Algorithm for the Enumeration of Bubbles with Length Constraints in Directed Graphs and Its Application to the Detection of Alternative Splicing in RNA-seq Data. WABI 2013: 99-111 - [c3]Kamil Salikhov, Gustavo Sacomoto, Gregory Kucherov:
Using Cascading Bloom Filters to Improve the Memory Usage for de Brujin Graphs. WABI 2013: 364-376 - [i2]Gustavo Sacomoto, Vincent Lacroix, Marie-France Sagot:
A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs and its application to the detection of alternative splicing in RNA-seq data. CoRR abs/1307.7813 (2013) - 2012
- [j2]Gustavo Akio Tominaga Sacomoto, Janice Kielbassa, Rayan Chikhi, Raluca Uricaru, Pavlos Antoniou, Marie-France Sagot, Pierre Peterlongo, Vincent Lacroix:
KISSPLICE: de-novo calling alternative splicing events from RNA-seq data. BMC Bioinform. 13(S-6): S5 (2012) - [c2]Etienne Birmelé, Pierluigi Crescenzi, Rui A. Ferreira, Roberto Grossi, Vincent Lacroix, Andrea Marino, Nadia Pisanti, Gustavo Akio Tominaga Sacomoto, Marie-France Sagot:
Efficient Bubble Enumeration in Directed Graphs. SPIRE 2012: 118-129 - [i1]Etienne Birmelé, Rui A. Ferreira, Roberto Grossi, Andrea Marino, Nadia Pisanti, Romeo Rizzi, Gustavo Akio Tominaga Sacomoto, Marie-France Sagot:
Optimal Listing of Cycles and st-Paths in Undirected Graphs. CoRR abs/1205.2766 (2012) - 2011
- [c1]Gustavo Akio Tominaga Sacomoto, Alair Pereira do Lago:
A New Algorithm for Sparse Suffix Trees. BSB 2011: 34-41
2000 – 2009
- 2009
- [j1]Pierre Peterlongo, Gustavo Akio Tominaga Sacomoto, Alair Pereira do Lago, Nadia Pisanti, Marie-France Sagot:
Lossless filter for multiple repeats with bounded edit distance. Algorithms Mol. Biol. 4 (2009)
Coauthor Index
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