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Gustavo Sacomoto

Gustavo Akio Tominaga Sacomoto

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2010 – today

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2018
[j7]
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  - journals/mst/BohmovaHMPSS18
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Katerina Böhmová, Luca Häfliger, Matús Mihalák, Tobias Pröger, Gustavo Sacomoto, Marie-France Sagot:
Computing and Listing st-Paths in Public Transportation Networks. Theory Comput. Syst. 62(3): 600-621 (2018)
2017
[j6]
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Leandro Lima, Blerina Sinaimeri, Gustavo Sacomoto, Hélène Lopez-Maestre, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix:
Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads. Algorithms for Molecular Biology 12(1): 2:1-2:19 (2017)
[c11]
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  - conf/wg/AcunaGILRSSS17
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Vicente Acuña, Roberto Grossi, Giuseppe F. Italiano, Leandro Lima, Romeo Rizzi, Gustavo Sacomoto, Marie-France Sagot, Blerina Sinaimeri:
On Bubble Generators in Directed Graphs. WG 2017: 18-31
2016
[c10]
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  - conf/aaim/CazauxSR16
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Bastien Cazaux, Gustavo Sacomoto, Eric Rivals:
Superstring Graph: A New Approach for Genome Assembly. AAIM 2016: 39-52
[c9]
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  - conf/csr/BohmovaMPSS16
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Katerina Böhmová, Matús Mihalák, Tobias Pröger, Gustavo Sacomoto, Marie-France Sagot:
Computing and Listing st-Paths in Public Transportation Networks. CSR 2016: 102-116
2015
[j5]
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  - journals/almob/SacomotoLS15
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Gustavo Sacomoto, Vincent Lacroix, Marie-France Sagot:
A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs. Algorithms for Molecular Biology 10: 20 (2015)
[j4]
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  - journals/endm/BulteauSS15
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Laurent Bulteau, Gustavo Sacomoto, Blerina Sinaimeri:
Computing an Evolutionary Ordering is Hard. Electronic Notes in Discrete Mathematics 50: 255-260 (2015)
2014
[j3]
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  - journals/almob/SalikhovSK14
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Kamil Salikhov, Gustavo Sacomoto, Gregory Kucherov:
Using cascading Bloom filters to improve the memory usage for de Brujin graphs. Algorithms for Molecular Biology 9: 2 (2014)
[c8]
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  - conf/esa/FerreiraGRSS14
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Rui A. Ferreira, Roberto Grossi, Romeo Rizzi, Gustavo Sacomoto, Marie-France Sagot:
Amortized Õ(|V|) -Delay Algorithm for Listing Chordless Cycles in Undirected Graphs. ESA 2014: 418-429
[c7]
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  - conf/iwoca/RizziSS14
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Romeo Rizzi, Gustavo Sacomoto, Marie-France Sagot:
Efficiently Listing Bounded Length st-Paths. IWOCA 2014: 318-329
[c6]
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  - conf/wabi/SacomotoSMMSL14
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Gustavo Sacomoto, Blerina Sinaimeri, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix:
Navigating in a Sea of Repeats in RNA-seq without Drowning. WABI 2014: 82-96
[i7]
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Gustavo Sacomoto, Blerina Sinaimeri, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix:
Navigating in a sea of repeats in RNA-seq without drowning. CoRR abs/1406.1022 (2014)
[i6]
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  - journals/corr/Sacomoto14
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Gustavo Sacomoto:
Efficient Algorithms for de novo Assembly of Alternative Splicing Events from RNA-seq Data. CoRR abs/1406.6047 (2014)
[i5]
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Rui A. Ferreira, Roberto Grossi, Romeo Rizzi, Gustavo Sacomoto, Marie-France Sagot:
Amortized Õ(|V|)-Delay Algorithm for Listing Chordless Cycles in Undirected Graphs. CoRR abs/1408.1265 (2014)
[i4]
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Laurent Bulteau, Gustavo Sacomoto, Blerina Sinaimeri:
Computing an Evolutionary Ordering is Hard. CoRR abs/1410.6663 (2014)
[i3]
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Romeo Rizzi, Gustavo Sacomoto, Marie-France Sagot:
Efficiently listing bounded length st-paths. CoRR abs/1411.6852 (2014)
2013
[c5]
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  - conf/soda/BirmeleFGMPRS13
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Etienne Birmelé, Rui A. Ferreira, Roberto Grossi, Andrea Marino, Nadia Pisanti, Romeo Rizzi, Gustavo Sacomoto:
Optimal Listing of Cycles and st-Paths in Undirected Graphs. SODA 2013: 1884-1896
[c4]
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  - conf/wabi/SacomotoLS13
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Gustavo Sacomoto, Vincent Lacroix, Marie-France Sagot:
A Polynomial Delay Algorithm for the Enumeration of Bubbles with Length Constraints in Directed Graphs and Its Application to the Detection of Alternative Splicing in RNA-seq Data. WABI 2013: 99-111
[c3]
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Kamil Salikhov, Gustavo Sacomoto, Gregory Kucherov:
Using Cascading Bloom Filters to Improve the Memory Usage for de Brujin Graphs. WABI 2013: 364-376
[i2]
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Gustavo Sacomoto, Vincent Lacroix, Marie-France Sagot:
A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs and its application to the detection of alternative splicing in RNA-seq data. CoRR abs/1307.7813 (2013)
2012
[j2]
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  - journals/bmcbi/SacomotoKCUASPL12
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Gustavo Akio Tominaga Sacomoto, Janice Kielbassa, Rayan Chikhi, Raluca Uricaru, Pavlos Antoniou, Marie-France Sagot, Pierre Peterlongo, Vincent Lacroix:
KISSPLICE: de-novo calling alternative splicing events from RNA-seq data. BMC Bioinformatics 13(S-6): S5 (2012)
[c2]
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  - conf/spire/BirmeleCFGLMPSS12
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Etienne Birmelé, Pierluigi Crescenzi, Rui A. Ferreira, Roberto Grossi, Vincent Lacroix, Andrea Marino, Nadia Pisanti, Gustavo Akio Tominaga Sacomoto, Marie-France Sagot:
Efficient Bubble Enumeration in Directed Graphs. SPIRE 2012: 118-129
[i1]
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  - journals/corr/abs-1205-2766
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Etienne Birmelé, Rui A. Ferreira, Roberto Grossi, Andrea Marino, Nadia Pisanti, Romeo Rizzi, Gustavo Akio Tominaga Sacomoto, Marie-France Sagot:
Optimal Listing of Cycles and st-Paths in Undirected Graphs. CoRR abs/1205.2766 (2012)
2011
[c1]
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  - conf/wob/SacomotoL11
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Gustavo Akio Tominaga Sacomoto, Alair Pereira do Lago:
A New Algorithm for Sparse Suffix Trees. BSB 2011: 34-41

2000 – 2009

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2009
[j1]
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  - journals/almob/PeterlongoSLPS09
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Pierre Peterlongo, Gustavo Akio Tominaga Sacomoto, Alair Pereira do Lago, Nadia Pisanti, Marie-France Sagot:
Lossless filter for multiple repeats with bounded edit distance. Algorithms for Molecular Biology 4 (2009)

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