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Semantic ScholarSara C. Madeira
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- affiliation: University of Lisbon, Instituto Superior Técnico, Portugal
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2010 – today
- 2019
[j27]Rui Henriques
, Sara C. Madeira:
Triclustering Algorithms for Three-Dimensional Data Analysis: A Comprehensive Survey. ACM Comput. Surv. 51(5): 95:1-95:43 (2019)- [c25]João M. C. Sousa, Susana M. Vieira, João P. Carvalho, Sara C. Madeira, Leo A. Celi, Stan N. Finkelstein:
An Architecture Based on Fuzzy Systems for Personalized Medicine in ICUs. FUZZ-IEEE 2019: 1-6 - [i2]Telma Pereira, Sofia Pires, Marta Gromicho, Susana Pinto, Mamede de Carvalho, Sara C. Madeira:
Predicting assisted ventilation in Amyotrophic Lateral Sclerosis using a mixture of experts and conformal predictors. CoRR abs/1907.13070 (2019) - 2018
- [j26]Rui Henriques, Sara C. Madeira:
BSig: evaluating the statistical significance of biclustering solutions. Data Min. Knowl. Discov. 32(1): 124-161 (2018) - [j25]Telma Pereira, Francisco L. Ferreira, Sandra Cardoso, Dina Silva, Alexandre de Mendonça, Manuela Guerreiro, Sara C. Madeira:
Neuropsychological predictors of conversion from mild cognitive impairment to Alzheimer's disease: a feature selection ensemble combining stability and predictability. BMC Med. Inf. & Decision Making 18(1): 137:1-137:20 (2018) - [c24]Sofia Pires, Marta Gromicho, Susana Pinto, Mamede de Carvalho, Sara C. Madeira:
Predicting Non-invasive Ventilation in ALS Patients Using Stratified Disease Progression Groups. ICDM Workshops 2018: 748-757 - [i1]Telma Pereira, Sandra Cardoso, Dina Silva, Manuela Guerreiro, Alexandre de Mendonça, Sara C. Madeira:
Ensemble learning with Conformal Predictors: Targeting credible predictions of conversion from Mild Cognitive Impairment to Alzheimer's Disease. CoRR abs/1807.01619 (2018) - 2017
- [j24]Rui Henriques, Francisco L. Ferreira, Sara C. Madeira:
BicPAMS: software for biological data analysis with pattern-based biclustering. BMC Bioinformatics 18(1): 82:1-82:16 (2017) - [j23]Rui Henriques, Francisco L. Ferreira, Sara C. Madeira:
Erratum to: BicPAMS: software for biological data analysis with pattern-based biclustering. BMC Bioinformatics 18(1): 162:1-162:2 (2017) - [j22]Telma Pereira, Luís Lemos, Sandra Cardoso, Dina Silva, Ana Rodrigues, Isabel Santana, Alexandre de Mendonça, Manuela Guerreiro, Sara C. Madeira:
Predicting progression of mild cognitive impairment to dementia using neuropsychological data: a supervised learning approach using time windows. BMC Med. Inf. & Decision Making 17(1): 110:1-110:15 (2017) - [c23]Telma Pereira, Alexandre de Mendonça, Francisco L. Ferreira, Sara C. Madeira, Manuela Guerreiro:
Towards a reliable prediction of conversion from Mild Cognitive Impairment to Alzheimer's Disease: stepwise learning using time windows. MIH@KDD 2017: 19-26 - [c22]Telma Pereira, Sandra Cardoso, Dina Silva, Alexandre de Mendonça, Manuela Guerreiro, Sara C. Madeira:
Towards Trustworthy Predictions of Conversion from Mild Cognitive Impairment to Dementia: A Conformal Prediction Approach. PACBB 2017: 155-163 - [c21]Francisco L. Ferreira, Sandra Cardoso, Dina Silva, Manuela Guerreiro, Alexandre de Mendonça, Sara C. Madeira:
Improving Prognostic Prediction from Mild Cognitive Impairment to Alzheimer's Disease Using Genetic Algorithms. PACBB 2017: 180-188 - 2016
- [j21]Rui Henriques, Sara C. Madeira:
BicNET: Flexible module discovery in large-scale biological networks using biclustering. Algorithms for Molecular Biology 11: 14 (2016) - [j20]Rui Henriques, Sara C. Madeira:
BiC2PAM: constraint-guided biclustering for biological data analysis with domain knowledge. Algorithms for Molecular Biology 11: 23 (2016) - 2015
- [j19]Rui Henriques, Sara C. Madeira, Cláudia Antunes:
Multi-period classification: learning sequent classes from temporal domains. Data Min. Knowl. Discov. 29(3): 792-819 (2015) - [j18]Rui Henriques, Cláudia Antunes, Sara C. Madeira:
Generative modeling of repositories of health records for predictive tasks. Data Min. Knowl. Discov. 29(4): 999-1032 (2015) - [j17]André Valério Carreiro, Pedro M. T. Amaral, Susana Pinto, Pedro Tomás, Mamede de Carvalho, Sara C. Madeira:
Prognostic models based on patient snapshots and time windows: Predicting disease progression to assisted ventilation in Amyotrophic Lateral Sclerosis. Journal of Biomedical Informatics 58: 133-144 (2015) - [j16]Rui Henriques, Cláudia Antunes, Sara C. Madeira:
A structured view on pattern mining-based biclustering. Pattern Recognition 48(12): 3941-3958 (2015) - [j15]Rui Henriques, Sara C. Madeira:
Biclustering with Flexible Plaid Models to Unravel Interactions between Biological Processes. IEEE/ACM Trans. Comput. Biology Bioinform. 12(4): 738-752 (2015) - [c20]Rui Henriques, Sara C. Madeira:
Pattern-Based Biclustering with Constraints for Gene Expression Data Analysis. EPIA 2015: 326-339 - [c19]Rui Henriques, Sara C. Madeira:
BicNET: Efficient Biclustering of Biological Networks to Unravel Non-Trivial Modules. WABI 2015: 1-15 - 2014
- [j14]Rui Henriques, Sara C. Madeira:
BicPAM: Pattern-based biclustering for biomedical data analysis. Algorithms for Molecular Biology 9: 27 (2014) - [j13]Rui Henriques, Sara C. Madeira:
BicSPAM: flexible biclustering using sequential patterns. BMC Bioinformatics 15: 130 (2014) - [j12]Miguel Cacho Teixeira, Pedro Tiago Monteiro, Joana Fernandes Guerreiro, Joana Pinho Gonçalves, Nuno Pereira Mira, Sandra Costa dos Santos, Tânia Rodrigues Cabrito, Margarida Palma, Catarina Costa, Alexandre Paulo Francisco, Sara Cordeiro Madeira, Arlindo Limede Oliveira, Ana Teresa Freitas, Isabel Sá-Correia:
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae. Nucleic Acids Research 42(Database-Issue): 161-166 (2014) - [j11]Joana P. Gonçalves, Sara C. Madeira:
LateBiclustering: Efficient Heuristic Algorithm for Time-Lagged Bicluster Identification. IEEE/ACM Trans. Comput. Biology Bioinform. 11(5): 801-813 (2014) - [c18]André Vale, Sara C. Madeira, Cláudia Antunes:
Mining coherent evolution patterns in education through biclustering. EDM 2014: 391-392 - 2013
- [c17]Cecília Nunes, Dina Silva, Manuela Guerreiro, Alexandre de Mendonça, Alexandra M. Carvalho, Sara C. Madeira:
Class Imbalance in the Prediction of Dementia from Neuropsychological Data. EPIA 2013: 138-151 - [c16]Joana P. Gonçalves, Sara C. Madeira:
Heuristic approaches for time-lagged biclustering. BIOKDD 2013: 1-9 - [c15]Hugo López-Fernández, Miguel Reboiro-Jato, Sara C. Madeira, Rubén López-Cortés, J. D. Nunes-Miranda, Hugo Miguel Santos, Florentino Fdez-Riverola, Daniel Glez-Peña:
A Workflow for the Application of Biclustering to Mass Spectrometry Data. PACBB 2013: 145-153 - [c14]Rui Henriques, Cláudia Antunes, Sara C. Madeira:
Methods for the Efficient Discovery of Large Item-Indexable Sequential Patterns. NFMCP 2013: 100-116 - 2012
- [j10]Joana P. Gonçalves, Yves Moreau, Sara C. Madeira:
AliBiMotif: Integrating alignment and biclustering to unravel transcription factor binding sites in DNA sequences. IJDMB 6(2): 196-215 (2012) - [j9]André Valério Carreiro, Artur J. Ferreira, Mário A. T. Figueiredo, Sara Cordeiro Madeira:
Towards a Classification Approach using Meta-Biclustering: Impact of Discretization in the Analysis of Expression Time Series. J. Integrative Bioinformatics 9(3) (2012) - [c13]André Valério Carreiro, Artur J. Ferreira, Mário A. T. Figueiredo, Sara C. Madeira:
Prognostic Prediction Using Clinical Expression Time Series: Towards a Supervised Learning Approach Based on Meta-biclusters. PACBB 2012: 11-20 - [c12]Filipe Cristóvão, Sara C. Madeira:
Parallel e-CCC-Biclustering: Mining Approximate Temporal Patterns in Gene Expression Time Series Using Parallel Biclustering. PACBB 2012: 21-31 - 2011
- [j8]Joana P. Gonçalves, Alexandre P. Francisco, Nuno P. Mira, Miguel C. Teixeira, Isabel Sá-Correia, Arlindo L. Oliveira, Sara C. Madeira:
TFRank: network-based prioritization of regulatory associations underlying transcriptional responses. Bioinformatics 27(22): 3149-3157 (2011) - [j7]André Valério Carreiro, Orlando Anunciação, João André Carriço, Sara Cordeiro Madeira:
Prognostic Prediction through Biclustering-Based Classification of Clinical Gene Expression Time Series. J. Integrative Bioinformatics 8(3) (2011) - [j6]Dário Abdulrehman, Pedro T. Monteiro, Miguel C. Teixeira, Nuno P. Mira, Artur B. Lourenço, Sandra Costa dos Santos, Tânia Rodrigues Cabrito, Alexandre P. Francisco, Sara C. Madeira, Ricardo Santos Aires, Arlindo L. Oliveira, Isabel Sá-Correia, Ana T. Freitas:
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface. Nucleic Acids Research 39(Database-Issue): 136-140 (2011) - [j5]Daniela Nitsch, Léon-Charles Tranchevent, Joana P. Gonçalves, Josef Korbinian Vogt, Sara C. Madeira, Yves Moreau:
PINTA: a web server for network-based gene prioritization from expression data. Nucleic Acids Research 39(Web-Server-Issue): 334-338 (2011) - [c11]Ricardo Santos Aires, João A. Carriço, Alexandre P. Francisco, Sara C. Madeira:
Baiacu: A Tool for the Visual Analysis of the Saccharomyces Cerevisiae Regulatory Network. PACBB 2011: 49-56 - [c10]André Valério Carreiro, Orlando Anunciação, João A. Carriço, Sara C. Madeira:
Biclustering-Based Classification of Clinical Expression Time Series: A Case Study in Patients with Multiple Sclerosis. PACBB 2011: 229-239 - 2010
- [j4]Ignacio Medina, José Carbonell, Luis Pulido, Sara C. Madeira, Stefan Götz, Ana Conesa, Joaquín Tárraga, Alberto D. Pascual-Montano, Rubén Nogales-Cadenas, Javier Santoyo, Francisco García-García, Martina Marbà, David Montaner, Joaquín Dopazo:
Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling. Nucleic Acids Research 38(Web-Server-Issue): 210-213 (2010) - [j3]Sara C. Madeira, Miguel C. Teixeira, Isabel Sá-Correia, Arlindo L. Oliveira:
Identification of Regulatory Modules in Time Series Gene Expression Data Using a Linear Time Biclustering Algorithm. IEEE/ACM Trans. Comput. Biology Bioinform. 7(1): 153-165 (2010) - [c9]Joana P. Gonçalves, Sara C. Madeira:
e-BiMotif: Combining Sequence Alignment and Biclustering to Unravel Structured Motifs. IWPACBB 2010: 181-191 - [c8]Joana P. Gonçalves, Sara C. Madeira, Yves Moreau:
Network-Based Disease Candidate Gene Prioritization: Towards Global Diffusion in Heterogeneous Association Networks. NyNaK 2010
2000 – 2009
- 2009
- [j2]Sara C. Madeira, Arlindo L. Oliveira:
A polynomial time biclustering algorithm for finding approximate expression patterns in gene expression time series. Algorithms for Molecular Biology 4 (2009) - [c7]Sara C. Madeira, Arlindo L. Oliveira:
Efficient Biclustering Algorithms for Time Series Gene Expression Data Analysis. IWANN (2) 2009: 1013-1019 - [c6]Paulo Moura, Ricardo Rocha, Sara C. Madeira:
High Level Thread-Based Competitive Or-Parallelism in Logtalk. PADL 2009: 107-121 - 2008
- [c5]Paulo Moura, Ricardo Rocha, Sara C. Madeira:
Thread-Based Competitive Or-Parallelism. ICLP 2008: 713-717 - 2007
- [c4]Sara C. Madeira, Arlindo L. Oliveira:
An Efficient Biclustering Algorithm for Finding Genes with Similar Patterns in Time-series Expression Data. APBC 2007: 67-80 - 2005
- [c3]Sara C. Madeira, Arlindo L. Oliveira:
A Linear Time Biclustering Algorithm for Time Series Gene Expression Data. WABI 2005: 39-52 - 2004
- [j1]Sara C. Madeira, Arlindo L. Oliveira:
Biclustering Algorithms for Biological Data Analysis: A Survey. IEEE/ACM Trans. Comput. Biology Bioinform. 1(1): 24-45 (2004) - 2003
- [c2]Sara C. Madeira, Arlindo L. Oliveira, Catarina S. Conceição:
A Data Mining Approach to Credit Risk Evaluation and Behaviour Scoring. EPIA 2003: 184-188 - [c1]João M. C. Sousa, Sara C. Madeira, Uzay Kaymak:
Modeling charity donations using target selection for revenue maximization. FUZZ-IEEE 2003: 654-659
Coauthor Index
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last updated on 2019-10-20 23:49 CEST by the dblp team
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