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Sandra Gesing

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affiliation: University of Notre Dame, Indiana, USA

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2018
[j21]
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Jeffrey C. Carver, Sandra Gesing, Daniel S. Katz, Karthik Ram, Nic Weber:
Conceptualization of a US Research Software Sustainability Institute (URSSI). Computing in Science and Engineering 20(3): 4-9 (2018)
[j20]
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Sandra Gesing, Rion Dooley, Marlon E. Pierce, Jens Krüger, Richard Grunzke, Sonja Herres-Pawlis, Alexander Hoffmann:
Gathering requirements for advancing simulations in HPC infrastructures via science gateways. Future Generation Comp. Syst. 82: 544-554 (2018)
[c31]
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Peter Salhofer, Sandra Gesing, Charlie Catlett:
Introduction to the Minitrack on Turning Smart: Challenges and Experiences in Smart Application Development. HICSS 2018
[c30]
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Henry Neeman, Hussein M. Al-Azzawi, Aaron Bergstrom, Zoe K. Braiterman, Dana Brunson, Dirk Colbry, Eduardo Colmenares, Akilah N. Fuller, Sandra Gesing, Maria Kalyvaki, Claire Mizumoto, Jeho Park, Anita Z. Schwartz, Jason L. Simms, Rustomji Vania:
Progress Update on the Development and Implementation of the Advanced Cyberinfrastructure Research & Education Facilitators Virtual Residency Program. PEARC 2018: 71:1-71:7
[e5]
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Esam El-Araby, Dhabaleswar K. Panda, Sandra Gesing, Amy W. Apon, Volodymyr V. Kindratenko, Massimo Cafaro, Alfredo Cuzzocrea:
18th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing, CCGRID 2018, Washington, DC, USA, May 1-4, 2018. IEEE Computer Society 2018, ISBN 978-1-5386-5815-4 [contents]
[i6]
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Daniel S. Katz, Lois Curfman McInnes, David E. Bernholdt, Abigail Cabunoc Mayes, Neil P. Chue Hong, Jonah Duckles, Sandra Gesing, Michael A. Heroux, Simon Hettrick, Rafael C. Jimenez, Marlon E. Pierce, Belinda Weaver, Nancy Wilkins-Diehr:
Community Organizations: Changing the Culture in Which Research Software Is Developed and Sustained. CoRR abs/1811.08473 (2018)
2017
[j19]
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Sandra Gesing, Jesús Carretero, Francisco Javier García Blas, Johan Montagnat:
Boosting analyses in the life sciences via clusters, grids and clouds. Future Generation Comp. Syst. 67: 325-328 (2017)
[j18]
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Malcolm P. Atkinson, Sandra Gesing, Johan Montagnat, Ian J. Taylor:
Scientific workflows: Past, present and future. Future Generation Comp. Syst. 75: 216-227 (2017)
[c29]
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Sandra Gesing, Michael G. Zentner, Juliana Casavan, Betsy Hillery, Mihaela Vorvoreanu, Randy Heiland, Suresh Marru, Marlon E. Pierce, Nayiri Mullinix, Nancy Maron:
Science Gateways Incubator: Software Sustainability Meets Community Needs. eScience 2017: 477-485
[c28]
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Sandra Gesing, Nancy Wilkins-Diehr, Michelle Barker:
Introduction to Science Gateways and Portals Minitrack. HICSS 2017
[c27]
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Sandra Gesing, Nancy Wilkins-Diehr, Maytal Dahan, Katherine A. Lawrence, Michael G. Zentner, Marlon E. Pierce, Linda Hayden, Suresh Marru:
Science Gateways: The Long Road to the Birth of an Institute. HICSS 2017
[e4]
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Sandra Gesing, Jens Krüger:
Proceedings of the 8th International Workshop on Science Gateways, IWSG 2016, Rome, Italy, June 8-10, 2016. CEUR Workshop Proceedings 1871, CEUR-WS.org 2017 [contents]
[e3]
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Sandra Gesing, Rizos Sakellariou:
Proceedings of the 11th Workshop on Workflows in Support of Large-Scale Science co-located with The International Conference for High Performance Computing, Networking, Storage and Analysis (SC 2016), Salt Lake City, Utah, USA, November 14, 2016. CEUR Workshop Proceedings 1800, CEUR-WS.org 2017 [contents]
[e2]
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Johan Montagnat, Ian Taylor, Sandra Gesing, Rizos Sakellariou:
Proceedings of the 12th Workshop on Workflows in Support of Large-Scale Science, WORKS@SC 2017, Denver, CO, USA, November 12 - 17, 2017. ACM 2017, ISBN 978-1-4503-5129-4 [contents]
[i5]
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Daniel S. Katz, Kyle E. Niemeyer, Sandra Gesing, Lorraine Hwang, Wolfgang Bangerth, Simon Hettrick, Ray Idaszak, Jean Salac, Neil Chue Hong, Santiago Núñez Corrales, Alice Allen, R. Stuart Geiger, Jonah Miller, Emily Chen, Anshu Dubey, Patricia Lago:
Report on the Fourth Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE4). CoRR abs/1705.02607 (2017)
2016
[j17]
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Luis de la Garza, Johannes Veit, András Szolek, Marc Röttig, Stephan Aiche, Sandra Gesing, Knut Reinert, Oliver Kohlbacher:
From the desktop to the grid: scalable bioinformatics via workflow conversion. BMC Bioinformatics 17: 127 (2016)
[j16]
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Sandra Gesing, Nancy Wilkins-Diehr, Michelle Barker, Gabriele Pierantoni:
Science Gateway Workshops 2015 Special Issue Conference Publications. J. Grid Comput. 14(4): 495-498 (2016)
[j15]
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Sandra Gesing, Jens Krüger, Richard Grunzke, Sonja Herres-Pawlis, Alexander Hoffmann:
Using Science Gateways for Bridging the Differences between Research Infrastructures. J. Grid Comput. 14(4): 545-557 (2016)
[j14]
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Junaid Arshad, Alexander Hoffmann, Sandra Gesing, Richard Grunzke, Jens Krüger, Tamás Kiss, Sonja Herres-Pawlis, Gábor Terstyánszky:
Multi-level meta-workflows: new concept for regularly occurring tasks in quantum chemistry. J. Cheminformatics 8(1): 58:1-58:17 (2016)
[c26]
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  - conf/hicss/FergusonGN16
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Holly T. Ferguson, Sandra Gesing, Jarek Nabrzyski:
Measuring Usability in Decision Tools Supporting Collaborations for Environmental Disaster Response. HICSS 2016: 2872-2881
[c25]
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Gabriele Pierantoni, Dermot Frost, Sandra Gesing, Sílvia Delgado Olabarriaga, Mohammad Mahdi Jaghoori, Gábor Terstyánszky, Junaid Arshad:
A Model for Information and Action Flows Connecting Science Gateways to Distributed Computing Infrastructures. IWSG 2016
[i4]
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Daniel S. Katz, Sou-Cheng T. Choi, Kyle E. Niemeyer, James Hetherington, Frank Löffler, Dan Gunter, Ray Idaszak, Steven R. Brandt, Mark A. Miller, Sandra Gesing, Nick D. Jones, Nic Weber, Suresh Marru, Gabrielle Allen, Birgit Penzenstadler, Colin C. Venters, Ethan Davis, Lorraine Hwang, Ilian Todorov, Abani Patra, Miguel de Val-Borro:
Report on the Third Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE3). CoRR abs/1602.02296 (2016)
2015
[j13]
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Nancy Wilkins-Diehr, Sandra Gesing, Tamás Kiss:
Science gateway workshops 2013 special issue conference publications. Concurrency and Computation: Practice and Experience 27(2): 253-257 (2015)
[j12]
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Sonja Herres-Pawlis, Alexander Hoffmann, Ákos Balaskó, Péter Kacsuk, Georg Birkenheuer, André Brinkmann, Luis de la Garza, Jens Krüger, Sandra Gesing, Richard Grunzke, Gábor Terstyánszky, Noam Weingarten:
Quantum chemical meta-workflows in MoSGrid. Concurrency and Computation: Practice and Experience 27(2): 344-357 (2015)
[j11]
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Sandra Gesing, Nancy Wilkins-Diehr:
Science gateway workshops 2014 special issue conference publications. Concurrency and Computation: Practice and Experience 27(16): 4247-4251 (2015)
[j10]
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  - journals/nar/Giraldo-CalderonEMMDTHGMCL15
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Gloria I. Giraldo-Calderón, Scott J. Emrich, Robert M. MacCallum, Gareth Maslen, Emmanuel Dialynas, Pantelis Topalis, Nicholas Ho, Sandra Gesing, Gregory R. Madey, Frank H. Collins, Daniel Lawson:
VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases. Nucleic Acids Research 43(Database-Issue): 707-713 (2015)
[j9]
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  - journals/scpe/CarreteroBG15
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Jesús Carretero, Javier García Blas, Sandra Gesing:
Introduction to the Special Issue on Cloud for Health. Scalable Computing: Practice and Experience 16(1) (2015)
[c24]
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  - conf/cluster/ChoudhuryRHGTE15
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Olivia Choudhury, Dinesh Rajan, Nicholas L. Hazekamp, Sandra Gesing, Douglas Thain, Scott J. Emrich:
Balancing Thread-Level and Task-Level Parallelism for Data-Intensive Workloads on Clusters and Clouds. CLUSTER 2015: 390-393
[c23]
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  - conf/eScience/HazekampSCGET15
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Nicholas L. Hazekamp, Joseph Sarro, Olivia Choudhury, Sandra Gesing, Scott J. Emrich, Douglas Thain:
Scaling Up Bioinformatics Workflows with Dynamic Job Expansion: A Case Study Using Galaxy and Makeflow. e-Science 2015: 332-341
[c22]
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Richard Grunzke, Alvaro Aguilera, Wolfgang E. Nagel, Jens Krüger, Sonja Herres-Pawlis, Alexander Hoffmann, Sandra Gesing:
Managing Complexity in Distributed Data Life Cycles Enhancing Scientific Discovery. e-Science 2015: 371-380
[c21]
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Gary A. McGilvary, Malcolm P. Atkinson, Sandra Gesing, Alvaro Aguilera, Richard Grunzke, Eva Sciacca:
Enhanced Usability of Managing Workflows in an Industrial Data Gateway. e-Science 2015: 495-502
[c20]
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Sandra Gesing, Rion Dooley, Marlon E. Pierce, Jens Krüger, Richard Grunzke, Sonja Herres-Pawlis, Alexander Hoffmann:
Science gateways - leveraging modeling and simulations in HPC infrastructures via increased usability. HPCS 2015: 19-26
[c19]
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  - conf/ucc/HaydelGTMDGH15
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Nicholas Haydel, Sandra Gesing, Ian J. Taylor, Gregory R. Madey, Abdul Dakkak, Simon Garcia De Gonzalo, Wen-mei W. Hwu:
Enhancing the Usability and Utilization of Accelerated Architectures via Docker. UCC 2015: 361-367
[c18]
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  - conf/xsede/SamuelWCRMGW15
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Tabitha K. Samuel, Shunzhou Wan, Peter V. Coveney, Morris Riedel, M. Shahbaz Memon, Sandra Gesing, Nancy Wilkins-Diehr:
Overview of XSEDE-PRACE collaborative projects in 2014. XSEDE 2015: 24:1-24:8
[i3]
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Gary A. McGilvary, Malcolm P. Atkinson, Sandra Gesing, Alvaro Aguilera, Richard Grunzke, Eva Sciacca:
Enhanced Usability of Managing Workflows in an Industrial Data Gateway. CoRR abs/1508.01412 (2015)
[i2]
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  - journals/corr/GesingCT15
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Sandra Gesing, Thomas Richard Connor, Ian J. Taylor:
Genomics and Biological Big Data: Facing Current and Future Challenges around Data and Software Sharing and Reproducibility. CoRR abs/1511.02689 (2015)
[i1]
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  - journals/peerjpre/SanchezTMMPdG15
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Horacio Pérez Sánchez, Vahid Rezaei Tabar, Vitaliy Mezhuyev, Duhu Man, Jorge Peña-García, Helena den-Haan, Sandra Gesing:
Developing science gateways for drug discovery in a grid environment. PeerJ PrePrints 3: e1245 (2015)
2014
[j8]
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  - journals/concurrency/MerelliSGD14
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Ivan Merelli, Horacio Emilio Pérez Sánchez, Sandra Gesing, Daniele D'Agostino:
Latest advances in distributed, parallel, and graphic processing unit accelerated approaches to computational biology. Concurrency and Computation: Practice and Experience 26(10): 1699-1704 (2014)
[j7]
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Richard Grunzke, Sebastian Breuers, Sandra Gesing, Sonja Herres-Pawlis, Martin Kruse, Dirk Blunk, Luis de la Garza, Lars Packschies, Patrick Schäfer, Charlotta Schärfe, Tobias Schlemmer, Thomas Steinke, Bernd Schuller, Ralph Müller-Pfefferkorn, René Jäkel, Wolfgang E. Nagel, Malcolm P. Atkinson, Jens Krüger:
Standards-based metadata management for molecular simulations. Concurrency and Computation: Practice and Experience 26(10): 1744-1759 (2014)
[c17]
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  - conf/bigdata/NabrzyskiLVGB14
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Jarek Nabrzyski, Cheng Liu, Charles Vardeman, Sandra Gesing, Milan Budhatoki:
Agriculture Data for All - Integrated Tools for Agriculture Data Integration, Analytics, and Sharing. BigData Congress 2014: 774-775
[c16]
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  - conf/ccgrid/HazekampCGET14
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Nicholas L. Hazekamp, Olivia Choudhury, Sandra Gesing, Scott J. Emrich, Douglas Thain:
Expanding Tasks of Logical Workflows Into Independent Workflows for Improved Scalability. CCGRID 2014: 548-549
[c15]
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Richard Grunzke, René Jäkel, Wolfgang E. Nagel, Sandra Gesing:
Towards Generic Metadata Management in Distributed Science Gateway Infrastructures. CCGRID 2014: 566-570
[c14]
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  - conf/cloudnet/MazurekPKTSDSJDTBGNS14
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Cezary Mazurek, Juliusz Pukacki, Michal Kosiedowski, Szymon Trocha, Michael Sullivan, Hemant Darbari, Amit Saxena, Rajendra Joshi, Devdatt P. Dubhashi, Subazini Thankaswamy, Paul Brenner, Sandra Gesing, Jarek Nabrzyski, Anil Srivastava:
Federated clouds for biomedical research: Integrating OpenStack for ICTBioMed. CLOUDNET 2014: 294-299
[c13]
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  - conf/ihtc/GesingNJ14
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Sandra Gesing, Jarek Nabrzyski, Shantenu Jha:
Gateways to high-perfomance and distributed computing resources for global health challenges. IHTC 2014: 1-5
[c12]
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Sonja Herres-Pawlis, Alexander Hoffmann, Luis de la Garza, Jens Krüger, Sandra Gesing, Richard Grunzke, Wolfgang E. Nagel, Gábor Terstyánszky, Noam Weingarten:
Meta-Metaworkflows for Combining Quantum Chemistry and Molecular Dynamics in the MoSGrid Science Gateway. IWSG 2014: 73-78
[c11]
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Richard Grunzke, Jürgen Hesser, Jürgen Starek, Nick Kepper, Sandra Gesing, Marcus Hardt, Volker Hartmann, Stephan Kindermann, Jan Potthoff, Michael Hausmann, Ralph Müller-Pfefferkorn, René Jäkel:
Device-Driven Metadata Management Solutions for Scientific Big Data Use Cases. PDP 2014: 317-321
[c10]
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Sandra Gesing, Malcolm P. Atkinson, Rosa Filgueira, Ian J. Taylor, Andrew Jones, Vlado Stankovski, Chee Sun Liew, Alessandro Spinuso, Gábor Terstyánszky, Péter Kacsuk:
Workflows in a dashboard: a new generation of usability. WORKS@SC 2014: 82-93
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Klaus Kofler, Gregory J. Davis, Sandra Gesing:
SAMPO: an agent-based mosquito point model in OpenCL. SpringSim (ADS) 2014: 5
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Sandra Gesing, Jens Krüger, Richard Grunzke, Luis de la Garza, Sonja Herres-Pawlis, Alexander Hoffmann:
Molecular Simulation Grid (MosGrid): A Science Gateway Tailored to the Molecular Simulation Community. Science Gateways for Distributed Computing Infrastructures 2014: 151-165
2013
[j6]
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Lars Packschies, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Martin Kruse, Ulrich Lang, Ralph Müller-Pfefferkorn, Patrick Schäfer, Tobias Schlemmer, Thomas Steinke, Klaus-Dieter Warzecha, Andreas Zink:
The MoSGrid - e-science gateway: molecular simulations in a distributed computing environment. J. Cheminformatics 5(S-1): 3 (2013)
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Sonja Herres-Pawlis, Alexander Hoffmann, Sandra Gesing, Luis de la Garza, Jens Krüger, Richard Grunzke:
User-friendly metaworkflows in quantum chemistry. CLUSTER 2013: 1-3
[c7]
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Sonja Herres-Pawlis, Alexander Hoffmann, Sandra Gesing, Jens Krüger, Ákos Balaskó, Péter Kacsuk, Richard Grunzke, Georg Birkenheuer, Lars Packschies:
User-Friendly Workflows in Quantum Chemistry. IWSG 2013
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Sandra Gesing, Malcolm P. Atkinson, Iraklis A. Klampanos, Michelle Galea, Michael R. Berthold, Roberto Barbera, Diego Scardaci, Gábor Terstyánszky, Tamás Kiss, Péter Kacsuk:
The demand for consistent web-based workflow editors. WORKS@SC 2013: 112-123
2012
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Sandra Gesing, Richard Grunzke, Jens Krüger, Georg Birkenheuer, Martin Wewior, Patrick Schäfer, Bernd Schuller, Johannes Schuster, Sonja Herres-Pawlis, Sebastian Breuers, Ákos Balaskó, Miklos Kozlovszky, Anna Szikszay Fabri, Lars Packschies, Péter Kacsuk, Dirk Blunk, Thomas Steinke, André Brinkmann, Gregor Fels, Ralph Müller-Pfefferkorn, René Jäkel, Oliver Kohlbacher:
A Single Sign-On Infrastructure for Science Gateways on a Use Case for Structural Bioinformatics. J. Grid Comput. 10(4): 769-790 (2012)
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Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Thomas Steinke, Klaus-Dieter Warzecha, Martin Wewior:
MoSGrid: efficient data management and a standardized data exchange format for molecular simulations in a grid environment. J. Cheminformatics 4(S-1): 21 (2012)
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Sandra Gesing, Jens Krüger:
Workshop Series IWSG-Life. HealthGrid 2012: 115-118
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Sonja Herres-Pawlis, Georg Birkenheuer, André Brinkmann, Sandra Gesing, Richard Grunzke, René Jäkel, Oliver Kohlbacher, Jens Krüger, Ines dos Santos Vieira:
Workflow-enhanced conformational analysis of guanidine zinc complexes via a science gateway. HealthGrid 2012: 142-151
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Sandra Gesing, Tristan Glatard, Jens Krüger, Sílvia Delgado Olabarriaga, Tony Solomonides, Jonathan C. Silverstein, Johan Montagnat, Alban Gaignard, Dagmar Krefting:
HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences, Proceedings of HealthGrid 2012, Amsterdam, The Netherlands, 21-23 May 2012. Studies in Health Technology and Informatics 175, IOS Press 2012, ISBN 978-1-61499-053-6 [contents]
2011
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Sandra Gesing, Jano I. van Hemert, Péter Kacsuk, Oliver Kohlbacher:
Special Issue: Portals for life sciences - Providing intuitive access to bioinformatic tools. Concurrency and Computation: Practice and Experience 23(3): 223-234 (2011)
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Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Nico Kruber, Jens Krüger, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Hans-Günther Schmalz, Thomas Steinke, Klaus-Dieter Warzecha, Martin Wewior:
MoSGrid - a molecular simulation grid as a new tool in computational chemistry, biology and material science. J. Cheminformatics 3(S-1): 14 (2011)
[j1]
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Jens Krüger, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Gregor Fels, Sandra Gesing, Richard Grunzke, Oliver Kohlbacher, Nico Kruber, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Sonja Herres-Pawlis, Patrick Schäfer, Hans-Günther Schmalz, Thomas Steinke, Klaus-Dieter Warzecha, Martin Wewior:
Molecular simulation grid. J. Cheminformatics 3(S-1): 17 (2011)
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Sandra Gesing, Richard Grunzke, Ákos Balaskó, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Gregor Fels, Sonja Herres-Pawlis, Péter Kacsuk, Miklos Kozlovszky, Jens Krüger, Lars Packschies, Patrick Schäfer, Bernd Schuller, Johannes Schuster, Thomas Steinke, Anna Szikszay Fabri, Martin Wewior, Ralph Müller-Pfefferkorn, Oliver Kohlbacher:
Granular Security for a Science Gateway in Structural Bioinformatics. IWSG-Life 2011
2010
[c2]
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Sandra Gesing, Jano I. van Hemert, Jos Koetsier, Andreas Bertsch, Oliver Kohlbacher:
TOPP goes Rapid The OpenMS Proteomics Pipeline in a Grid-Enabled Web Portal. CCGRID 2010: 598-599
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Georg Birkenheuer, Sebastian Breuers, André Brinkmann, Dirk Blunk, Gregor Fels, Sandra Gesing, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Lars Packschies:
Grid-Workflows in Molecular Science. Software Engineering (Workshops) 2010: 177-184

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