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Jan Funke
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- affiliation: HHMI Janelia Research Campus, Ashburn, VA, USA
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2020 – today
- 2023
- [c21]Steffen Wolf, Manan Lalit, Katie McDole, Jan Funke:
Unsupervised Learning of Object-Centric Embeddings for Cell Instance Segmentation in Microscopy Images. ICCV 2023: 21206-21215 - [c20]Jeff L. Rhoades, Arlo Sheridan, Mukul Narwani, Brian Reicher, Mark Larson, Shuhan Xie, Tri Nguyen, Aaron T. Kuan, Alexandra Pacureanu, Wei-Chung Allen Lee, Jan Funke:
Unpaired Image Enhancement for Neurite Segmentation in x-ray Tomography. ISBI 2023: 1-5 - [i12]Steffen Wolf, Manan Lalit, Henry Westmacott
, Katie McDole, Jan Funke:
Unsupervised Learning of Object-Centric Embeddings for Cell Instance Segmentation in Microscopy Images. CoRR abs/2310.08501 (2023) - 2022
- [c19]Nils Eckstein
, Habib Bukhari, Alexander S. Bates
, Gregory S. X. E. Jefferis
, Jan Funke
:
Discriminative Attribution from Paired Images. ECCV Workshops (4) 2022: 406-422 - [c18]Peter Hirsch
, Caroline Malin-Mayor
, Anthony Santella, Stephan Preibisch
, Dagmar Kainmueller
, Jan Funke
:
Tracking by Weakly-Supervised Learning and Graph Optimization for Whole-Embryo C. elegans lineages. MICCAI (4) 2022: 25-35 - [i11]Peter Hirsch, Caroline Malin-Mayor, Anthony Santella, Stephan Preibisch, Dagmar Kainmueller, Jan Funke:
Tracking by weakly-supervised learning and graph optimization for whole-embryo C. elegans lineages. CoRR abs/2208.11467 (2022) - 2021
- [c17]Josef Lorenz Rumberger, Xiaoyan Yu, Peter Hirsch, Melanie Dohmen, Vanessa Emanuela Guarino, Ashkan Mokarian, Lisa Mais, Jan Funke, Dagmar Kainmueller:
How Shift Equivariance Impacts Metric Learning for Instance Segmentation. ICCV 2021: 7108-7116 - [i10]Josef Lorenz Rumberger, Xiaoyan Yu, Peter Hirsch, Melanie Dohmen, Vanessa Emanuela Guarino, Ashkan Mokarian, Lisa Mais, Jan Funke, Dagmar Kainmueller:
How Shift Equivariance Impacts Metric Learning for Instance Segmentation. CoRR abs/2101.05846 (2021) - [i9]Nils Eckstein, Alexander S. Bates, Gregory S. X. E. Jefferis, Jan Funke:
Discriminative Attribution from Counterfactuals. CoRR abs/2109.13412 (2021) - 2020
- [c16]Steffen Wolf, Fred A. Hamprecht, Jan Funke:
Inpainting Networks Learn to Separate Cells in Microscopy Images. BMVC 2020 - [c15]Nils Eckstein, Julia M. Buhmann, Matthew Cook, Jan Funke:
Microtubule Tracking in Electron Microscopy Volumes. MICCAI (5) 2020: 99-108 - [i8]Steffen Wolf, Fred A. Hamprecht, Jan Funke:
Instance Separation Emerges from Inpainting. CoRR abs/2003.00891 (2020) - [i7]Nils Eckstein, Julia M. Buhmann, Matthew Cook, Jan Funke:
Microtubule Tracking in Electron Microscopy Volumes. CoRR abs/2009.08371 (2020)
2010 – 2019
- 2019
- [j1]Jan Funke
, Fabian Tschopp
, William Grisaitis
, Arlo Sheridan
, Chandan Singh, Stephan Saalfeld
, Srinivas C. Turaga:
Large Scale Image Segmentation with Structured Loss Based Deep Learning for Connectome Reconstruction. IEEE Trans. Pattern Anal. Mach. Intell. 41(7): 1669-1680 (2019) - 2018
- [c14]Jan Funke, Lisa Mais, Andrew Champion, Natalie Dye, Dagmar Kainmueller
:
A Benchmark for Epithelial Cell Tracking. ECCV Workshops (6) 2018: 437-445 - [c13]Jan Funke, Chong Zhang, Tobias Pietzsch, Miguel Ángel González Ballester, Stephan Saalfeld:
The candidate multi-cut for cell segmentation. ISBI 2018: 649-653 - [c12]Julia M. Buhmann, Renate Krause, Rodrigo Ceballos Lentini, Nils Eckstein, Matthew Cook, Srinivas C. Turaga, Jan Funke:
Synaptic Partner Prediction from Point Annotations in Insect Brains. MICCAI (2) 2018: 309-316 - [c11]Larissa Heinrich
, Jan Funke, Constantin Pape
, Juan Nunez-Iglesias
, Stephan Saalfeld:
Synaptic Cleft Segmentation in Non-isotropic Volume Electron Microscopy of the Complete Drosophila Brain. MICCAI (2) 2018: 317-325 - [i6]Larissa Heinrich, Jan Funke, Constantin Pape, Juan Nunez-Iglesias, Stephan Saalfeld:
Synaptic Cleft Segmentation in Non-Isotropic Volume Electron Microscopy of the Complete Drosophila Brain. CoRR abs/1805.02718 (2018) - [i5]Julia M. Buhmann, Renate Krause, Rodrigo Ceballos Lentini, Nils Eckstein, Matthew Cook, Srinivas C. Turaga, Jan Funke:
Synaptic partner prediction from point annotations in insect brains. CoRR abs/1806.08205 (2018) - 2017
- [i4]Jan Funke, Chong Zhang
, Tobias Pietzsch, Stephan Saalfeld:
The Candidate Multi-Cut for Cell Segmentation. CoRR abs/1707.00907 (2017) - [i3]Jan Funke, Fabian Tschopp, William Grisaitis
, Arlo Sheridan, Chandan Singh, Stephan Saalfeld, Srinivas C. Turaga:
A Deep Structured Learning Approach Towards Automating Connectome Reconstruction from 3D Electron Micrographs. CoRR abs/1709.02974 (2017) - 2016
- [c10]Alexander Vakhitov
, Jan Funke, Francesc Moreno-Noguer:
Accurate and Linear Time Pose Estimation from Points and Lines. ECCV (7) 2016: 583-599 - [c9]Julia M. Buhmann, Stephan Gerhard, Matthew Cook, Jan Funke
:
Tracking of microtubules in anisotropic volumes of neural tissue. ISBI 2016: 326-329 - [c8]Jan Funke, Jonas Klein, Francesc Moreno-Noguer, Albert Cardona, Matthew Cook:
Structured learning of assignment models for neuron reconstruction to minimize topological errors. ISBI 2016: 607-611 - [c7]Fabian Tschopp
, Julien N. P. Martel, Srinivas C. Turaga, Matthew Cook, Jan Funke:
Efficient convolutional neural networks for pixelwise classification on heterogeneous hardware systems. ISBI 2016: 1225-1228 - 2015
- [c6]Jan Funke, Fred A. Hamprecht, Chong Zhang
:
Learning to Segment: Training Hierarchical Segmentation under a Topological Loss. MICCAI (3) 2015: 268-275 - [c5]Anna Kreshuk, Jan Funke, Albert Cardona, Fred A. Hamprecht:
Who Is Talking to Whom: Synaptic Partner Detection in Anisotropic Volumes of Insect Brain. MICCAI (1) 2015: 661-668 - [i2]Jan Funke, Jonas Klein, Albert Cardona, Matthew Cook:
A Tolerant Edit Distance for Evaluation and Training of Electron Microscopy Reconstruction Algorithms. CoRR abs/1503.02291 (2015) - 2014
- [b1]Jan Funke:
Automatic Neuron Reconstruction from Anisotropic Electron Microscopy Volumes. ETH Zurich, Zürich, Switzerland, 2014 - [c4]Florian Jug
, Tobias Pietzsch, Dagmar Kainmüller
, Jan Funke, Matthias Kaiser, Erik van Nimwegen
, Carsten Rother, Gene Myers:
Optimal Joint Segmentation and Tracking of Escherichia Coli in the Mother Machine. BAMBI 2014: 25-36 - [c3]Jan Funke
, Julien N. P. Martel, Stephan Gerhard, Björn Andres
, Dan C. Ciresan, Alessandro Giusti
, Luca Maria Gambardella, Jürgen Schmidhuber, Hanspeter Pfister
, Albert Cardona, Matthew Cook:
Candidate Sampling for Neuron Reconstruction from Anisotropic Electron Microscopy Volumes. MICCAI (1) 2014: 17-24 - 2012
- [c2]Jan Funke, Björn Andres
, Fred A. Hamprecht, Albert Cardona, Matthew Cook:
Efficient automatic 3D-reconstruction of branching neurons from EM data. CVPR 2012: 1004-1011 - 2011
- [i1]Jan Funke, Björn Andres, Fred A. Hamprecht, Albert Cardona, Matthew Cook:
Multi-Hypothesis CRF-Segmentation of Neural Tissue in Anisotropic EM Volumes. CoRR abs/1109.2449 (2011)
2000 – 2009
- 2009
- [c1]Tobias Pietzsch, Jan Funke
:
A Framework For Evaluating Visual SLAM. BMVC 2009: 1-11
Coauthor Index
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last updated on 2024-08-05 21:16 CEST by the dblp team
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