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Journal Articles
- 2022
[j11]Matteo D'Antonio
, Jennifer P. Nguyen, Timothy D. Arthur, Hiroko Matsui, Margaret K. R. Donovan, Agnieszka D'Antonio-Chronowska, Kelly A. Frazer:
In heart failure reactivation of RNA-binding proteins is associated with the expression of 1, 523 fetal-specific isoforms. PLoS Comput. Biol. 18(2) (2022)- 2017
- [j10]William W. Greenwald, He Li, Erin N. Smith, Paola Benaglio, Naoki Nariai, Kelly A. Frazer:
Pgltools: a genomic arithmetic tool suite for manipulation of Hi-C peak and other chromatin interaction data. BMC Bioinform. 18(1): 207:1-207:6 (2017) - 2015
- [j9]Christopher M. DeBoever, Emanuela M. Ghia, Peter J. Shepard, Laura Rassenti, Christian L. Barrett, Kristen Jepsen, Catriona H. M. Jamieson, Dennis Carson, Thomas J. Kipps, Kelly A. Frazer:
Transcriptome Sequencing Reveals Potential Mechanism of Cryptic 3' Splice Site Selection in SF3B1-mutated Cancers. PLoS Comput. Biol. 11(3) (2015) - 2014
- [j8]Chun-Pei Cheng, I-Ying Kuo, Hakan Alakus, Kelly A. Frazer, Olivier Harismendy, Yi-Ching Wang, Vincent S. Tseng:
Network-based analysis identifies epigenetic biomarkers of esophageal squamous cell carcinoma progression. Bioinform. 30(21): 3054-3061 (2014) - [j7]Andrew R. Carson, Erin N. Smith, Hiroko Matsui, Sigrid K. Brækkan, Kristen Jepsen, John-Bjarne Hansen, Kelly A. Frazer:
Effective filtering strategies to improve data quality from population-based whole exome sequencing studies. BMC Bioinform. 15: 125 (2014) - [j6]Chun-Pei Cheng, Christopher M. DeBoever, Kelly A. Frazer, Yu-Cheng Liu, Vincent S. Tseng:
MiningABs: mining associated biomarkers across multi-connected gene expression datasets. BMC Bioinform. 15: 173 (2014) - 2013
- [j5]Shawn E. Yost, Hakan Alakus, Hiroko Matsui, Richard B. Schwab, Kristen Jepsen, Kelly A. Frazer, Olivier Harismendy:
Mutascope: sensitive detection of somatic mutations from deep amplicon sequencing. Bioinform. 29(15): 1908-1909 (2013) - 2011
- [j4]Marcus Kinsella, Olivier Harismendy, Masakazu Nakano, Kelly A. Frazer, Vineet Bafna:
Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs. Bioinform. 27(8): 1068-1075 (2011) - 2010
- [j3]Gaurav Bhatia, Vikas Bansal, Olivier Harismendy, Nicholas J. Schork, Eric J. Topol, Kelly A. Frazer, Vineet Bafna:
A Covering Method for Detecting Genetic Associations between Rare Variants and Common Phenotypes. PLoS Comput. Biol. 6(10) (2010) - 2004
- [j2]Kelly A. Frazer, Lior Pachter, Alexander Poliakov, Edward M. Rubin, Inna Dubchak:
VISTA: computational tools for comparative genomics. Nucleic Acids Res. 32(Web-Server-Issue): 273-279 (2004) - 2000
- [j1]Chris Mayor, Michael Brudno, Jody R. Schwartz, Alexander Poliakov, Edward M. Rubin, Kelly A. Frazer, Lior Pachter, Inna Dubchak:
VISTA : visualizing global DNA sequence alignments of arbitrary length. Bioinform. 16(11): 1046-1047 (2000)
Conference and Workshop Papers
- 2021
- [c1]Jun Wang, Ren Liu, Youngbin Tchoe, Alessio Paolo Buccino, Akshay Paul, Agnieszka D'Antonio-Chronowska, Kelly A. Frazer, Chul Kim, Shadi A. Dayeh, Gert Cauwenberghs:
Low-Power 256-Channel Nanowire Electrode-on-Chip Neural Interface for Intracellular Electrophysiology. BioCAS 2021: 1-4
Coauthor Index
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