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Semantic ScholarLee A. D. Cooper
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- affiliation: Emory University, Atlanta, GA, USA
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2010 – today
- 2018
[j14]Andrei A. Ivanov, Brian Revennaugh, Lauren Rusnak, Valentina Gonzalez-Pecchi, Xiulei Mo, Margaret A. Johns, Yuhong Du, Lee A. D. Cooper, Carlos S. Moreno, Fadlo R. Khuri, Haian Fu:
The OncoPPi Portal: an integrative resource to explore and prioritize protein-protein interactions for cancer target discovery. Bioinformatics 34(7): 1183-1191 (2018)- [c23]Deepak Roy Chittajallu, Neal Siekierski, Sanghoon Lee, Samuel Gerber, Jonathan Beezley, David Manthey, David A. Gutman, Lee A. D. Cooper:
Vectorized persistent homology representations for characterizing glandular architecture in histology images. ISBI 2018: 232-235 - 2017
- [c22]
- 2016
- [c21]Lee A. D. Cooper, Jayashree Kalpathy-Cramer, William Hsu, Ashish Sharma:
Quantitative Imaging and Imaging Informatics in the Era of Precision Medicine. AMIA 2016 - 2015
- [j13]Tahsin M. Kurç, Xin Qi, Daihou Wang, Fusheng Wang, George Teodoro, Lee A. D. Cooper, Michael Nalisnik, Zhi-Yang Li, Joel H. Saltz, David J. Foran:
Scalable analysis of Big pathology image data cohorts using efficient methods and high-performance computing strategies. BMC Bioinformatics 16: 399:1-399:21 (2015) - [c20]Yue Hou, Lee A. D. Cooper, Scott Wilkinson, Adam I. Marcus, Daniel J. Brat:
Spatiotemporal visualization of cell membrane dynamics and protein colocalization reveals correlation between membrane dynamics and metastatic invasion. BCB 2015: 476-477 - [c19]Michael Nalisnik, David A. Gutman, Jun Kong, Lee A. D. Cooper:
An interactive learning framework for scalable classification of pathology images. BigData 2015: 928-935 - 2014
- [j12]George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Scott Klasky, Joel H. Saltz:
Region templates: Data representation and management for high-throughput image analysis. Parallel Computing 40(10): 589-610 (2014) - [c18]George Teodoro, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Joel H. Saltz:
Comparative Performance Analysis of Intel (R) Xeon Phi (TM), GPU, and CPU: A Case Study from Microscopy Image Analysis. IPDPS 2014: 1063-1072 - [i4]George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Scott Klasky, Joel H. Saltz:
Region Templates: Data Representation and Management for Large-Scale Image Analysis. CoRR abs/1405.7958 (2014) - 2013
- [j11]Joel H. Saltz, George Teodoro, Tony Pan, Lee A. D. Cooper, Jun Kong, Scott Klasky, Tahsin M. Kurç:
Feature-based analysis of large-scale spatio-temporal sensor data on hybrid architectures. IJHPCA 27(3): 263-272 (2013) - [j10]David A. Gutman, Jake Cobb, Dhananjaya Somanna, Yuna Park, Fusheng Wang, Tahsin M. Kurç, Joel H. Saltz, Daniel J. Brat, Lee A. D. Cooper:
Research and applications: Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data. JAMIA 20(6): 1091-1098 (2013) - [j9]George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Joel H. Saltz:
Efficient irregular wavefront propagation algorithms on hybrid CPU-GPU machines. Parallel Computing 39(4-5): 189-211 (2013) - [c17]Jun Kong, Fusheng Wang, George Teodoro, Lee A. D. Cooper, Carlos S. Moreno, Tahsin M. Kurç, Tony Pan, Joel H. Saltz, Daniel J. Brat:
High-performance computational analysis of glioblastoma pathology images with database support identifies molecular and survival correlates. BIBM 2013: 229-236 - [c16]George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Norbert Podhorszki, Scott Klasky, Joel H. Saltz:
High-throughput Analysis of Large Microscopy Image Datasets on CPU-GPU Cluster Platforms. IPDPS 2013: 103-114 - [i3]George Teodoro, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Joel H. Saltz:
Comparative Performance Analysis of Intel Xeon Phi, GPU, and CPU. CoRR abs/1311.0378 (2013) - 2012
- [j8]Lee A. D. Cooper, Jun Kong, David A. Gutman, Fusheng Wang, Jingjing Gao, Christina Appin, Sharath R. Cholleti, Tony Pan, Ashish Sharma, Lisa Scarpace, Tom Mikkelsen, Tahsin M. Kurç, Carlos S. Moreno, Daniel J. Brat, Joel H. Saltz:
Integrated morphologic analysis for the identification and characterization of disease subtypes. JAMIA 19(2): 317-323 (2012) - [j7]Lee A. D. Cooper, Alexis B. Carter, Alton B. Farris, Fusheng Wang, Jun Kong, David A. Gutman, Patrick M. Widener, Tony C. Pan, Sharath R. Cholleti, Ashish Sharma, Tahsin M. Kurç, Daniel J. Brat, Joel H. Saltz:
Digital Pathology: Data-Intensive Frontier in Medical Imaging. Proceedings of the IEEE 100(4): 991-1003 (2012) - [c15]Tahsin M. Kurç, Joel H. Saltz, George Teodoro, Tony Pan, Lee A. D. Cooper, Jun Kong, David A. Gutman, Daniel J. Brat, Fusheng Wang:
High Performance Computing for Integrative Analysis of Large Pathology Image Datasets. AMIA 2012 - [c14]Sourabh Khire, Lee A. D. Cooper, Yuna Park, Alexis B. Carter, Nikil Jayant, Joel H. Saltz:
ZPEG: A hybrid DPCM-DCT based approach for compression of Z-stack images. EMBC 2012: 5424-5427 - [c13]George Teodoro, Tahsin M. Kurç, Tony Pan, Lee A. D. Cooper, Jun Kong, Patrick M. Widener, Joel H. Saltz:
Accelerating Large Scale Image Analyses on Parallel, CPU-GPU Equipped Systems. IPDPS 2012: 1093-1104 - [i2]George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Joel H. Saltz:
Efficient Irregular Wavefront Propagation Algorithms on Hybrid CPU-GPU Machines. CoRR abs/1209.3314 (2012) - [i1]George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Joel H. Saltz:
High-throughput Execution of Hierarchical Analysis Pipelines on Hybrid Cluster Platforms. CoRR abs/1209.3332 (2012) - 2011
- [j6]Jun Kong, Lee A. D. Cooper, Fusheng Wang, David A. Gutman, Jingjing Gao, Candace Chisolm, Ashish Sharma, Tony Pan, Erwin G. Van Meir, Tahsin M. Kurç, Carlos S. Moreno, Joel H. Saltz, Daniel J. Brat:
Integrative, Multimodal Analysis of Glioblastoma Using TCGA Molecular Data, Pathology Images, and Clinical Outcomes. IEEE Trans. Biomed. Engineering 58(12): 3469-3474 (2011) - [c12]Jun Kong, Lee A. D. Cooper, Carlos S. Moreno, Fusheng Wang, Tahsin M. Kurç, Joel H. Saltz, Daniel J. Brat:
In silico analysis of nuclei in glioblastoma using large-scale microscopy images improves prediction of treatment response. EMBC 2011: 87-90 - [c11]Jun Kong, Lee A. D. Cooper, Tahsin M. Kurç, Daniel J. Brat, Joel H. Saltz:
Towards building computerized image analysis framework for nucleus discrimination in microscopy images of diffuse glioma. EMBC 2011: 6605-6608 - [c10]Lee A. D. Cooper, Joel H. Saltz, Ümit V. Çatalyürek, Kun Huang:
Acceleration of Two Point Correlation Function Calculation for Pathology Image Segmentation. HISB 2011: 174-181 - [c9]Lee A. D. Cooper, Kun Huang, Manuel Ujaldon:
Parallel Automatic Registration of Large Scale Microscopic Images on Multiprocessor CPUs and GPUs. IPDPS Workshops 2011: 1367-1376 - [c8]Lee A. D. Cooper, Jun Kong, Fusheng Wang, Tahsin M. Kurç, Carlos S. Moreno, Daniel J. Brat, Joel H. Saltz:
Morphological signatures and genomic correlates in glioblastoma. ISBI 2011: 1624-1627 - [c7]Jun Kong, Lee A. D. Cooper, Fusheng Wang, Candace Chisolm, Carlos S. Moreno, Tahsin M. Kurç, Patrick M. Widener, Daniel J. Brat, Joel H. Saltz:
A comprehensive framework for classification of nuclei in digital microscopy imaging: An application to diffuse gliomas. ISBI 2011: 2128-2131 - [c6]Jun Kong, Lee A. D. Cooper, Ashish Sharma, Tahsin M. Kurç, Daniel J. Brat, Joel H. Saltz:
A new steerable pressure force for parametric deformable models. Medical Imaging: Image Processing 2011: 79623N - 2010
- [j5]Lee A. D. Cooper, Jun Kong, David A. Gutman, Fusheng Wang, Sharath R. Cholleti, Tony C. Pan, Patrick M. Widener, Ashish Sharma, Tom Mikkelsen, Adam E. Flanders, Daniel L. Rubin, Erwin G. Van Meir, Tahsin M. Kurç, Carlos S. Moreno, Daniel J. Brat, Joel H. Saltz:
An Integrative Approach for In Silico Glioma Research. IEEE Trans. Biomed. Engineering 57(10): 2617-2621 (2010) - [c5]Lee A. D. Cooper, Joel H. Saltz, Raghu Machiraju, Kun Huang:
Two-point correlation as a feature for histology images: Feature space structure and correlation updating. CVPR Workshops 2010: 79-86 - [c4]Fusheng Wang, Tahsin M. Kurç, Patrick M. Widener, Tony Pan, Jun Kong, Lee A. D. Cooper, David A. Gutman, Ashish Sharma, Sharath R. Cholleti, Vijay Kumar:
High-Performance Systems for in Silico Microscopy Imaging Studies. DILS 2010: 3-18 - [c3]Jun Kong, Lee A. D. Cooper, Ashish Sharma, Tahsin M. Kurç, Daniel J. Brat, Joel H. Saltz:
Texture based image recognition in microscopy images of diffuse gliomas with multi-class gentle boosting mechanism. ICASSP 2010: 457-460 - [c2]Patrick M. Widener, Tahsin M. Kurç, Wenjin Chen, Fusheng Wang, Lin Yang, Jun Hu, Vijay Kumar, Vicky Chu, Lee A. D. Cooper, Jun Kong, Ashish Sharma, Tony Pan, Joel H. Saltz, David J. Foran:
High Performance Computing Techniques for Scaling Image Analysis Workflows. PARA (2) 2010: 67-77
2000 – 2009
- 2009
- [j4]Lee A. D. Cooper, Olcay Sertel, Jun Kong, Gerard Lozanski, Kun Huang, Metin N. Gurcan:
Feature-based registration of histopathology images with different stains: An application for computerized follicular lymphoma prognosis. Computer Methods and Programs in Biomedicine 96(3): 182-192 (2009) - [j3]Antonio Ruiz, Manuel Ujaldon, Lee A. D. Cooper, Kun Huang:
Non-rigid Registration for Large Sets of Microscopic Images on Graphics Processors. Signal Processing Systems 55(1-3): 229-250 (2009) - 2008
- [j2]Kishore Mosaliganti, Tony Pan, Randall Ridgway, Richard Sharp, Lee A. D. Cooper, Alex Gulacy, Ashish Sharma, M. Okan Irfanoglu, Raghu Machiraju, Tahsin M. Kurç, Alain de Bruin, Pamela Wenzel, Gustavo Leone, Joel H. Saltz, Kun Huang:
An imaging workflow for characterizing phenotypical change in large histological mouse model datasets. Journal of Biomedical Informatics 41(6): 863-873 (2008) - [j1]Kishore Mosaliganti, Lee A. D. Cooper, Richard Sharp, Raghu Machiraju, Gustavo Leone, Kun Huang, Joel H. Saltz:
Reconstruction of Cellular Biological Structures from Optical Microscopy Data. IEEE Trans. Vis. Comput. Graph. 14(4): 863-876 (2008) - 2006
- [c1]
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