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2020 – today
- 2020
[j69]Leyla J. Garcia, Bérénice Batut, Melissa L. Burke, Mateusz Kuzak, Fotis E. Psomopoulos, Ricardo Arcila, Teresa K. Attwood, Niall Beard, Denise Carvalho-Silva, Alexandros C. Dimopoulos, Victoria Dominguez Del Angel, Michel Dumontier, Kim T. Gurwitz, Roland Krause, Peter McQuilton, Loredana Le Pera, Sarah L. Morgan, Päivi Rauste, Allegra Via, Pascal Kahlem, Gabriella Rustici, Celia W. G. van Gelder, Patricia M. Palagi:
Ten simple rules for making training materials FAIR. PLoS Computational Biology 16(5) (2020)
2010 – 2019
- 2019
- [j68]Teresa K. Attwood
, Sarah Blackford, Michelle D. Brazas, Angela Davies, Maria Victoria Schneider:
A global perspective on evolving bioinformatics and data science training needs. Briefings Bioinform. 20(2): 398-404 (2019) - [j67]Allegra Via, Teresa K. Attwood, Pedro L. Fernandes, Sarah L. Morgan, Maria Victoria Schneider, Patricia M. Palagi, Gabriella Rustici, Rochelle E. Tractenberg:
A new pan-European Train-the-Trainer programme for bioinformatics: pilot results on feasibility, utility and sustainability of learning. Briefings Bioinform. 20(2): 405-415 (2019) - [j66]Alex L. Mitchell, Teresa K. Attwood, Patricia C. Babbitt, Matthias Blum, Peer Bork, Alan Bridge, Shoshana D. Brown, Hsin-Yu Chang, Sara El-Gebali, Matthew Fraser, Julian Gough, David Haft, Hongzhan Huang, Ivica Letunic, Rodrigo Lopez, Aurelien Luciani, Fábio Madeira, Aron Marchler-Bauer, Huaiyu Mi, Darren A. Natale, Marco Necci, Gift Nuka, Christine A. Orengo, Arun Prasad Pandurangan, Typhaine Paysan-Lafosse, Sebastien Pesseat, Simon C. Potter, Matloob Qureshi, Neil D. Rawlings, Nicole Redaschi, Lorna Richardson, Catherine Rivoire, Gustavo A. Salazar, Amaia Sangrador-Vegas, Christian J. A. Sigrist, Ian Sillitoe, Granger G. Sutton, Narmada Thanki, Paul D. Thomas, Silvio C. E. Tosatto, Siew-Yit Yong, Robert D. Finn:
InterPro in 2019: improving coverage, classification and access to protein sequence annotations. Nucleic Acids Res. 47(Database-Issue): D351-D360 (2019) - [j65]Fran Lewitter, Philip E. Bourne, Teresa K. Attwood:
Ten Simple Rules for avoiding and resolving conflicts with your colleagues. PLoS Computational Biology 15(1) (2019) - 2018
- [c8]Susanne Hollmann, Teresa K. Attwood, Erik Bongcam-Rudloff, Deborah Duca, Domenica D'Elia, Christoph Endrullat, Marcus Frohme, Katrin Messerschmidt, Babette Regierer:
Standardization and Quality Assurance in Life-Science Research - Crucially Needed or Unnecessary and Annoying Regulation? ICT Innovations 2018: 13-20 - 2017
- [j64]Carlos Horro, Martin Cook, Teresa K. Attwood, Michelle D. Brazas, John M. Hancock, Patricia M. Palagi, Manuel Corpas, Rafael C. Jimenez:
BioCIDER: a Contextualisation InDEx for biological Resources discovery. Bioinform. 33(16): 2607-2608 (2017) - [j63]Robert D. Finn, Teresa K. Attwood, Patricia C. Babbitt, Alex Bateman, Peer Bork, Alan Bridge, Hsin-Yu Chang, Zsuzsanna Dosztányi, Sara El-Gebali, Matthew Fraser, Julian Gough, David Haft, Gemma L. Holliday, Hongzhan Huang, Xiaosong Huang, Ivica Letunic, Rodrigo Lopez, Shennan Lu, Aron Marchler-Bauer, Huaiyu Mi, Jaina Mistry, Darren A. Natale, Marco Necci, Gift Nuka, Christine A. Orengo, Youngmi Park, Sebastien Pesseat, Damiano Piovesan, Simon C. Potter, Neil D. Rawlings, Nicole Redaschi, Lorna Richardson, Catherine Rivoire, Amaia Sangrador-Vegas, Christian J. A. Sigrist, Ian Sillitoe, Ben Smithers, Silvano Squizzato, Granger G. Sutton, Narmada Thanki, Paul D. Thomas, Silvio C. E. Tosatto, Cathy H. Wu, Ioannis Xenarios, Lai-Su L. Yeh, Siew-Yit Yong, Alex L. Mitchell:
InterPro in 2017 - beyond protein family and domain annotations. Nucleic Acids Res. 45(Database-Issue): D190-D199 (2017) - 2015
- [j62]Manuel Corpas, Rafael C. Jimenez, Erik Bongcam-Rudloff, Aidan Budd, Michelle D. Brazas, Pedro L. Fernandes, Bruno A. Gaëta, Celia W. G. van Gelder, Eija Korpelainen, Fran Lewitter, Annette McGrath, Daniel MacLean, Patricia M. Palagi, Kristian Rother, Jan Taylor, Allegra Via, Mick Watson, Maria Victoria Schneider, Teresa K. Attwood:
The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers. Bioinform. 31(1): 140-142 (2015) - [j61]Alex L. Mitchell, Hsin-Yu Chang, Louise Daugherty, Matthew Fraser, Sarah Hunter, Rodrigo Lopez, Craig McAnulla, Conor McMenamin, Gift Nuka, Sebastien Pesseat, Amaia Sangrador-Vegas, Maxim Scheremetjew, Claudia Rato, Siew-Yit Yong, Alex Bateman, Marco Punta, Teresa K. Attwood, Christian J. A. Sigrist, Nicole Redaschi, Catherine Rivoire, Ioannis Xenarios, Daniel Kahn, Dominique Guyot, Peer Bork, Ivica Letunic, Julian Gough, Matt E. Oates, Daniel H. Haft, Hongzhan Huang, Darren A. Natale, Cathy H. Wu, Christine A. Orengo, Ian Sillitoe, Huaiyu Mi, Paul D. Thomas, Robert D. Finn:
The InterPro protein families database: the classification resource after 15 years. Nucleic Acids Res. 43(Database-Issue): 213-221 (2015) - [j60]Teresa K. Attwood, Erik Bongcam-Rudloff, Michelle D. Brazas, Manuel Corpas, Pascale Gaudet, Fran Lewitter, Nicola J. Mulder, Patricia M. Palagi, Maria Victoria Schneider, Celia W. G. van Gelder:
GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training. PLoS Computational Biology 11(4) (2015) - 2013
- [j59]Jingchu Luo, Harm Nijveen, Teresa K. Attwood, David Phillip Judge, Sándor Pongor, David Landsman, Martin Bishop:
Obituary: In memory of Jack Leunissen. Briefings Bioinform. 14(3): 261-262 (2013) - [j58]Allegra Via, Thomas Blicher, Erik Bongcam-Rudloff, Michelle D. Brazas, Catherine Brooksbank, Aidan Budd, Javier De Las Rivas, Jacqueline Dreyer, Pedro L. Fernandes, Celia W. G. van Gelder, Joachim Jacob, Rafael C. Jimenez, Jane Loveland, Federico Morán, Nicola J. Mulder, Tommi H. Nyrönen, Kristian Rother, Maria Victoria Schneider, Teresa K. Attwood:
Best practices in bioinformatics training for life scientists. Briefings Bioinform. 14(5): 528-537 (2013) - [j57]Pascale Gaudet, Monica C. Munoz-Torres, Marc Robinson-Rechavi, Teresa K. Attwood, Alex Bateman, J. Michael Cherry, Renate Kania, Claire O'Donovan, Chisato Yamasaki:
DATABASE, The Journal of Biological Databases and Curation, is now the official journal of the International Society for Biocuration. Database 2013 (2013) - [j56]Rafael C. Jimenez, Juan P. Albar, Jong Bhak, Marie-Claude Blatter, Thomas Blicher, Michelle D. Brazas, Catherine Brooksbank, Aidan Budd, Javier De Las Rivas, Jacqueline Dreyer, Marc A. van Driel, Michael J. Dunn, Pedro L. Fernandes, Celia W. G. van Gelder, Henning Hermjakob, Vassilios Ioannidis, David Phillip Judge, Pascal Kahlem, Eija Korpelainen, Hans-Joachim Kraus, Jane Loveland, Christine Mayer, Jennifer McDowall, Federico Morán, Nicola J. Mulder, Tommi H. Nyrönen, Kristian Rother, Gustavo A. Salazar, Reinhard Schneider, Allegra Via, Jose M. Villaveces, Ping Yu, Maria Victoria Schneider, Teresa K. Attwood, Manuel Corpas:
iAnn: an event sharing platform for the life sciences. Bioinform. 29(15): 1919-1921 (2013) - 2012
- [j55]Maria Victoria Schneider, Peter Walter, Marie-Claude Blatter, James Watson, Michelle D. Brazas, Kristian Rother, Aidan Budd, Allegra Via, Celia W. G. van Gelder, Joachim Jacob, Pedro L. Fernandes, Tommi H. Nyrönen, Javier De Las Rivas, Thomas Blicher, Rafael C. Jimenez, Jane Loveland, Jennifer McDowall, Philip Jones, Brendan W. Vaughan, Rodrigo Lopez, Teresa K. Attwood, Catherine Brooksbank:
Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers. Briefings Bioinform. 13(3): 383-389 (2012) - [j54]Teresa K. Attwood, Alain Coletta, Gareth Muirhead, Athanasia Pavlopoulou, Peter B. Philippou, Ivan Popov, Carlos Romá-Mateo, Athina Theodosiou, Alex L. Mitchell:
The PRINTS database: a fine-grained protein sequence annotation and analysis resource - its status in 2012. Database 2012 (2012) - [j53]Sarah W. Burge, Teresa K. Attwood, Alex Bateman, Tanya Z. Berardini, J. Michael Cherry, Claire O'Donovan, Ioannis Xenarios, Pascale Gaudet:
Biocurators and Biocuration: surveying the 21st century challenges. Database 2012 (2012) - [j52]Sarah Hunter, Philip Jones, Alex L. Mitchell, Rolf Apweiler, Teresa K. Attwood, Alex Bateman, Thomas Bernard, David Binns, Peer Bork, Sarah W. Burge, Edouard De Castro, Penny C. Coggill, Matthew Corbett, Ujjwal Das, Louise Daugherty, Lauranne Duquenne, Robert D. Finn, Matthew Fraser, Julian Gough, Daniel H. Haft, Nicolas Hulo, Daniel Kahn, Elizabeth Kelly, Ivica Letunic, David Lonsdale, Rodrigo Lopez, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Conor McMenamin, Huaiyu Mi, Prudence Mutowo-Meullenet, Nicola J. Mulder, Darren A. Natale, Christine A. Orengo, Sebastien Pesseat, Marco Punta, Antony F. Quinn, Catherine Rivoire, Amaia Sangrador-Vegas, Jeremy D. Selengut, Christian J. A. Sigrist, Maxim Scheremetjew, John G. Tate, Manjulapramila Thimmajanarthanan, Paul D. Thomas, Cathy H. Wu, Corin Yeats, Siew-Yit Yong:
InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res. 40(Database-Issue): 306-312 (2012) - [j51]Bas Vroling, David Thorne, Philip McDermott, Henk-Jan Joosten, Teresa K. Attwood, Steve Pettifer, Gert Vriend:
NucleaRDB: information system for nuclear receptors. Nucleic Acids Res. 40(Database-Issue): 377-380 (2012) - 2011
- [j50]Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki:
Towards BioDBcore: a community-defined information specification for biological databases. Database 2011 (2011) - [j49]Bas Vroling, David Thorne, Philip McDermott, Teresa K. Attwood, Gert Vriend, Steve Pettifer:
Integrating GPCR-specific information with full text articles. BMC Bioinform. 12: 362 (2011) - [j48]Steve Pettifer, Philip McDermott, James Marsh, David Thorne, Alice Villéger, Terri K. Attwood:
Ceci n'est pas un hamburger: modelling and representing the scholarly article. Learned Publishing 24(3): 207-220 (2011) - [j47]Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki:
Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Res. 39(Database-Issue): 7-10 (2011) - [j46]Allegra Via, Javier De Las Rivas, Teresa K. Attwood, David Landsman, Michelle D. Brazas, Jack A. M. Leunissen, Anna Tramontano, Maria Victoria Schneider:
Ten Simple Rules for Developing a Short Bioinformatics Training Course. PLoS Computational Biology 7(10) (2011) - [c7]Paul Thompson, Yoshinobu Kano, John McNaught, Steve Pettifer, Teresa K. Attwood, John A. Keane, Sophia Ananiadou:
Promoting Interoperability of Resources in META-SHARE. Workshop on Language Resources@IJCNLP 2011: 50-58 - 2010
- [j45]Maria Victoria Schneider, James Watson, Teresa K. Attwood, Kristian Rother, Aidan Budd, Jennifer McDowall, Allegra Via, Pedro L. Fernandes, Tommi H. Nyrönen, Thomas Blicher, Philip Jones, Marie-Claude Blatter, Javier De Las Rivas, David Phillip Judge, Wouter van der Gool, Catherine Brooksbank:
Bioinformatics training: a review of challenges, actions and support requirements. Briefings Bioinform. 11(6): 544-551 (2010) - [j44]Terri K. Attwood, Douglas B. Kell, Philip McDermott, James Marsh, Stephen Pettifer, David Thorne:
Utopia documents: linking scholarly literature with research data. Bioinform. 26(18) (2010) - [j43]Alain Coletta, John W. Pinney, David Y. Weiss Solís, James Marsh, Steve Pettifer, Teresa K. Attwood:
Low-complexity regions within protein sequences have position-dependent roles. BMC Syst. Biol. 4: 43 (2010) - [j42]Steve Pettifer, Jon C. Ison, Matús Kalas, Dave Thorne, Philip McDermott, Inge Jonassen, Ali Liaquat, José María Fernández, Jose Manuel Rodriguez, David G. Pisano, Christophe Blanchet, Mahmut Uludag, Peter M. Rice, Edita Bartaseviciute, Kristoffer Rapacki, Maarten L. Hekkelman, Olivier Sand, Heinz Stockinger, Andrew B. Clegg, Erik Bongcam-Rudloff, Jean Salzemann, Vincent Breton, Teresa K. Attwood, Graham Cameron, Gert Vriend:
The EMBRACE web service collection. Nucleic Acids Res. 38(Web-Server-Issue): 683-688 (2010) - [j41]Maarten L. Hekkelman, Tim A. H. te Beek, Steve Pettifer, David Thorne, Terri K. Attwood, Gert Vriend:
WIWS: a protein structure bioinformatics Web service collection. Nucleic Acids Res. 38(Web-Server-Issue): 719-723 (2010)
2000 – 2009
- 2009
- [j40]Steve Pettifer, David Thorne, Philip McDermott, Terri K. Attwood, J. Baran, Jan Christian Bryne, Taavi Hupponen, D. Mowbray, Gert Vriend:
An active registry for bioinformatics web services. Bioinform. 25(16): 2090-2091 (2009) - [j39]Steve Pettifer, David Thorne, Philip McDermott, James Marsh, Alice Villéger, Douglas B. Kell, Teresa K. Attwood:
Visualising biological data: a semantic approach to tool and database integration. BMC Bioinform. 10(S-6) (2009) - [j38]Sarah Hunter, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Ujjwal Das, Louise Daugherty, Lauranne Duquenne, Robert D. Finn, Julian Gough, Daniel H. Haft, Nicolas Hulo, Daniel Kahn, Elizabeth Kelly, Aurélie Laugraud, Ivica Letunic, David Lonsdale, Rodrigo Lopez, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex L. Mitchell, Nicola J. Mulder, Darren A. Natale, Christine A. Orengo, Antony F. Quinn, Jeremy D. Selengut, Christian J. A. Sigrist, Manjula Thimma, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats:
InterPro: the integrative protein signature database. Nucleic Acids Res. 37(Database-Issue): 211-215 (2009) - [j37]Jane E. Mabey Gilsenan, Graham Atherton, Jennifer Bartholomew, Peter F. Giles, Teresa K. Attwood, David W. Denning, Paul Bowyer:
Aspergillus Genomes and the Aspergillus Cloud. Nucleic Acids Res. 37(Database-Issue): 509-514 (2009) - 2008
- [j36]Heinz Stockinger, Teresa K. Attwood, Shahid Nadeem Chohan, Richard G. Côté, Philippe Cudré-Mauroux, Laurent Falquet, Pedro L. Fernandes, Robert D. Finn, Taavi Hupponen, Eija Korpelainen, Alberto Labarga, Aurélie Laugraud, Tania Lima, Evangelos Pafilis, Marco Pagni, Steve Pettifer, Isabelle Phan, Nazim Rahman:
Experience using web services for biological sequence analysis. Briefings Bioinform. 9(6): 493-505 (2008) - 2007
- [j35]Manuel Corpas, James Sinnott, Dave Thorne, Steve Pettifer, Terri K. Attwood, et al.:
PFF - an integrated database of residues and fragments critical for protein folding. BMC Syst. Biol. 1(S-1): P48 (2007) - [j34]Hosil Park, Julie Huxley-Jones, Teresa K. Attwood, Jordi Bella:
A Cys-capping motif unique to small leucine-rich repeat proteins and proteoglycans of the extracellular matrix. BMC Syst. Biol. 1(S-1): P55 (2007) - [j33]Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Virginie Buillard, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Louise Daugherty, Mark Dibley, Robert D. Finn, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicolas Hulo, Sarah Hunter, Daniel Kahn, Alexander Kanapin, Anish Kejariwal, Alberto Labarga, Petra S. Langendijk-Genevaux, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex L. Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Christine A. Orengo, Robert Petryszak, Jeremy D. Selengut, Christian J. A. Sigrist, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats:
New developments in the InterPro database. Nucleic Acids Res. 35(Database-Issue): 224-228 (2007) - [c6]Steve Pettifer, Katy Wolstencroft, Pinar Alper, Teresa K. Attwood, Alain Coletta, Carole A. Goble, Peter Li, Philip McDermott, James Marsh, Tom Oinn, James Sinnott, David Thorne:
myGrid and UTOPIA: An Integrated Approach to Enacting and Visualising in Silico Experiments in the Life Sciences. DILS 2007: 59-70 - [c5]Jee-Hyub Kim, Alex L. Mitchell, Teresa K. Attwood, Melanie Hilario:
Learning to extract relations for protein annotation. ISMB/ECCB (Supplement of Bioinformatics) 2007: 256-263 - 2005
- [j32]Anna Divoli, Teresa K. Attwood:
BioIE: extracting informative sentences from the biomedical literature. Bioinform. 21(9): 2138-2139 (2005) - [j31]Alex L. Mitchell, Anna Divoli, Jee-Hyub Kim, Melanie Hilario, I. Selimas, Teresa K. Attwood:
METIS: multiple extraction techniques for informative sentences. Bioinform. 21(22): 4196-4197 (2005) - [j30]Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Paul Bradley, Peer Bork, Phillip Bucher, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Jennifer McDowall, Alex L. Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Marco Pagni, Chris P. Ponting, Emmanuel Quevillon, Jeremy D. Selengut, Christian J. A. Sigrist, Ville Silventoinen, David J. Studholme, Robert Vaughan, Cathy H. Wu:
InterPro, progress and status in 2005. Nucleic Acids Res. 33(Database-Issue): 201-205 (2005) - [c4]Dave Thorne, Steve Pettifer, Terri K. Attwood:
Integrating Abstract and Physical Molecular Model Interaction. TPCG 2005: 75-82 - [p1]Steve Pettifer, James Sinnott, Teresa K. Attwood:
Integrated Approaches for Bioinformatic Data Analysis and Visualization - Challenges, Opportunities and New Solutions. Data Analysis and Visualization in Genomics and Proteomics 2005: 135-152 - 2004
- [j29]J. E. Mabey, M. J. Anderson, Peter F. Giles, Crispin J. Miller, Terri K. Attwood, Norman W. Paton, Erich Bornberg-Bauer, G. D. Robson, Stephen G. Oliver, David W. Denning:
CADRE: the Central Aspergillus Data REpository. Nucleic Acids Res. 32(Database-Issue): 401-405 (2004) - [j28]Neil Maudling, Terri K. Attwood:
FAN: fingerprint analysis of nucleotide sequences. Nucleic Acids Res. 32(Web-Server-Issue): 620-623 (2004) - [c3]Melanie Hilario, Alex L. Mitchell, Jee-Hyub Kim, Paul Bradley, Terri K. Attwood:
Classifying Protein Fingerprints. PKDD 2004: 197-208 - 2003
- [j27]Alex L. Mitchell, Jacqueline Renée Reich, Terri K. Attwood:
PRECIS: Protein reports engineered from concise information in SWISS-PROT. Bioinform. 19(13): 1664-1671 (2003) - [j26]Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Daniel Barrell, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Sam Griffiths-Jones, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, David Lonsdale, Ville Silventoinen, Sandra E. Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Jeremy D. Selengut, Florence Servant, Christian J. A. Sigrist, Robert Vaughan, Evgeni M. Zdobnov:
The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res. 31(1): 315-318 (2003) - [j25]Terri K. Attwood, Paul Bradley, Darren R. Flower, Anna Gaulton, Neil Maudling, Alex L. Mitchell, G. Moulton, A. Nordle, K. Paine, P. Taylor, A. Uddin, Christianna Zygouri:
PRINTS and its automatic supplement, prePRINTS. Nucleic Acids Res. 31(1): 400-402 (2003) - [j24]Anna Gaulton, Terri K. Attwood:
Motif3D: relating protein sequence motifs to 3D structure. Nucleic Acids Res. 31(13): 3333-3336 (2003) - [j23]Paul D. Taylor, Terri K. Attwood, Darren R. Flower:
BPROMPT: a consensus server for membrane protein prediction. Nucleic Acids Res. 31(13): 3698-3700 (2003) - 2002
- [j22]Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Sam Griffiths-Jones, Daniel H. Haft, Henning Hermjakob, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, Sue Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Florence Servant, Christian J. A. Sigrist:
InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites. Briefings Bioinform. 3(3): 225-235 (2002) - [j21]Terri K. Attwood:
The PRINTS Database: A Resource for Identification of Protein Families. Briefings Bioinform. 3(3): 252-264 (2002) - [j20]Phillip W. Lord, J. N. Selley, Terri K. Attwood:
CINEMA-MX: a modular multiple alignment editor. Bioinform. 18(10): 1402-1403 (2002) - [j19]Terri K. Attwood, Martin J. Blythe, Darren R. Flower, Anna Gaulton, J. E. Mabey, Neil Maudling, L. McGregor, Alex L. Mitchell, G. Moulton, K. Paine, Philip Scordis:
PRINTS and PRINTS-S shed light on protein ancestry. Nucleic Acids Res. 30(1): 239-241 (2002) - 2001
- [j18]J. N. Selley, J. Swift, Terri K. Attwood:
EASY-an Expert Analysis SYstem for interpreting database search outputs. Bioinform. 17(1): 105-106 (2001) - [j17]Terri K. Attwood, Crispin J. Miller:
Which Craft Is Best in Bioinformatics?. Comput. Chem. 25(4): 329-339 (2001) - [j16]Jacqueline Renée Reich, Alex L. Mitchell, Carole A. Goble, Terri K. Attwood:
Toward More Intelligent Annotation Tools: A Prototype. IEEE Intell. Syst. 16(6): 42-51 (2001) - [j15]Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov:
The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Res. 29(1): 37-40 (2001) - [c2]Crispin J. Miller, Terri K. Attwood:
PSST... The Probabilisitic Sequence Search Tool. BIBE 2001: 33-40 - [c1]Phillip W. Lord, Jacqueline Renée Reich, Alex L. Mitchell, Robert D. Stevens, Terri K. Attwood, Carole A. Goble:
PRECIS: An Automated Pipeline for Producing Concise Reports About Proteins. BIBE 2001: 57-64 - 2000
- [j14]Terri K. Attwood:
The Role of Pattern Databases in Sequence Analysis. Briefings Bioinform. 1(1): 45-59 (2000) - [j13]Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov:
InterPro-an integrated documentation resource for protein families, domains and functional sites. Bioinform. 16(12): 1145-1150 (2000) - [j12]Terri K. Attwood, Michael D. R. Croning, Darren R. Flower, A. P. Lewis, J. E. Mabey, Philip Scordis, J. N. Selley, W. Wright:
PRINTS-S: the database formerly known as PRINTS. Nucleic Acids Res. 28(1): 225-227 (2000)
1990 – 1999
- 1999
- [j11]W. Wright, Philip Scordis, Terri K. Attwood:
BLAST PRINTS - alternative perspectives on sequence similarity. Bioinform. 15(6): 523-524 (1999) - [j10]Philip Scordis, Darren R. Flower, Terri K. Attwood:
FingerPRINTScan: intelligent searching of the PRINTS motif database. Bioinform. 15(10): 799-806 (1999) - [j9]Terri K. Attwood, Darren R. Flower, A. P. Lewis, J. E. Mabey, S. R. Morgan, Philip Scordis, J. N. Selley, W. Wright:
PRINTS prepares for the new millennium. Nucleic Acids Res. 27(1): 220-225 (1999) - 1998
- [j8]Terri K. Attwood, Michael E. Beck, Darren R. Flower, Philip Scordis, J. N. Selley:
The PRINTS protein fingerprint database in its fifth year. Nucleic Acids Res. 26(1): 304-308 (1998) - 1997
- [j7]Terri K. Attwood, H. Avison, Michael E. Beck, Maria C. Bewley, Alan J. Bleasby, F. Brewster, P. Cooper, Kirill Degtyarenko, A. J. Geddes, Darren R. Flower, M. P. Kelly, Shaun Lott, K. M. Measures, David J. Parry-Smith, D. N. Perkins, Philip Scordis, David Scott, C. Worledge:
The PRINTS Database of Protein Fingerprints: A Novel Information Resource for Computational Molecular Biology. J. Chem. Inf. Comput. Sci. 37(3): 417-424 (1997) - [j6]Terri K. Attwood, Michael E. Beck, Alan J. Bleasby, Kirill Degtyarenko, A. D. Michie, David J. Parry-Smith:
Novel developments with the PRINTS protein fingerprint database. Nucleic Acids Res. 25(1): 212-217 (1997) - 1996
- [j5]D. N. Perkins, Terri K. Attwood:
XFINGER: a tool for searching and visualising protein fingerprints and patterns. Comput. Appl. Biosci. 12(2): 89-94 (1996) - [j4]Terri K. Attwood, Michael E. Beck, Alan J. Bleasby, Kirill Degtyarenko, David J. Parry-Smith:
Progress with the PRINTS protein fingerprint database. Nucleic Acids Res. 24(1): 182-188 (1996) - 1992
- [j3]D. Akrigg, Terri K. Attwood, Alan J. Bleasby, John B. C. Findlay, A. C. North, N. A. Maughan, David J. Parry-Smith, D. N. Perkins, J. C. Wootton:
SERPENT - an information storage and analysis resource for protein sequences. Comput. Appl. Biosci. 8(3): 295-296 (1992) - [j2]David J. Parry-Smith, Terri K. Attwood:
ADSP - a new package for computational sequence analysis. Comput. Appl. Biosci. 8(5): 451-459 (1992) - 1991
- [j1]David J. Parry-Smith, Terri K. Attwood:
SOMAP: a novel interactive approach to multiple protein sequences alignment. Comput. Appl. Biosci. 7(2): 233-235 (1991)
Coauthor Index