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Semantic ScholarArzucan Özgür
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- affiliation: Bogaziçi University, Department of Computer Engineering, Istanbul, Turkey
- affiliation: University of Michigan, Department of EECS, Ann Arbor, MI, USA
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2020 – today
- 2020
[i9]Hakime Öztürk, Arzucan Özgür, Philippe Schwaller, Teodoro Laino, Elif Ozkirimli Olmez:
Exploring Chemical Space using Natural Language Processing Methodologies for Drug Discovery. CoRR abs/2002.06053 (2020)- [i8]Saziye Betül Özates, Arzucan Özgür, Tunga Güngör, Balkiz Öztürk:
A Hybrid Approach to Dependency Parsing: Combining Rules and Morphology with Deep Learning. CoRR abs/2002.10116 (2020) - [i7]Utku Türk, Furkan Atmaca, Saziye Betül Özates, Gözde Berk, Seyyit Talha Bedir, Abdullatif Köksal, Balkiz Öztürk Basaran, Tunga Güngör, Arzucan Özgür:
Resources for Turkish Dependency Parsing: Introducing the BOUN Treebank and the BoAT Annotation Tool. CoRR abs/2002.10416 (2020)
2010 – 2019
- 2019
- [j24]Rezarta Islamaj Dogan
, Sun Kim, Andrew Chatr-aryamontri, Chih-Hsuan Wei, Donald C. Comeau, Rui Antunes, Sérgio Matos, Qingyu Chen, Aparna Elangovan, Nagesh C. Panyam, Karin Verspoor, Hongfang Liu, Yanshan Wang, Zhuang Liu, Berna Altinel, Zehra Melce Hüsünbeyi, Arzucan Özgür, Aris Fergadis, Chen-Kai Wang, Hong-Jie Dai, Tung Tran, Ramakanth Kavuluru, Ling Luo, Albert Steppi, Jinfeng Zhang, Jinchan Qu, Zhiyong Lu:
Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine. Database 2019: bay147 (2019) - [j23]Ilknur Karadeniz, Arzucan Özgür:
Linking entities through an ontology using word embeddings and syntactic re-ranking. BMC Bioinform. 20(1): 156:1-156:12 (2019) - [j22]N. Ozlem Ozcan, Arzucan Özgür, Fikret Gürgen:
Statistical representation models for mutation information within genomic data. BMC Bioinform. 20(1): 324:1-324:13 (2019) - [j21]Mert Tiftikci, Arzucan Özgür, Yongqun He, Junguk Hur:
Machine learning-based identification and rule-based normalization of adverse drug reactions in drug labels. BMC Bioinform. 20-S(21): 707 (2019) - [c32]Utku Türk, Furkan Atmaca, Saziye Betül Özates, Abdullatif Köksal, Balkiz Öztürk Basaran, Tunga Gungor, Arzucan Özgür:
Turkish Treebanking: Unifying and Constructing Efforts. LAW@ACL 2019: 166-177 - [c31]Ilknur Karadeniz, Ömer Faruk Tuna, Arzucan Özgür:
BOUN-ISIK Participation: An Unsupervised Approach for the Named Entity Normalization and Relation Extraction of Bacteria Biotopes. BioNLP-OST@EMNLP-IJNCLP 2019: 150-157 - [c30]Atif Emre Yüksel, Yacsar Alim Türkmen, Arzucan Özgür, Berna Altinel:
Turkish Tweet Classification with Transformer Encoder. RANLP 2019: 1380-1387 - [c29]Melike Esma Ilter, Lale Akarun, Arzucan Özgür:
Identifying Image Related Sentences in News Articles. SIU 2019: 1-4 - [i6]Hakime Öztürk, Elif Ozkirimli Olmez, Arzucan Özgür:
WideDTA: prediction of drug-target binding affinity. CoRR abs/1902.04166 (2019) - 2018
- [j20]Hakime Öztürk, Elif Ozkirimli Olmez, Arzucan Özgür:
A novel methodology on distributed representations of proteins using their interacting ligands. Bioinform. 34(13): i295-i303 (2018) - [j19]Hakime Öztürk, Arzucan Özgür, Elif Ozkirimli Olmez:
DeepDTA: deep drug-target binding affinity prediction. Bioinform. 34(17): i821-i829 (2018) - [j18]Junguk Hur, Arzucan Özgür, Yongqun He:
Ontology-based literature mining and class effect analysis of adverse drug reactions associated with neuropathy-inducing drugs. J. Biomedical Semantics 9(1): 17:1-17:10 (2018) - [j17]Arda Çelebi, Arzucan Özgür:
Segmenting hashtags and analyzing their grammatical structure. J. Assoc. Inf. Sci. Technol. 69(5): 675-686 (2018) - [c28]Saziye Betül Özates, Arzucan Özgür, Tunga Gungor, Balkiz Öztürk:
A Morphology-Based Representation Model for LSTM-Based Dependency Parsing of Agglutinative Languages. CoNLL Shared Task (2) 2018: 238-247 - [i5]Hakime Öztürk, Elif Ozkirimli Olmez, Arzucan Özgür:
DeepDTA: Deep Drug-Target Binding Affinity Prediction. CoRR abs/1801.10193 (2018) - [i4]Eda Okur, Hakan Demir, Arzucan Özgür:
Named Entity Recognition on Twitter for Turkish using Semi-supervised Learning with Word Embeddings. CoRR abs/1810.08732 (2018) - [i3]Hakime Öztürk, Arzucan Özgür, Elif Ozkirimli Olmez:
A chemical language based approach for protein - ligand interaction prediction. CoRR abs/1811.00761 (2018) - 2017
- [j16]Ferhat Aydin, Zehra Melce Hüsünbeyi, Arzucan Özgür:
Automatic query generation using word embeddings for retrieving passages describing experimental methods. Database 2017: baw166 (2017) - [j15]Gizem Sogancioglu, Hakime Öztürk, Arzucan Özgür:
BIOSSES: a semantic sentence similarity estimation system for the biomedical domain. Bioinform. 33(14): i49-i58 (2017) - [j14]Junguk Hur, Arzucan Özgür, Yongqun He:
Ontology-based literature mining of E. coli vaccine-associated gene interaction networks. J. Biomedical Semantics 8(1): 12:1-12:10 (2017) - [c27]Deger Ayata, Murat Saraclar, Arzucan Özgür:
BUSEM at SemEval-2017 Task 4A Sentiment Analysis with Word Embedding and Long Short Term Memory RNN Approaches. SemEval@ACL 2017: 777-783 - [c26]Deger Ayata, Murat Saraclar, Arzucan Özgür:
Turkish tweet sentiment analysis with word embedding and machine learning. SIU 2017: 1-4 - [c25]Deger Ayata, Murat Saraclar, Arzucan Özgür:
Political opinion/sentiment prediction via long short term memory recurrent neural networks on Twitter. SIU 2017: 1-4 - [i2]Arda Çelebi, Arzucan Özgür:
Description of the BOUN System for the Trilingual Entity Detection and Linking Tasks at TAC KBP 2017. TAC 2017 - [i1]Mert Tiftikci, Arzucan Özgür, Yongqun He, Junguk Hur:
Extracting Adverse Drug Reactions using Deep Learning and Dictionary Based Approaches. TAC 2017 - 2016
- [j13]Arzucan Özgür, Junguk Hur, Yongqun He:
The Interaction Network Ontology-supported modeling and mining of complex interactions represented with multiple keywords in biomedical literature. BioData Min. 9: 41:1-41:17 (2016) - [j12]Sun Kim, Rezarta Islamaj Dogan, Andrew Chatr-aryamontri, Christie S. Chang, Rose Oughtred, Jennifer M. Rust, Riza Batista-Navarro, Jacob Carter, Sophia Ananiadou, Sérgio Matos, André Santos, David Campos, José Luís Oliveira, Onkar Singh, Jitendra Jonnagaddala, Hong-Jie Dai, Emily Chia-Yu Su, Yung-Chun Chang, Yu-Chen Su, Chun-Han Chu, Chien Chin Chen, Wen-Lian Hsu, Yifan Peng, Cecilia N. Arighi, Cathy H. Wu, K. Vijay-Shanker, Ferhat Aydin, Zehra Melce Hüsünbeyi, Arzucan Özgür, Soo-Yong Shin, Dongseop Kwon, Kara Dolinski, Mike Tyers, W. John Wilbur, Donald C. Comeau:
BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID. Database 2016 (2016) - [j11]Hakime Öztürk, Elif Ozkirimli Olmez, Arzucan Özgür:
A comparative study of SMILES-based compound similarity functions for drug-target interaction prediction. BMC Bioinform. 17: 128 (2016) - [j10]Erinç Gökdeniz, Arzucan Özgür, Resit Canbeyli:
Automated Neuroanatomical Relation Extraction: A Linguistically Motivated Approach with a PVT Connectivity Graph Case Study. Front. Neuroinform. 2016 (2016) - [c24]Mert Tiftikci, Hakan Sahin, Berfu Büyüköz, Alper Yayikçi, Arzucan Özgür:
Ontology-Based Categorization of Bacteria and Habitat Entities using Information Retrieval Techniques. BioNLP (Shared Task) 2016: 56-63 - [c23]Arzucan Özgür, Junguk Hur, Zuoshuang Xiang, Edison Ong, Dragomir R. Radev, Yongqun He:
Ignet: A Centrality and INO-based Web System for Analyzing and Visualizing Literature-mined Networks. ICBO/BioCreative 2016 - [c22]Çagil Sönmez, Arzucan Özgür, Erdem Yörük:
Towards Building a Political Protest Database to Explain Changes in the Welfare State. LaTeCH@ACL 2016 - [c21]Arda Çelebi, Arzucan Özgür:
Segmenting Hashtags using Automatically Created Training Data. LREC 2016 - [c20]Eda Okur, Hakan Demir, Arzucan Özgür:
Named Entity Recognition on Twitter for Turkish using Semi-supervised Learning with Word Embeddings. LREC 2016 - [c19]Saziye Betül Özates, Arzucan Özgür, Dragomir R. Radev:
Sentence Similarity based on Dependency Tree Kernels for Multi-document Summarization. LREC 2016 - 2015
- [j9]Wallace K. B. Chan, Hongjiu Zhang, Jianyi Yang, Jeffrey R. Brender, Junguk Hur, Arzucan Özgür, Yang Zhang:
GLASS: a comprehensive database for experimentally validated GPCR-ligand associations. Bioinform. 31(18): 3035-3042 (2015) - [j8]Junguk Hur, Arzucan Özgür, Zuoshuang Xiang, Yongqun He:
Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions. J. Biomedical Semantics 6: 2 (2015) - [c18]Caner Derici, Kerem Çelik, Ekrem Kutbay, Yigit Aydin, Tunga Güngör, Arzucan Özgür, Günizi Kartal:
Question Analysis for a Closed Domain Question Answering System. CICLing (2) 2015: 468-482 - [c17]Arzucan Özgür, Junguk Hur, Yongqun He:
Extension of the Interaction Network Ontology for Literature Mining of Gene-gene Interaction Networks from Sentences with Multiple Interaction Keywords. BDM2I@ISWC 2015 - 2014
- [c16]Cagil Sonmez, Arzucan Özgür:
A Graph-based Approach for Contextual Text Normalization. EMNLP 2014: 313-324 - [c15]Muhammed Yavuz Nuzumlali, Arzucan Özgür:
Analyzing Stemming Approaches for Turkish Multi-Document Summarization. EMNLP 2014: 702-706 - [c14]Hakan Demir, Arzucan Özgür:
Improving Named Entity Recognition for Morphologically Rich Languages Using Word Embeddings. ICMLA 2014: 117-122 - [c13]Arda Çelebi, Arzucan Özgür:
Self-training a Constituency Parser using n-gram Trees. LREC 2014: 2893-2896 - [c12]Caner Derici, Kerem Çelik, Arzucan Özgür, Tunga Gungor, Ekrem Kutbay, Yigit Aydin, Günizi Kartal:
Rule-based focus extraction in Turkish question answering systems. SIU 2014: 1604-1607 - 2013
- [j7]Saliha Durmus Tekir, Tunahan Çakir, Emre Ardiç, Ali Semih Sayilirbas, Gökhan Konuk, Mithat Konuk, Hasret Sariyer, Azat Ugurlu, Ilknur Karadeniz, Arzucan Özgür, Fatih Erdogan Sevilgen, Kutlu Ö. Ülgen:
PHISTO: pathogen-host interaction search tool. Bioinform. 29(10): 1357-1358 (2013) - [j6]Arda Çelebi, Arzucan Özgür:
N-gram Parsing for Jointly Training a Discriminative Constituency Parser. Polytech. Open Libr. Int. Bull. Inf. Technol. Sci. 47: 5-12 (2013) - [c11]Ilknur Karadeniz, Arzucan Özgür:
Bacteria Biotope Detection, Ontology-based Normalization, and Relation Extraction using Syntactic Rules. BioNLP@ACL (Shared Task) 2013: 170-177 - [c10]Cüneyd Murad Özsert, Arzucan Özgür:
Word Polarity Detection Using a Multilingual Approach. CICLing (2) 2013: 75-82 - [c9]Nadin Kökciyan, Arda Çelebi, Arzucan Özgür, Suzan Üsküdarli:
BOUNCE: Sentiment Classification in Twitter using Rich Feature Sets. SemEval@NAACL-HLT 2013: 554-561 - 2012
- [j5]Junguk Hur, Arzucan Özgür, Zuoshuang Xiang, Yongqun He:
Identification of fever and vaccine-associated gene interaction networks using ontology-based literature mining. J. Biomedical Semantics 3: 18 (2012) - 2011
- [j4]Arzucan Özgür, Zuoshuang Xiang, Dragomir R. Radev, Yongqun He:
Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology. J. Biomedical Semantics 2(S-2): S8 (2011) - [j3]Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E. Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana L. Neves, Alberto D. Pascual-Montano, Arzucan Özgür, Dragomir R. Radev, Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii:
U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinform. 12: 481 (2011) - 2010
- [c8]Vahed Qazvinian, Dragomir R. Radev, Arzucan Özgür:
Citation Summarization Through Keyphrase Extraction. COLING 2010: 895-903
2000 – 2009
- 2009
- [j2]V. Glenn Tarcea, Terry E. Weymouth, Alexander S. Ade, Aaron V. Bookvich, Jing Gao, Vasudeva Mahavisno, Zach Wright, Adriane Chapman, Magesh Jayapandian, Arzucan Özgür, Yuanyuan Tian, James D. Cavalcoli, Barbara Mirel, Jignesh M. Patel, Dragomir R. Radev, Brian D. Athey, David J. States, H. V. Jagadish:
Michigan molecular interactions r2: from interacting proteins to pathways. Nucleic Acids Res. 37(Database-Issue): 642-646 (2009) - [c7]Arzucan Özgür, Dragomir R. Radev:
Supervised Classification for Extracting Biomedical Events. BioNLP@HLT-NAACL (Shared Task) 2009: 111-114 - [c6]Arzucan Özgür, Dragomir R. Radev:
Detecting Speculations and their Scopes in Scientific Text. EMNLP 2009: 1398-1407 - 2008
- [c5]Arzucan Özgür, Thuy Vu, Günes Erkan, Dragomir R. Radev:
Identifying gene-disease associations using centrality on a literature mined gene-interaction network. ISMB 2008: 277-285 - 2007
- [c4]Günes Erkan, Arzucan Özgür, Dragomir R. Radev:
Semi-Supervised Classification for Extracting Protein Interaction Sentences using Dependency Parsing. EMNLP-CoNLL 2007: 228-237 - 2006
- [j1]Arzucan Özgür, Taflan I. Gündem:
Efficient indexing technique for XML-based electronic product catalogs. Electron. Commer. Res. Appl. 5(1): 66-77 (2006) - [c3]Arzucan Özgür, Tunga Güngör:
Classification of Skewed and Homogenous Document Corpora with Class-Based and Corpus-Based Keywords. KI 2006: 91-101 - 2005
- [c2]Arzucan Özgür, Levent Özgür, Tunga Güngör:
Text Categorization with Class-Based and Corpus-Based Keyword Selection. ISCIS 2005: 606-615 - 2004
- [c1]Arzucan Özgür, Haluk Bingöl:
Social Network of Co-occurrence in News Articles. ISCIS 2004: 688-695
Coauthor Index
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