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ORCIDBibTeX records: Leigh Carmody
@article{DBLP:journals/bioinformatics/KarlebachCSCHRMVR23,
author = {Guy Karlebach and
Leigh Carmody and
Jagadish Chandrabose Sundaramurthi and
Elena Casiraghi and
Peter Hansen and
Justin T. Reese and
Christopher J. Mungall and
Giorgio Valentini and
Peter N. Robinson},
title = {An expectation-maximization framework for comprehensive prediction
of isoform-specific functions},
journal = {Bioinform.},
volume = {39},
number = {4},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad132},
doi = {10.1093/BIOINFORMATICS/BTAD132},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KarlebachCSCHRMVR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2312-10904,
author = {Sabrina Toro and
Anna V. Anagnostopoulos and
Sue Bello and
Kai Blumberg and
Rhiannon Cameron and
Leigh Carmody and
Alexander D. Diehl and
Damion M. Dooley and
William D. Duncan and
Petra Fey and
Pascale Gaudet and
Nomi L. Harris and
Marcin P. Joachimiak and
Leila Kiani and
Tiago Lubiana and
Monica C. Munoz{-}Torres and
Shawn T. O'Neil and
David Osumi{-}Sutherland and
Aleix Puig and
Justin P. Reese and
Leonore Reiser and
Sofia M. C. Robb and
Troy Ruemping and
James Seager and
Eric Sid and
Raymund Stefancsik and
Magalie Weber and
Valerie Wood and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Dynamic Retrieval Augmented Generation of Ontologies using Artificial
Intelligence {(DRAGON-AI)}},
journal = {CoRR},
volume = {abs/2312.10904},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2312.10904},
doi = {10.48550/ARXIV.2312.10904},
eprinttype = {arXiv},
eprint = {2312.10904},
timestamp = {Tue, 16 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2312-10904.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/0001GMCLVDBBBCC21,
author = {Sebastian K{\"{o}}hler and
Michael A. Gargano and
Nicolas Matentzoglu and
Leigh Carmody and
David Lewis{-}Smith and
Nicole A. Vasilevsky and
Daniel Danis and
Ganna Balagura and
Gareth Baynam and
Amy M. Brower and
Tiffany J. Callahan and
Christopher G. Chute and
Johanna L. Est and
Peter D. Galer and
Shiva Ganesan and
Matthias Griese and
Matthias Haimel and
Julia Pazmandi and
Marc Hanauer and
Nomi L. Harris and
Michael Hartnett and
Maximilian Hastreiter and
Fabian Hauck and
Yongqun He and
Tim Jeske and
Hugh Kearney and
Gerhard Kindle and
Christoph Klein and
Katrin Knoflach and
Roland Krause and
David Lagorce and
Julie A. McMurry and
Jillian A. Miller and
Monica C. Munoz{-}Torres and
Rebecca L. Peters and
Christina K. Rapp and
Ana Rath and
Shahmir A. Rind and
Avi Z. Rosenberg and
Michael M. Segal and
Markus G. Seidel and
Damian Smedley and
Tomer Talmy and
Yarlalu Thomas and
Samuel A. Wiafe and
Julie Xian and
Zafer Y{\"{u}}ksel and
Ingo Helbig and
Christopher J. Mungall and
Melissa A. Haendel and
Peter N. Robinson},
title = {The Human Phenotype Ontology in 2021},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Database-Issue},
pages = {D1207--D1217},
year = {2021},
url = {https://doi.org/10.1093/nar/gkaa1043},
doi = {10.1093/NAR/GKAA1043},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/0001GMCLVDBBBCC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/LinYDCKMBDDPRH21,
author = {Asiyah Yu Lin and
Yuki Yamagata and
William D. Duncan and
Leigh C. Carmody and
Tatsuya Kushida and
Hiroshi Masuya and
John Beverley and
Biswanath Dutta and
Michael DeBellis and
Zo{\"{e}} May Pendlington and
Paola Roncaglia and
Yongqun He},
title = {A Community Effort for {COVID-19} Ontology Harmonization},
booktitle = {Proceedings of the International Conference on Biomedical Ontologies
2021 co-located with the Workshop on Ontologies for the Behavioural
and Social Sciences (OntoBess 2021) as part of the Bolzano Summer
of Knowledge {(BOSK} 2021), Bozen-Bolzano, Italy, 16-18 September,
2021},
pages = {122--127},
year = {2021},
crossref = {DBLP:conf/icbo/2021},
url = {https://ceur-ws.org/Vol-3073/paper17.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:23 +0100},
biburl = {https://dblp.org/rec/conf/icbo/LinYDCKMBDDPRH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/jowo/DooleyABCCCCLMV21,
author = {Damion M. Dooley and
Liliana Andr{\'{e}}s{-}Hern{\'{a}}ndez and
Georgeta Bordea and
Leigh Carmody and
Duccio Cavalieri and
Lauren E. Chan and
Pol Castellano{-}Escuder and
Carl Lachat and
Fleur Mougin and
Francesco Vitali and
Chen Yang and
Magalie Weber and
Matthew Lange},
title = {{OBO} Foundry Food Ontology Interconnectivity},
booktitle = {Proceedings of the Joint Ontology Workshops 2021 Episode {VII:} The
Bolzano Summer of Knowledge co-located with the 12th International
Conference on Formal Ontology in Information Systems {(FOIS} 2021),
and the 12th International Conference on Biomedical Ontologies {(ICBO}
2021), Bolzano, Italy, September 11-18, 2021},
year = {2021},
crossref = {DBLP:conf/jowo/2021},
url = {https://ceur-ws.org/Vol-2969/paper13-IFOW.pdf},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/jowo/DooleyABCCCCLMV21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ShefchekHGMUBKC20,
author = {Kent A. Shefchek and
Nomi L. Harris and
Michael A. Gargano and
Nicolas Matentzoglu and
Deepak R. Unni and
Matthew H. Brush and
Dan Keith and
Tom Conlin and
Nicole A. Vasilevsky and
Xingmin Aaron Zhang and
James P. Balhoff and
Larry Babb and
Susan M. Bello and
Hannah Blau and
Yvonne M. Bradford and
Seth Carbon and
Leigh Carmody and
Lauren E. Chan and
Valentina Cipriani and
Alayne Cuzick and
Maria G. Della Rocca and
Nathan A. Dunn and
Shahim Essaid and
Petra Fey and
Christian A. Grove and
Jean{-}Philippe F. Gourdine and
Ada Hamosh and
Midori A. Harris and
Ingo Helbig and
Maureen E. Hoatlin and
Marcin P. Joachimiak and
Simon Jupp and
Kenneth B. Lett and
Suzanna E. Lewis and
Craig McNamara and
Zo{\"{e}} May Pendlington and
Clare Pilgrim and
Tim E. Putman and
Vida Ravanmehr and
Justin T. Reese and
Erin Rooney Riggs and
Sofia M. C. Robb and
Paola Roncaglia and
James Seager and
Erik Segerdell and
Morgan Similuk and
Andrea L. Storm and
Courtney Thaxon and
Anne E. Thessen and
Julius O. B. Jacobsen and
Julie A. McMurry and
Tudor Groza and
Sebastian K{\"{o}}hler and
Damian Smedley and
Peter N. Robinson and
Christopher J. Mungall and
Melissa A. Haendel and
Monica C. Munoz{-}Torres and
David Osumi{-}Sutherland},
title = {The Monarch Initiative in 2019: an integrative data and analytic platform
connecting phenotypes to genotypes across species},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Database-Issue},
pages = {D704--D715},
year = {2020},
url = {https://doi.org/10.1093/nar/gkz997},
doi = {10.1093/NAR/GKZ997},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ShefchekHGMUBKC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KohlerCVJDGGHMM19,
author = {Sebastian K{\"{o}}hler and
Leigh Carmody and
Nicole A. Vasilevsky and
Julius O. B. Jacobsen and
Daniel Danis and
Jean{-}Philippe F. Gourdine and
Michael A. Gargano and
Nomi L. Harris and
Nicolas Matentzoglu and
Julie A. McMurry and
David Osumi{-}Sutherland and
Valentina Cipriani and
James P. Balhoff and
Tom Conlin and
Hannah Blau and
Gareth Baynam and
Richard Palmer and
Dylan Gratian and
Hugh J. S. Dawkins and
Michael Segal and
Anna C. Jansen and
Ahmed Muaz and
Willie H. Chang and
Jenna Bergerson and
Stanley J. F. Laulederkind and
Zafer Y{\"{u}}ksel and
Sergi Beltran and
Alexandra F. Freeman and
Panagiotis I. Sergouniotis and
Daniel Durkin and
Andrea L. Storm and
Marc Hanauer and
Michael Brudno and
Susan M. Bello and
Murat Sincan and
Kayli Rageth and
Matthew T. Wheeler and
Renske Oegema and
Halima Lourghi and
Maria G. Della Rocca and
Rachel Thompson and
Francisco Castellanos and
James Priest and
Charlotte Cunningham{-}Rundles and
Ayushi Hegde and
Ruth C. Lovering and
Catherine Hajek and
Annie Olry and
Luigi Notarangelo and
Morgan Similuk and
Xingmin Aaron Zhang and
David G{\'{o}}mez{-}Andr{\'{e}}s and
Hanns Lochm{\"{u}}ller and
H{\'{e}}l{\`{e}}ne Dollfus and
Sergio Rosenzweig and
Shruti Marwaha and
Ana Rath and
Kathleen Sullivan and
Cynthia L. Smith and
Joshua D. Milner and
Doroth{\'{e}}e Leroux and
Cornelius F. Boerkoel and
Amy Klion and
Melody C. Carter and
Tudor Groza and
Damian Smedley and
Melissa A. Haendel and
Chris Mungall and
Peter N. Robinson},
title = {Expansion of the Human Phenotype Ontology {(HPO)} knowledge base and
resources},
journal = {Nucleic Acids Res.},
volume = {47},
number = {Database-Issue},
pages = {D1018--D1027},
year = {2019},
url = {https://doi.org/10.1093/nar/gky1105},
doi = {10.1093/NAR/GKY1105},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KohlerCVJDGGHMM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/ZhangYVGCCDJRPC19,
author = {Xingmin Aaron Zhang and
Amy Yates and
Nicole A. Vasilevsky and
Jean{-}Philippe F. Gourdine and
Tiffany J. Callahan and
Leigh C. Carmody and
Daniel Danis and
Marcin P. Joachimiak and
Vida Ravanmehr and
Emily R. Pfaff and
James Champion and
Kimberly Robasky and
Hao Xu and
Karamarie Fecho and
Nephi A. Walton and
Richard L. Zhu and
Justin Ramsdill and
Christopher J. Mungall and
Sebastian K{\"{o}}hler and
Melissa A. Haendel and
Clement J. McDonald and
Daniel J. Vreeman and
David B. Peden and
Tellen D. Bennett and
James A. Feinstein and
Blake Martin and
Adrianne L. Stefanski and
Lawrence E. Hunter and
Christopher G. Chute and
Peter N. Robinson},
title = {Semantic integration of clinical laboratory tests from electronic
health records for deep phenotyping and biomarker discovery},
journal = {npj Digit. Medicine},
volume = {2},
year = {2019},
url = {https://doi.org/10.1038/s41746-019-0110-4},
doi = {10.1038/S41746-019-0110-4},
timestamp = {Fri, 08 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/npjdm/ZhangYVGCCDJRPC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/CarmodyZVMMR19,
author = {Leigh C. Carmody and
Xingmin Aaron Zhang and
Nicole A. Vasilevsky and
Christopher J. Mungall and
Nicolas Matentzoglu and
Peter N. Robinson},
title = {Medical Action Ontology (MAxO)},
booktitle = {Proceedings of the 10th International Conference on Biomedical Ontology
{(ICBO} 2019), Buffalo, New York, USA, July 30 - August 2, 2019},
pages = {1},
year = {2019},
crossref = {DBLP:conf/icbo/2019},
url = {https://ceur-ws.org/Vol-2931/ICBO\_2019\_paper\_60.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:23 +0100},
biburl = {https://dblp.org/rec/conf/icbo/CarmodyZVMMR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/icbo/2021,
editor = {Janna Hastings and
Adrien Barton},
title = {Proceedings of the International Conference on Biomedical Ontologies
2021 co-located with the Workshop on Ontologies for the Behavioural
and Social Sciences (OntoBess 2021) as part of the Bolzano Summer
of Knowledge {(BOSK} 2021), Bozen-Bolzano, Italy, 16-18 September,
2021},
series = {{CEUR} Workshop Proceedings},
volume = {3073},
publisher = {CEUR-WS.org},
year = {2022},
url = {https://ceur-ws.org/Vol-3073},
urn = {urn:nbn:de:0074-3073-0},
timestamp = {Sat, 20 Apr 2024 03:51:51 +0200},
biburl = {https://dblp.org/rec/conf/icbo/2021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/jowo/2021,
editor = {Emilio M. Sanfilippo and
Oliver Kutz and
Nicolas Troquard and
Torsten Hahmann and
Claudio Masolo and
Robert Hoehndorf and
Randi Vita and
Maria M. Hedblom and
Guendalina Righetti and
Dusan Sormaz and
Walter Terkaj and
Tiago Prince Sales and
Sergio de Cesare and
Frederik Gailly and
Giancarlo Guizzardi and
Mark Lycett and
Chris Partridge and
Oscar Pastor and
Daniel Be{\ss}ler and
Stefano Borgo and
Mohammed Diab and
Aldo Gangemi and
Alberto Olivares Alarcos and
Mihai Pomarlan and
Robert Porzel and
Ludger Jansen and
Mathias Brochhausen and
Daniele Porello and
Pawel Garbacz and
Selja Sepp{\"{a}}l{\"{a}} and
Michael Gr{\"{u}}ninger and
Amanda Vizedom and
Damion M. Dooley and
Robert Warren and
Hande K{\"{u}}{\c{c}}{\"{u}}k{-}McGinty and
Matthew Lange and
Alsayed Algergawy and
Naouel Karam and
Friederike Klan and
Franck Michel and
Ilaria Rosati},
title = {Proceedings of the Joint Ontology Workshops 2021 Episode {VII:} The
Bolzano Summer of Knowledge co-located with the 12th International
Conference on Formal Ontology in Information Systems {(FOIS} 2021),
and the 12th International Conference on Biomedical Ontologies {(ICBO}
2021), Bolzano, Italy, September 11-18, 2021},
series = {{CEUR} Workshop Proceedings},
volume = {2969},
publisher = {CEUR-WS.org},
year = {2021},
url = {https://ceur-ws.org/Vol-2969},
urn = {urn:nbn:de:0074-2969-5},
timestamp = {Sat, 20 Apr 2024 03:51:51 +0200},
biburl = {https://dblp.org/rec/conf/jowo/2021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/icbo/2019,
editor = {Alexander D. Diehl and
William D. Duncan and
Gloria Sanso},
title = {Proceedings of the 10th International Conference on Biomedical Ontology
{(ICBO} 2019), Buffalo, New York, USA, July 30 - August 2, 2019},
series = {{CEUR} Workshop Proceedings},
volume = {2931},
publisher = {CEUR-WS.org},
year = {2021},
url = {https://ceur-ws.org/Vol-2931},
urn = {urn:nbn:de:0074-2931-2},
timestamp = {Sat, 20 Apr 2024 03:51:51 +0200},
biburl = {https://dblp.org/rec/conf/icbo/2019.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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