Stop the war!
Остановите войну!
for scientists:
default search action
BibTeX records: Ivan G. Costa
@article{DBLP:journals/bmcbi/HolscherGKDCBB24, author = {David L. H{\"{o}}lscher and Michael Goedertier and Barbara Mara Klinkhammer and Patrick Droste and Ivan G. Costa and Peter Boor and Roman David B{\"{u}}low}, title = {tRigon: an {R} package and Shiny App for integrative (path-)omics data analysis}, journal = {{BMC} Bioinform.}, volume = {25}, number = {1}, pages = {98}, year = {2024} }
@article{DBLP:journals/bmcbi/LiKTSGGAMZC23, author = {Zhijian Li and Chao{-}Chung Kuo and Fabio Ticconi and Mina Shaigan and Julia Gehrmann and Eduardo G. Gusm{\~{a}}o and Manuel Allhoff and Martin Manolov and Martin Zenke and Ivan G. Costa}, title = {{RGT:} a toolbox for the integrative analysis of high throughput regulatory genomics data}, journal = {{BMC} Bioinform.}, volume = {24}, number = {1}, pages = {79}, year = {2023} }
@article{DBLP:journals/corr/abs-2304-01450, author = {Pablo Andretta Jaskowiak and Ivan Gesteira Costa}, title = {Clustering Validation with The Area Under Precision-Recall Curves}, journal = {CoRR}, volume = {abs/2304.01450}, year = {2023} }
@article{DBLP:journals/corr/abs-2309-07030, author = {James Shiniti Nagai and Ivan G. Costa and Michael T. Schaub}, title = {Optimal transport distances for directed, weighted graphs: a case study with cell-cell communication networks}, journal = {CoRR}, volume = {abs/2309.07030}, year = {2023} }
@article{DBLP:journals/bmcbi/LiBSC22, author = {Ronghui Li and Bella Banjanin and Rebekka K. Schneider and Ivan G. Costa}, title = {Detection of cell markers from single cell RNA-seq with sc2marker}, journal = {{BMC} Bioinform.}, volume = {23}, number = {1}, pages = {276}, year = {2022} }
@article{DBLP:journals/datamine/JaskowiakCC22, author = {Pablo A. Jaskowiak and Ivan G. Costa and Ricardo J. G. B. Campello}, title = {The area under the {ROC} curve as a measure of clustering quality}, journal = {Data Min. Knowl. Discov.}, volume = {36}, number = {3}, pages = {1219--1245}, year = {2022} }
@article{DBLP:journals/bib/KarimBZCRCD21, author = {Md. Rezaul Karim and Oya Beyan and Achille Zappa and Ivan G. Costa and Dietrich Rebholz{-}Schuhmann and Michael Cochez and Stefan Decker}, title = {Deep learning-based clustering approaches for bioinformatics}, journal = {Briefings Bioinform.}, volume = {22}, number = {1}, pages = {393--415}, year = {2021} }
@article{DBLP:journals/bioinformatics/NagaiLSSC21, author = {James Shiniti Nagai and Nils B. Leimk{\"{u}}hler and Michael T. Schaub and Rebekka K. Schneider and Ivan G. Costa}, title = {CrossTalkeR: analysis and visualization of ligand-receptorne tworks}, journal = {Bioinform.}, volume = {37}, number = {22}, pages = {4263--4265}, year = {2021} }
@article{DBLP:journals/corr/abs-2009-02400, author = {Pablo Andretta Jaskowiak and Ivan Gesteira Costa and Ricardo Jos{\'{e}} Gabrielli Barreto Campello}, title = {The Area Under the {ROC} Curve as a Measure of Clustering Quality}, journal = {CoRR}, volume = {abs/2009.02400}, year = {2020} }
@article{DBLP:journals/access/KarimWCDB19, author = {Md. Rezaul Karim and Galih Wicaksono and Ivan G. Costa and Stefan Decker and Oya Beyan}, title = {Prognostically Relevant Subtypes and Survival Prediction for Breast Cancer Based on Multimodal Genomics Data}, journal = {{IEEE} Access}, volume = {7}, pages = {133850--133864}, year = {2019} }
@article{DBLP:journals/ml/LorenaMMCP18, author = {Ana Carolina Lorena and Aron I. Maciel and P{\'{e}}ricles B. C. de Miranda and Ivan G. Costa and Ricardo B. C. Prud{\^{e}}ncio}, title = {Data complexity meta-features for regression problems}, journal = {Mach. Learn.}, volume = {107}, number = {1}, pages = {209--246}, year = {2018} }
@article{DBLP:journals/bmcbi/NascimentoPC16, author = {Andr{\'{e}} C. A. Nascimento and Ricardo B. C. Prud{\^{e}}ncio and Ivan G. Costa}, title = {A multiple kernel learning algorithm for drug-target interaction prediction}, journal = {{BMC} Bioinform.}, volume = {17}, pages = {46}, year = {2016} }
@inproceedings{DBLP:conf/ijcnn/MacielCL16, author = {Aron I. Maciel and Ivan G. Costa and Ana Carolina Lorena}, title = {Measuring the complexity of regression problems}, booktitle = {{IJCNN}}, pages = {1450--1457}, publisher = {{IEEE}}, year = {2016} }
@article{DBLP:journals/bioinformatics/AllhoffSCLZC15, author = {Manuel Allhoff and Kristin Ser{\'{e}} and Heike Chauvistr{\'{e}} and Qiong Lin and Martin Zenke and Ivan G. Costa}, title = {Detecting differential peaks in ChIP-seq signals with {ODIN}}, journal = {Bioinform.}, volume = {31}, number = {6}, pages = {980}, year = {2015} }
@article{DBLP:journals/bmcbi/SoutoJC15, author = {Marc{\'{\i}}lio Carlos Pereira de Souto and Pablo A. Jaskowiak and Ivan G. Costa}, title = {Impact of missing data imputation methods on gene expression clustering and classification}, journal = {{BMC} Bioinform.}, volume = {16}, pages = {64:1--64:9}, year = {2015} }
@article{DBLP:journals/bioinformatics/GusmaoDZC14, author = {Eduardo G. Gusm{\~{a}}o and Christoph Dieterich and Martin Zenke and Ivan G. Costa}, title = {Detection of active transcription factor binding sites with the combination of DNase hypersensitivity and histone modifications}, journal = {Bioinform.}, volume = {30}, number = {22}, pages = {3143--3151}, year = {2014} }
@article{DBLP:journals/bioinformatics/AllhoffSCLZC14, author = {Manuel Allhoff and Kristin Ser{\'{e}} and Heike Chauvistr{\'{e}} and Qiong Lin and Martin Zenke and Ivan G. Costa}, title = {Detecting differential peaks in ChIP-seq signals with {ODIN}}, journal = {Bioinform.}, volume = {30}, number = {24}, pages = {3467--3475}, year = {2014} }
@article{DBLP:journals/bmcbi/JaskowiakCC14, author = {Pablo A. Jaskowiak and Ricardo J. G. B. Campello and Ivan G. Costa}, title = {On the selection of appropriate distances for gene expression data clustering}, journal = {{BMC} Bioinform.}, volume = {15}, number = {{S-2}}, pages = {S2}, year = {2014} }
@article{DBLP:journals/bmcbi/AllhoffSMCRM13, author = {Manuel Allhoff and Alexander Sch{\"{o}}nhuth and Marcel Martin and Ivan G. Costa and Sven Rahmann and Tobias Marschall}, title = {Discovering motifs that induce sequencing errors}, journal = {{BMC} Bioinform.}, volume = {14}, number = {{S-5}}, pages = {S1}, year = {2013} }
@article{DBLP:journals/tcbb/JaskowiakCC13, author = {Pablo A. Jaskowiak and Ricardo J. G. B. Campello and Ivan G. Costa}, title = {Proximity Measures for Clustering Gene Expression Microarray Data: {A} Validation Methodology and a Comparative Analysis}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {10}, number = {4}, pages = {845--857}, year = {2013} }
@inproceedings{DBLP:conf/wob/AraujoSOC13, author = {Gilderlanio S. Ara{\'{u}}jo and Manuela R. B. Souza and Jo{\~{a}}o Ricardo M. Oliveira and Ivan G. Costa}, title = {Random Forest and Gene Networks for Association of SNPs to Alzheimer's Disease}, booktitle = {{BSB}}, series = {Lecture Notes in Computer Science}, volume = {8213}, pages = {104--115}, publisher = {Springer}, year = {2013} }
@article{DBLP:journals/bioinformatics/RegoRCC12, author = {Tha{\'{\i}}s Gaudencio do R{\^{e}}go and Helge G. Roider and Francisco de A. T. de Carvalho and Ivan G. Costa}, title = {Inferring epigenetic and transcriptional regulation during blood cell development with a mixture of sparse linear models}, journal = {Bioinform.}, volume = {28}, number = {18}, pages = {2297--2303}, year = {2012} }
@article{DBLP:journals/bioinformatics/MarschallCCBKSS12, author = {Tobias Marschall and Ivan G. Costa and Stefan Canzar and Markus Bauer and Gunnar W. Klau and Alexander Schliep and Alexander Sch{\"{o}}nhuth}, title = {{CLEVER:} clique-enumerating variant finder}, journal = {Bioinform.}, volume = {28}, number = {22}, pages = {2875--2882}, year = {2012} }
@article{DBLP:journals/ijon/LorenaCSS12, author = {Ana Carolina Lorena and Ivan G. Costa and Newton Spola{\^{o}}r and Marc{\'{\i}}lio Carlos Pereira de Souto}, title = {Analysis of complexity indices for classification problems: Cancer gene expression data}, journal = {Neurocomputing}, volume = {75}, number = {1}, pages = {33--42}, year = {2012} }
@inproceedings{DBLP:conf/sbrn/SoutoCFSBC12, author = {Marcilio C. P. de Souto and Andr{\'{e}} L. V. Coelho and Katti Faceli and Tiemi C. Sakata and Viviane Bonadia and Ivan G. Costa}, title = {A Comparison of External Clustering Evaluation Indices in the Context of Imbalanced Data Sets}, booktitle = {{SBRN}}, pages = {49--54}, publisher = {{IEEE} Computer Society}, year = {2012} }
@inproceedings{DBLP:conf/sbrn/FilhoCOC12, author = {Valmir Mac{\'{a}}rio Filho and Ivan G. Costa and Jo{\~{a}}o F. L. Oliveira and Francisco de A. T. de Carvalho}, title = {Predicting Gene Functions Using Semi-supervised Clustering Algorithms with Objective Function Optimization}, booktitle = {{SBRN}}, pages = {61--66}, publisher = {{IEEE} Computer Society}, year = {2012} }
@inproceedings{DBLP:conf/wob/GusmaoDC12, author = {Eduardo G. Gusm{\~{a}}o and Christoph Dieterich and Ivan G. Costa}, title = {Prediction of Transcription Factor Binding Sites by Integrating DNase Digestion and Histone Modification}, booktitle = {{BSB}}, series = {Lecture Notes in Computer Science}, volume = {7409}, pages = {109--119}, publisher = {Springer}, year = {2012} }
@inproceedings{DBLP:conf/wob/JaskowiakCC12, author = {Pablo A. Jaskowiak and Ricardo J. G. B. Campello and Ivan G. Costa}, title = {Evaluating Correlation Coefficients for Clustering Gene Expression Profiles of Cancer}, booktitle = {{BSB}}, series = {Lecture Notes in Computer Science}, volume = {7409}, pages = {120--131}, publisher = {Springer}, year = {2012} }
@article{DBLP:journals/biodatamining/SchillingCS11, author = {Ruben Schilling and Ivan G. Costa and Alexander Schliep}, title = {pGQL: {A} probabilistic graphical query language for gene expression time courses}, journal = {BioData Min.}, volume = {4}, pages = {9}, year = {2011} }
@article{DBLP:journals/bioinformatics/HafemeisterCSS11, author = {Christoph Hafemeister and Ivan G. Costa and Alexander Sch{\"{o}}nhuth and Alexander Schliep}, title = {Classifying short gene expression time-courses with Bayesian estimation of piecewise constant functions}, journal = {Bioinform.}, volume = {27}, number = {7}, pages = {946--952}, year = {2011} }
@article{DBLP:journals/bioinformatics/RedestigC11, author = {Henning Redestig and Ivan G. Costa}, title = {Detection and interpretation of metabolite-transcript coresponses using combined profiling data}, journal = {Bioinform.}, volume = {27}, number = {13}, pages = {357--365}, year = {2011} }
@article{DBLP:journals/bmcbi/CostaRRC11, author = {Ivan G. Costa and Helge G. Roider and Tha{\'{\i}}s Gaudencio do R{\^{e}}go and Francisco de A. T. de Carvalho}, title = {Predicting gene expression in {T} cell differentiation from histone modifications and transcription factor binding affinities by linear mixture models}, journal = {{BMC} Bioinform.}, volume = {12}, number = {{S-1}}, pages = {S29}, year = {2011} }
@article{DBLP:journals/bmcbi/GeorgiCS10, author = {Benjamin Georgi and Ivan Gesteira Costa and Alexander Schliep}, title = {PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data}, journal = {{BMC} Bioinform.}, volume = {11}, pages = {9}, year = {2010} }
@inproceedings{DBLP:conf/ijcnn/SoutoLSC10, author = {Marc{\'{\i}}lio Carlos Pereira de Souto and Ana Carolina Lorena and Newton Spola{\^{o}}r and Ivan Gesteira Costa}, title = {Complexity measures of supervised classifications tasks: {A} case study for cancer gene expression data}, booktitle = {{IJCNN}}, pages = {1--7}, publisher = {{IEEE}}, year = {2010} }
@inproceedings{DBLP:conf/sbrn/LorenaSCS10, author = {Ana Carolina Lorena and Newton Spola{\^{o}}r and Ivan G. Costa and Marcilio C. P. de Souto}, title = {On the Complexity of Gene Marker Selection}, booktitle = {{SBRN}}, pages = {85--90}, publisher = {{IEEE} Computer Society}, year = {2010} }
@inproceedings{DBLP:conf/wob/RibeiroCC10, author = {Clerton Ribeiro and Francisco de Assis Ten{\'{o}}rio de Carvalho and Ivan G. Costa}, title = {Semi-supervised Approach for Finding Cancer Sub-classes on Gene Expression Data}, booktitle = {{BSB}}, series = {Lecture Notes in Computer Science}, volume = {6268}, pages = {25--34}, publisher = {Springer}, year = {2010} }
@article{DBLP:journals/bioinformatics/CostaSHS09, author = {Ivan G. Costa and Alexander Sch{\"{o}}nhuth and Christoph Hafemeister and Alexander Schliep}, title = {Constrained mixture estimation for analysis and robust classification of clinical time series}, journal = {Bioinform.}, volume = {25}, number = {12}, year = {2009} }
@inproceedings{DBLP:conf/icann/NascimentoPSC09, author = {Andr{\'{e}} C. A. Nascimento and Ricardo Bastos Cavalcante Prud{\^{e}}ncio and Marc{\'{\i}}lio Carlos Pereira de Souto and Ivan G. Costa}, title = {Mining Rules for the Automatic Selection Process of Clustering Methods Applied to Cancer Gene Expression Data}, booktitle = {{ICANN} {(2)}}, series = {Lecture Notes in Computer Science}, volume = {5769}, pages = {20--29}, publisher = {Springer}, year = {2009} }
@inproceedings{DBLP:conf/wob/CostaLPS09, author = {Ivan G. Costa and Ana Carolina Lorena and Liciana R. M. P. y Peres and Marc{\'{\i}}lio Carlos Pereira de Souto}, title = {Using Supervised Complexity Measures in the Analysis of Cancer Gene Expression Data Sets}, booktitle = {{BSB}}, series = {Lecture Notes in Computer Science}, volume = {5676}, pages = {48--59}, publisher = {Springer}, year = {2009} }
@article{DBLP:journals/bmcbi/SoutoCALS08, author = {Marc{\'{\i}}lio Carlos Pereira de Souto and Ivan G. Costa and Daniel S. A. de Araujo and Teresa Bernarda Ludermir and Alexander Schliep}, title = {Clustering cancer gene expression data: a comparative study}, journal = {{BMC} Bioinform.}, volume = {9}, year = {2008} }
@inproceedings{DBLP:conf/his/LorenaCS08, author = {Ana Carolina Lorena and Ivan G. Costa and Marc{\'{\i}}lio Carlos Pereira de Souto}, title = {On the Complexity of Gene Expression Classification Data Sets}, booktitle = {{HIS}}, pages = {825--830}, publisher = {{IEEE} Computer Society}, year = {2008} }
@inproceedings{DBLP:conf/ijcnn/SoutoACSLS08, author = {Marc{\'{\i}}lio Carlos Pereira de Souto and Daniel S. A. de Araujo and Ivan G. Costa and Rodrigo G. F. Soares and Teresa Bernarda Ludermir and Alexander Schliep}, title = {Comparative study on normalization procedures for cluster analysis of gene expression datasets}, booktitle = {{IJCNN}}, pages = {2792--2798}, publisher = {{IEEE}}, year = {2008} }
@inproceedings{DBLP:conf/ijcnn/SoutoPSACLS08, author = {Marc{\'{\i}}lio Carlos Pereira de Souto and Ricardo Bastos Cavalcante Prud{\^{e}}ncio and Rodrigo G. F. Soares and Daniel S. A. de Araujo and Ivan G. Costa and Teresa Bernarda Ludermir and Alexander Schliep}, title = {Ranking and selecting clustering algorithms using a meta-learning approach}, booktitle = {{IJCNN}}, pages = {3729--3735}, publisher = {{IEEE}}, year = {2008} }
@inproceedings{DBLP:conf/ismb/CostaRHS08, author = {Ivan G. Costa and Stefan Roepcke and Christoph Hafemeister and Alexander Schliep}, title = {Inferring differentiation pathways from gene expression}, booktitle = {{ISMB}}, pages = {156--164}, year = {2008} }
@article{DBLP:journals/bmcbi/CostaKOS07, author = {Ivan G. Costa and Roland Krause and Lennart Opitz and Alexander Schliep}, title = {Semi-supervised learning for the identification of syn-expressed genes from fused microarray and \emph{in situ }image data}, journal = {{BMC} Bioinform.}, volume = {8}, number = {{S-10}}, year = {2007} }
@inproceedings{DBLP:conf/wob/CostaSS07, author = {Ivan G. Costa and Marc{\'{\i}}lio Carlos Pereira de Souto and Alexander Schliep}, title = {Validating Gene Clusterings by Selecting Informative Gene Ontology Terms with Mutual Information}, booktitle = {{BSB}}, series = {Lecture Notes in Computer Science}, volume = {4643}, pages = {81--92}, publisher = {Springer}, year = {2007} }
@article{DBLP:journals/bioinformatics/CostaSS05, author = {Ivan G. Costa and Alexander Sch{\"{o}}nhuth and Alexander Schliep}, title = {The Graphical Query Language: a tool for analysis of gene expression time-courses}, journal = {Bioinform.}, volume = {21}, number = {10}, pages = {2544--2545}, year = {2005} }
@article{DBLP:journals/tcbb/SchliepCSS05, author = {Alexander Schliep and Ivan G. Costa and Christine Steinhoff and Alexander Sch{\"{o}}nhuth}, title = {Analyzing Gene Expression Time-Courses}, journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.}, volume = {2}, number = {3}, pages = {179--193}, year = {2005} }
@inproceedings{DBLP:conf/gfkl/CostaS05, author = {Ivan G. Costa and Alexander Schliep}, title = {On External Indices for Mixtures: Validating Mixtures of Genes}, booktitle = {GfKl}, series = {Studies in Classification, Data Analysis, and Knowledge Organization}, pages = {662--669}, publisher = {Springer}, year = {2005} }
@article{DBLP:journals/jifs/CostaCS02, author = {Ivan G. Costa and Francisco de A. T. de Carvalho and Marc{\'{\i}}lio Carlos Pereira de Souto}, title = {Comparative study on proximity indices for cluster analysis of gene expression time series}, journal = {J. Intell. Fuzzy Syst.}, volume = {13}, number = {2-4}, pages = {133--142}, year = {2002} }
@inproceedings{DBLP:conf/sbrn/CostaCS02, author = {Ivan G. Costa and Francisco de A. T. de Carvalho and Marc{\'{\i}}lio Carlos Pereira de Souto}, title = {A Symbolic Approach to Gene Expression Time Series Analysis}, booktitle = {{SBRN}}, pages = {25--30}, publisher = {{IEEE} Computer Society}, year = {2002} }
@inproceedings{DBLP:conf/wob/CostaCS02, author = {Ivan G. Costa and Francisco de A. T. de Carvalho and Marc{\'{\i}}lio Carlos Pereira de Souto}, title = {Stability Evaluation of Clustering Algorithms for Time Series Gene Expression Data}, booktitle = {{WOB}}, pages = {88--90}, year = {2002} }
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.