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ORCIDBibTeX records: Tandy J. Warnow
@article{DBLP:journals/jossw/RamavarapuAPPLWC24,
author = {Vikram Ramavarapu and
Fabio Jose Ayres and
Minhyuk Park and
Vidya Kamath Pailodi and
Jo{\~{a}}o Alfredo Cardoso Lamy and
Tandy J. Warnow and
George Chacko},
title = {{CM++} - {A} Meta-method for Well-Connected Community Detection},
journal = {J. Open Source Softw.},
volume = {9},
number = {94},
pages = {6073},
year = {2024},
url = {https://doi.org/10.21105/joss.06073},
doi = {10.21105/JOSS.06073},
timestamp = {Thu, 29 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jossw/RamavarapuAPPLWC24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recombcg/WarnowTE24,
author = {Tandy J. Warnow and
Yasamin Tabatabaee and
Steven N. Evans},
editor = {C{\'{e}}line Scornavacca and
Maribel Hern{\'{a}}ndez{-}Rosales},
title = {Statistically Consistent Estimation of Rooted and Unrooted Level-1
Phylogenetic Networks from {SNP} Data},
booktitle = {Comparative Genomics - 21st International Conference, {RECOMB-CG}
2024, Boston, MA, USA, April 27-28, 2024, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {14616},
pages = {3--23},
publisher = {Springer},
year = {2024},
url = {https://doi.org/10.1007/978-3-031-58072-7\_1},
doi = {10.1007/978-3-031-58072-7\_1},
timestamp = {Wed, 24 Apr 2024 16:58:28 +0200},
biburl = {https://dblp.org/rec/conf/recombcg/WarnowTE24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/LiuW23,
author = {Baqiao Liu and
Tandy J. Warnow},
title = {Weighted {ASTRID:} fast and accurate species trees from weighted internode
distances},
journal = {Algorithms Mol. Biol.},
volume = {18},
number = {1},
pages = {6},
year = {2023},
url = {https://doi.org/10.1186/s13015-023-00230-6},
doi = {10.1186/S13015-023-00230-6},
timestamp = {Sun, 06 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/almob/LiuW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/ShenLWW23,
author = {Chengze Shen and
Baqiao Liu and
Kelly P. Williams and
Tandy J. Warnow},
title = {{EMMA:} a new method for computing multiple sequence alignments given
a constraint subset alignment},
journal = {Algorithms Mol. Biol.},
volume = {18},
number = {1},
pages = {21},
year = {2023},
url = {https://doi.org/10.1186/s13015-023-00247-x},
doi = {10.1186/S13015-023-00247-X},
timestamp = {Thu, 21 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/ShenLWW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParkICSW23,
author = {Minhyuk Park and
Stefan Ivanovic and
Gillian Chu and
Chengze Shen and
Tandy J. Warnow},
title = {{UPP2:} fast and accurate alignment of datasets with fragmentary sequences},
journal = {Bioinform.},
volume = {39},
number = {1},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad007},
doi = {10.1093/BIOINFORMATICS/BTAD007},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ParkICSW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TabatabaeeZWM23,
author = {Yasamin Tabatabaee and
Chao Zhang and
Tandy J. Warnow and
Siavash Mirarab},
title = {Phylogenomic branch length estimation using quartets},
journal = {Bioinform.},
volume = {39},
number = {Supplement-1},
pages = {185--193},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad221},
doi = {10.1093/BIOINFORMATICS/BTAD221},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TabatabaeeZWM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/TabatabaeeRW23,
author = {Yasamin Tabatabaee and
Sebastien Roch and
Tandy J. Warnow},
title = {{QR-STAR:} {A} Polynomial-Time Statistically Consistent Method for
Rooting Species Trees Under the Coalescent},
journal = {J. Comput. Biol.},
volume = {30},
number = {11},
pages = {1146--1181},
year = {2023},
url = {https://doi.org/10.1089/cmb.2023.0185},
doi = {10.1089/CMB.2023.0185},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/TabatabaeeRW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WedellCW23,
author = {Eleanor Wedell and
Yirong Cai and
Tandy J. Warnow},
title = {{SCAMPP:} Scaling Alignment-Based Phylogenetic Placement to Large
Trees},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {2},
pages = {1417--1430},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3170386},
doi = {10.1109/TCBB.2022.3170386},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WedellCW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ZahariasSW23,
author = {Paul Zaharias and
Vladimir Smirnov and
Tandy J. Warnow},
title = {Large-Scale Multiple Sequence Alignment and the Maximum Weight Trace
Alignment Merging Problem},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {20},
number = {3},
pages = {1700--1712},
year = {2023},
url = {https://doi.org/10.1109/TCBB.2022.3191848},
doi = {10.1109/TCBB.2022.3191848},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ZahariasSW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/complexnetworks/ParkTRLPRKACW23,
author = {Minhyuk Park and
Yasamin Tabatabaee and
Vikram Ramavarapu and
Baqiao Liu and
Vidya Kamath Pailodi and
Rajiv Ramachandran and
Dmitriy Korobskiy and
F{\'{a}}bio Ayres and
George Chacko and
Tandy J. Warnow},
editor = {Hocine Cherifi and
Luis M. Rocha and
Chantal Cherifi and
Murat Donduran},
title = {Identifying Well-Connected Communities in Real-World and Synthetic
Networks},
booktitle = {Complex Networks {\&} Their Applications {XII} - Proceedings of
The Twelfth International Conference on Complex Networks and their
Applications: {COMPLEX} {NETWORKS} 2023, Menton, France, 28-30 November,
2023, Volume 2},
series = {Studies in Computational Intelligence},
volume = {1142},
pages = {3--14},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-53499-7\_1},
doi = {10.1007/978-3-031-53499-7\_1},
timestamp = {Mon, 15 Apr 2024 14:53:10 +0200},
biburl = {https://dblp.org/rec/conf/complexnetworks/ParkTRLPRKACW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/TabatabaeeRW23,
author = {Yasamin Tabatabaee and
S{\'{e}}bastien Roch and
Tandy J. Warnow},
editor = {Haixu Tang},
title = {Statistically Consistent Rooting of Species Trees Under the Multispecies
Coalescent Model},
booktitle = {Research in Computational Molecular Biology - 27th Annual International
Conference, {RECOMB} 2023, Istanbul, Turkey, April 16-19, 2023, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {13976},
pages = {41--57},
publisher = {Springer},
year = {2023},
url = {https://doi.org/10.1007/978-3-031-29119-7\_3},
doi = {10.1007/978-3-031-29119-7\_3},
timestamp = {Wed, 17 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/TabatabaeeRW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ShenLWW23,
author = {Chengze Shen and
Baqiao Liu and
Kelly P. Williams and
Tandy J. Warnow},
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {{EMMA:} Adding Sequences into a Constraint Alignment with High Accuracy
and Scalability (Abstract)},
booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
pages = {2:1--2:2},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://doi.org/10.4230/LIPIcs.WABI.2023.2},
doi = {10.4230/LIPICS.WABI.2023.2},
timestamp = {Tue, 29 Aug 2023 16:25:19 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ShenLWW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/WedellSW23,
author = {Eleanor Wedell and
Chengze Shen and
Tandy J. Warnow},
editor = {Djamal Belazzougui and
A{\"{\i}}da Ouangraoua},
title = {{BATCH-SCAMPP:} Scaling Phylogenetic Placement Methods to Place Many
Sequences (Abstract)},
booktitle = {23rd International Workshop on Algorithms in Bioinformatics, {WABI}
2023, September 4-6, 2023, Houston, TX, {USA}},
series = {LIPIcs},
volume = {273},
pages = {3:1--3:2},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2023},
url = {https://doi.org/10.4230/LIPIcs.WABI.2023.3},
doi = {10.4230/LIPICS.WABI.2023.3},
timestamp = {Tue, 29 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/WedellSW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2303-02813,
author = {Minhyuk Park and
Yasamin Tabatabaee and
Baqiao Liu and
Vidya Kamath Pailodi and
Vikram Ramavarapu and
Rajiv Ramachandran and
Dmitriy Korobskiy and
F{\'{a}}bio Ayres and
George Chacko and
Tandy J. Warnow},
title = {Well-Connected Communities in Real-World Networks},
journal = {CoRR},
volume = {abs/2303.02813},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2303.02813},
doi = {10.48550/ARXIV.2303.02813},
eprinttype = {arXiv},
eprint = {2303.02813},
timestamp = {Tue, 14 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2303-02813.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2309-09386,
author = {James Willson and
Tandy J. Warnow},
title = {Axioms for Distanceless Graph Partitioning},
journal = {CoRR},
volume = {abs/2309.09386},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2309.09386},
doi = {10.48550/ARXIV.2309.09386},
eprinttype = {arXiv},
eprint = {2309.09386},
timestamp = {Fri, 22 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2309-09386.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShenZW22,
author = {Chengze Shen and
Paul Zaharias and
Tandy J. Warnow},
title = {MAGUS+eHMMs: improved multiple sequence alignment accuracy for fragmentary
sequences},
journal = {Bioinform.},
volume = {38},
number = {4},
pages = {918--924},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btab788},
doi = {10.1093/BIOINFORMATICS/BTAB788},
timestamp = {Tue, 28 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShenZW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ZahariasGW22,
author = {Paul Zaharias and
Martin Grosshauser and
Tandy J. Warnow},
title = {Re-evaluating Deep Neural Networks for Phylogeny Estimation: The Issue
of Taxon Sampling},
journal = {J. Comput. Biol.},
volume = {29},
number = {1},
pages = {74--89},
year = {2022},
url = {https://doi.org/10.1089/cmb.2021.0383},
doi = {10.1089/CMB.2021.0383},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/ZahariasGW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LiuW22,
author = {Baqiao Liu and
Tandy J. Warnow},
title = {Scalable Species Tree Inference with External Constraints},
journal = {J. Comput. Biol.},
volume = {29},
number = {7},
pages = {664--678},
year = {2022},
url = {https://doi.org/10.1089/cmb.2021.0543},
doi = {10.1089/CMB.2021.0543},
timestamp = {Mon, 08 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/LiuW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/ShenPW22,
author = {Chengze Shen and
Minhyuk Park and
Tandy J. Warnow},
title = {{WITCH:} Improved Multiple Sequence Alignment Through Weighted Consensus
Hidden Markov Model Alignment},
journal = {J. Comput. Biol.},
volume = {29},
number = {8},
pages = {782--801},
year = {2022},
url = {https://doi.org/10.1089/cmb.2021.0585},
doi = {10.1089/CMB.2021.0585},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/ShenPW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/qss/WedellPKWC22,
author = {Eleanor Wedell and
Minhyuk Park and
Dmitriy Korobskiy and
Tandy J. Warnow and
George Chacko},
title = {Center-periphery structure in research communities},
journal = {Quant. Sci. Stud.},
volume = {3},
number = {1},
pages = {289--314},
year = {2022},
url = {https://doi.org/10.1162/qss\_a\_00184},
doi = {10.1162/QSS\_A\_00184},
timestamp = {Wed, 27 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/qss/WedellPKWC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/qss/JakatdarLWC22,
author = {Akhil Jakatdar and
Baqiao Liu and
Tandy J. Warnow and
George Chacko},
title = {{AOC:} Assembling overlapping communities},
journal = {Quant. Sci. Stud.},
volume = {3},
number = {4},
pages = {1079--1096},
year = {2022},
url = {https://doi.org/10.1162/qss\_a\_00227},
doi = {10.1162/QSS\_A\_00227},
timestamp = {Sat, 25 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/qss/JakatdarLWC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LiuW22,
author = {Baqiao Liu and
Tandy J. Warnow},
editor = {Christina Boucher and
Sven Rahmann},
title = {Fast and Accurate Species Trees from Weighted Internode Distances},
booktitle = {22nd International Workshop on Algorithms in Bioinformatics, {WABI}
2022, September 5-7, 2022, Potsdam, Germany},
series = {LIPIcs},
volume = {242},
pages = {8:1--8:24},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2022},
url = {https://doi.org/10.4230/LIPIcs.WABI.2022.8},
doi = {10.4230/LIPICS.WABI.2022.8},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LiuW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2208-04842,
author = {Akhil Jakatdar and
Baqiao Liu and
Tandy J. Warnow and
George Chacko},
title = {AOC; Assembling Overlapping Communities},
journal = {CoRR},
volume = {abs/2208.04842},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2208.04842},
doi = {10.48550/ARXIV.2208.04842},
eprinttype = {arXiv},
eprint = {2208.04842},
timestamp = {Mon, 29 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2208-04842.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/algorithms/ParkZW21,
author = {Minhyuk Park and
Paul Zaharias and
Tandy J. Warnow},
title = {Disjoint Tree Mergers for Large-Scale Maximum Likelihood Tree Estimation},
journal = {Algorithms},
volume = {14},
number = {5},
pages = {148},
year = {2021},
url = {https://doi.org/10.3390/a14050148},
doi = {10.3390/A14050148},
timestamp = {Tue, 13 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/algorithms/ParkZW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/YuLCMW21,
author = {Xilin Yu and
Thien Le and
Sarah A. Christensen and
Erin K. Molloy and
Tandy J. Warnow},
title = {Using Robinson-Foulds supertrees in divide-and-conquer phylogeny estimation},
journal = {Algorithms Mol. Biol.},
volume = {16},
number = {1},
pages = {12},
year = {2021},
url = {https://doi.org/10.1186/s13015-021-00189-2},
doi = {10.1186/S13015-021-00189-2},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/YuLCMW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmirnovW21,
author = {Vladimir Smirnov and
Tandy J. Warnow},
title = {{MAGUS:} Multiple sequence Alignment using Graph clUStering},
journal = {Bioinform.},
volume = {37},
number = {12},
pages = {1666--1672},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btaa992},
doi = {10.1093/BIOINFORMATICS/BTAA992},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SmirnovW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShahMPW21,
author = {Nidhi Shah and
Erin K. Molloy and
Mihai Pop and
Tandy J. Warnow},
title = {{TIPP2:} metagenomic taxonomic profiling using phylogenetic markers},
journal = {Bioinform.},
volume = {37},
number = {13},
pages = {1839--1845},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab023},
doi = {10.1093/BIOINFORMATICS/BTAB023},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShahMPW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DibaeiniaTW21,
author = {Payam Dibaeinia and
Shayan Tabe{-}Bordbar and
Tandy J. Warnow},
title = {{FASTRAL:} improving scalability of phylogenomic analysis},
journal = {Bioinform.},
volume = {37},
number = {16},
pages = {2317--2324},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab093},
doi = {10.1093/BIOINFORMATICS/BTAB093},
timestamp = {Thu, 16 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DibaeiniaTW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GuptaZW21,
author = {Maya Gupta and
Paul Zaharias and
Tandy J. Warnow},
title = {Accurate large-scale phylogeny-aware alignment using BAli-Phy},
journal = {Bioinform.},
volume = {37},
number = {24},
pages = {4677--4683},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab555},
doi = {10.1093/BIOINFORMATICS/BTAB555},
timestamp = {Sat, 25 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GuptaZW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/qss/Chandrasekharan21,
author = {Shreya Chandrasekharan and
Mariam Zaka and
Stephen A. Gallo and
Wenxi Zhao and
Dmitriy Korobskiy and
Tandy J. Warnow and
George Chacko},
title = {Finding scientific communities in citation graphs: Articles and authors},
journal = {Quant. Sci. Stud.},
volume = {2},
number = {1},
pages = {184--203},
year = {2021},
url = {https://doi.org/10.1162/qss\_a\_00095},
doi = {10.1162/QSS\_A\_00095},
timestamp = {Sun, 16 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/qss/Chandrasekharan21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LeSMZRW21,
author = {Thien Le and
Aaron Sy and
Erin K. Molloy and
Qiuyi Zhang and
Satish Rao and
Tandy J. Warnow},
title = {Using Constrained-INC for Large-Scale Gene Tree and Species Tree Estimation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {2--15},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.2990867},
doi = {10.1109/TCBB.2020.2990867},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LeSMZRW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/PattabiramanW21,
author = {Srilakshmi Pattabiraman and
Tandy J. Warnow},
title = {Profile Hidden Markov Models Are Not Identifiable},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {1},
pages = {162--172},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2019.2933821},
doi = {10.1109/TCBB.2019.2933821},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/PattabiramanW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/WedellCW21,
author = {Eleanor Wedell and
Yirong Cai and
Tandy J. Warnow},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {Scalable and Accurate Phylogenetic Placement Using pplacer-XR},
booktitle = {Algorithms for Computational Biology - 8th International Conference,
AlCoB 2021, Missoula, MT, USA, June 7-11, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12715},
pages = {94--105},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-74432-8\_7},
doi = {10.1007/978-3-030-74432-8\_7},
timestamp = {Tue, 15 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/WedellCW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/WillsonRW21,
author = {James Willson and
Mrinmoy Saha Roddur and
Tandy J. Warnow},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {Comparing Methods for Species Tree Estimation with Gene Duplication
and Loss},
booktitle = {Algorithms for Computational Biology - 8th International Conference,
AlCoB 2021, Missoula, MT, USA, June 7-11, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12715},
pages = {106--117},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-74432-8\_8},
doi = {10.1007/978-3-030-74432-8\_8},
timestamp = {Tue, 15 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/WillsonRW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/ZahariasSW21,
author = {Paul Zaharias and
Vladimir Smirnov and
Tandy J. Warnow},
editor = {Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez and
Travis J. Wheeler},
title = {The Maximum Weight Trace Alignment Merging Problem},
booktitle = {Algorithms for Computational Biology - 8th International Conference,
AlCoB 2021, Missoula, MT, USA, June 7-11, 2021, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12715},
pages = {159--171},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-74432-8\_12},
doi = {10.1007/978-3-030-74432-8\_12},
timestamp = {Tue, 15 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/ZahariasSW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/KoningPW21,
author = {Elizabeth R. Koning and
Malachi Phillips and
Tandy J. Warnow},
editor = {Hongmei Jiang and
Xiuzhen Huang and
Jiajie Zhang},
title = {ppIacerDC: a new scalable phylogenetic placement method},
booktitle = {{BCB} '21: 12th {ACM} International Conference on Bioinformatics,
Computational Biology and Health Informatics, Gainesville, Florida,
USA, August 1-4, 2021},
pages = {3:1--3:9},
publisher = {{ACM}},
year = {2021},
url = {https://doi.org/10.1145/3459930.3469516},
doi = {10.1145/3459930.3469516},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/KoningPW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2111-07410,
author = {Eleanor Wedell and
Minhyuk Park and
Dmitriy Korobskiy and
Tandy J. Warnow and
George Chacko},
title = {Center-Periphery Structure in Communities: Extracellular Vesicles},
journal = {CoRR},
volume = {abs/2111.07410},
year = {2021},
url = {https://arxiv.org/abs/2111.07410},
eprinttype = {arXiv},
eprint = {2111.07410},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2111-07410.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/ChristensenMVYW20,
author = {Sarah A. Christensen and
Erin K. Molloy and
Pranjal Vachaspati and
Ananya Yammanuru and
Tandy J. Warnow},
title = {Non-parametric correction of estimated gene trees using {TRACTION}},
journal = {Algorithms Mol. Biol.},
volume = {15},
number = {1},
pages = {1},
year = {2020},
url = {https://doi.org/10.1186/s13015-019-0161-8},
doi = {10.1186/S13015-019-0161-8},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/ChristensenMVYW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MolloyW20,
author = {Erin K. Molloy and
Tandy J. Warnow},
title = {FastMulRFS: fast and accurate species tree estimation under generic
gene duplication and loss models},
journal = {Bioinform.},
volume = {36},
number = {Supplement-1},
pages = {i57--i65},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btaa444},
doi = {10.1093/BIOINFORMATICS/BTAA444},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MolloyW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/qss/BradleyDDKLLWC20,
author = {James R. Bradley and
Sitaram Devarakonda and
Avon Davey and
Dmitriy Korobskiy and
Siyu Liu and
Djamil Lakhdar{-}Hamina and
Tandy J. Warnow and
George Chacko},
title = {Co-citations in context: Disciplinary heterogeneity is relevant},
journal = {Quant. Sci. Stud.},
volume = {1},
number = {1},
pages = {264--276},
year = {2020},
url = {https://doi.org/10.1162/qss\_a\_00007},
doi = {10.1162/QSS\_A\_00007},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/qss/BradleyDDKLLWC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/qss/DevarakondaBKWC20,
author = {Sitaram Devarakonda and
James R. Bradley and
Dmitriy Korobskiy and
Tandy J. Warnow and
George Chacko},
title = {Frequently cocited publications: Features and kinetics},
journal = {Quant. Sci. Stud.},
volume = {1},
number = {3},
pages = {1223--1241},
year = {2020},
url = {https://doi.org/10.1162/qss\_a\_00075},
doi = {10.1162/QSS\_A\_00075},
timestamp = {Wed, 07 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/qss/DevarakondaBKWC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/scientometrics/DevarakondaKWC20,
author = {Sitaram Devarakonda and
Dmitriy Korobskiy and
Tandy J. Warnow and
George Chacko},
title = {Viewing computer science through citation analysis: Salton and Bergmark
Redux},
journal = {Scientometrics},
volume = {125},
number = {1},
pages = {271--287},
year = {2020},
url = {https://doi.org/10.1007/s11192-020-03624-0},
doi = {10.1007/S11192-020-03624-0},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/scientometrics/DevarakondaKWC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LegriedMWR20,
author = {Brandon Legried and
Erin K. Molloy and
Tandy J. Warnow and
S{\'{e}}bastien Roch},
editor = {Russell Schwartz},
title = {Polynomial-Time Statistical Estimation of Species Trees Under Gene
Duplication and Loss},
booktitle = {Research in Computational Molecular Biology - 24th Annual International
Conference, {RECOMB} 2020, Padua, Italy, May 10-13, 2020, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12074},
pages = {120--135},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-45257-5\_8},
doi = {10.1007/978-3-030-45257-5\_8},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LegriedMWR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/YuLCMW20,
author = {Xilin Yu and
Thien Le and
Sarah A. Christensen and
Erin K. Molloy and
Tandy J. Warnow},
editor = {Carl Kingsford and
Nadia Pisanti},
title = {Advancing Divide-And-Conquer Phylogeny Estimation Using Robinson-Foulds
Supertrees},
booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI}
2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)},
series = {LIPIcs},
volume = {172},
pages = {15:1--15:17},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2020},
url = {https://doi.org/10.4230/LIPIcs.WABI.2020.15},
doi = {10.4230/LIPICS.WABI.2020.15},
timestamp = {Thu, 16 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/YuLCMW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2005-04793,
author = {Sitaram Devarakonda and
James R. Bradley and
Dmitriy Korobskiy and
Tandy J. Warnow and
George Chacko},
title = {Frequently Co-cited Publications: Features and Kinetics},
journal = {CoRR},
volume = {abs/2005.04793},
year = {2020},
url = {https://arxiv.org/abs/2005.04793},
eprinttype = {arXiv},
eprint = {2005.04793},
timestamp = {Wed, 24 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2005-04793.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2007-14452,
author = {Shreya Chandrasekharan and
Mariam Zaka and
Stephen A. Gallo and
Tandy J. Warnow and
George Chacko},
title = {Finding Scientific Communities In Citation Graphs: Convergent Clustering},
journal = {CoRR},
volume = {abs/2007.14452},
year = {2020},
url = {https://arxiv.org/abs/2007.14452},
eprinttype = {arXiv},
eprint = {2007.14452},
timestamp = {Wed, 05 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2007-14452.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/ZhangRW19,
author = {Qiuyi Zhang and
Satish Rao and
Tandy J. Warnow},
title = {Constrained incremental tree building: new absolute fast converging
phylogeny estimation methods with improved scalability and accuracy},
journal = {Algorithms Mol. Biol.},
volume = {14},
number = {1},
pages = {2:1--2:12},
year = {2019},
url = {https://doi.org/10.1186/s13015-019-0136-9},
doi = {10.1186/S13015-019-0136-9},
timestamp = {Fri, 29 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/almob/ZhangRW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/MolloyW19,
author = {Erin K. Molloy and
Tandy J. Warnow},
title = {Statistically consistent divide-and-conquer pipelines for phylogeny
estimation using NJMerge},
journal = {Algorithms Mol. Biol.},
volume = {14},
number = {1},
pages = {14:1--14:17},
year = {2019},
url = {https://doi.org/10.1186/s13015-019-0151-x},
doi = {10.1186/S13015-019-0151-X},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/almob/MolloyW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShahNWP19,
author = {Nidhi Shah and
Michael G. Nute and
Tandy J. Warnow and
Mihai Pop},
title = {Misunderstood parameter of {NCBI} {BLAST} impacts the correctness
of bioinformatics workflows},
journal = {Bioinform.},
volume = {35},
number = {9},
pages = {1613--1614},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty833},
doi = {10.1093/BIOINFORMATICS/BTY833},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShahNWP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MolloyW19,
author = {Erin K. Molloy and
Tandy J. Warnow},
title = {TreeMerge: a new method for improving the scalability of species tree
estimation methods},
journal = {Bioinform.},
volume = {35},
number = {14},
pages = {i417--i426},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz344},
doi = {10.1093/BIOINFORMATICS/BTZ344},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MolloyW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/Warnow19,
author = {Tandy J. Warnow},
editor = {Ian H. Holmes and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {New Divide-and-Conquer Techniques for Large-Scale Phylogenetic Estimation},
booktitle = {Algorithms for Computational Biology - 6th International Conference,
AlCoB 2019, Berkeley, CA, USA, May 28-30, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11488},
pages = {3--21},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-18174-1\_1},
doi = {10.1007/978-3-030-18174-1\_1},
timestamp = {Tue, 09 Nov 2021 09:18:33 +0100},
biburl = {https://dblp.org/rec/conf/alcob/Warnow19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/LeSMZRW19,
author = {Thien Le and
Aaron Sy and
Erin K. Molloy and
Qiuyi (Richard) Zhang and
Satish Rao and
Tandy J. Warnow},
editor = {Ian H. Holmes and
Carlos Mart{\'{\i}}n{-}Vide and
Miguel A. Vega{-}Rodr{\'{\i}}guez},
title = {Using {INC} Within Divide-and-Conquer Phylogeny Estimation},
booktitle = {Algorithms for Computational Biology - 6th International Conference,
AlCoB 2019, Berkeley, CA, USA, May 28-30, 2019, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11488},
pages = {167--178},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-18174-1\_12},
doi = {10.1007/978-3-030-18174-1\_12},
timestamp = {Fri, 31 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/alcob/LeSMZRW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ChristensenMVW19,
author = {Sarah A. Christensen and
Erin K. Molloy and
Pranjal Vachaspati and
Tandy J. Warnow},
editor = {Katharina T. Huber and
Dan Gusfield},
title = {{TRACTION:} Fast Non-Parametric Improvement of Estimated Gene Trees},
booktitle = {19th International Workshop on Algorithms in Bioinformatics, {WABI}
2019, September 8-10, 2019, Niagara Falls, NY, {USA}},
series = {LIPIcs},
volume = {143},
pages = {4:1--4:16},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2019},
url = {https://doi.org/10.4230/LIPIcs.WABI.2019.4},
doi = {10.4230/LIPICS.WABI.2019.4},
timestamp = {Mon, 12 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ChristensenMVW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1909-08738,
author = {James R. Bradley and
Sitaram Devarakonda and
Avon Davey and
Dmitriy Korobskiy and
Siyu Liu and
Djamil Lakhdar{-}Hamina and
Tandy J. Warnow and
George Chacko},
title = {Co-citations in context: disciplinary heterogeneity is relevant},
journal = {CoRR},
volume = {abs/1909.08738},
year = {2019},
url = {http://arxiv.org/abs/1909.08738},
eprinttype = {arXiv},
eprint = {1909.08738},
timestamp = {Fri, 19 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1909-08738.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1912-10521,
author = {Sitaram Devarakonda and
Dmitriy Korobskiy and
Tandy J. Warnow and
George Chacko},
title = {Viewing Computer Science through Citation Analysis; Salton and Bergmark
Redux},
journal = {CoRR},
volume = {abs/1912.10521},
year = {2019},
url = {http://arxiv.org/abs/1912.10521},
eprinttype = {arXiv},
eprint = {1912.10521},
timestamp = {Sat, 23 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1912-10521.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/BayzidW18,
author = {Md. Shamsuzzoha Bayzid and
Tandy J. Warnow},
title = {Gene tree parsimony for incomplete gene trees: addressing true biological
loss},
journal = {Algorithms Mol. Biol.},
volume = {13},
number = {1},
pages = {1:1--1:12},
year = {2018},
url = {https://doi.org/10.1186/s13015-017-0120-1},
doi = {10.1186/S13015-017-0120-1},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/BayzidW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/ChristensenMVW18,
author = {Sarah A. Christensen and
Erin K. Molloy and
Pranjal Vachaspati and
Tandy J. Warnow},
title = {{OCTAL:} Optimal Completion of gene trees in polynomial time},
journal = {Algorithms Mol. Biol.},
volume = {13},
number = {1},
pages = {6:1--6:18},
year = {2018},
url = {https://doi.org/10.1186/s13015-018-0124-5},
doi = {10.1186/S13015-018-0124-5},
timestamp = {Mon, 12 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/almob/ChristensenMVW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CollinsW18,
author = {Kodi Collins and
Tandy J. Warnow},
title = {{PASTA} for proteins},
journal = {Bioinform.},
volume = {34},
number = {22},
pages = {3939--3941},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty495},
doi = {10.1093/BIOINFORMATICS/BTY495},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CollinsW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/MulderSBBGMPRRS18,
author = {Nicola J. Mulder and
Russell Schwartz and
Michelle D. Brazas and
Cath Brooksbank and
Bruno A. Ga{\"{e}}ta and
Sarah L. Morgan and
Mark A. Pauley and
Anne G. Rosenwald and
Gabriella Rustici and
Michael L. Sierk and
Tandy J. Warnow and
Lonnie R. Welch},
title = {The development and application of bioinformatics core competencies
to improve bioinformatics training and education},
journal = {PLoS Comput. Biol.},
volume = {14},
number = {2},
year = {2018},
url = {https://doi.org/10.1371/journal.pcbi.1005772},
doi = {10.1371/JOURNAL.PCBI.1005772},
timestamp = {Sat, 25 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/MulderSBBGMPRRS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/PattabiramanW18,
author = {Srilakshmi Pattabiraman and
Tandy J. Warnow},
editor = {Amarda Shehu and
Cathy H. Wu and
Christina Boucher and
Jing Li and
Hongfang Liu and
Mihai Pop},
title = {Are Profile Hidden Markov Models Identifiable?},
booktitle = {Proceedings of the 2018 {ACM} International Conference on Bioinformatics,
Computational Biology, and Health Informatics, {BCB} 2018, Washington,
DC, USA, August 29 - September 01, 2018},
pages = {448--456},
publisher = {{ACM}},
year = {2018},
url = {https://doi.org/10.1145/3233547.3233563},
doi = {10.1145/3233547.3233563},
timestamp = {Wed, 21 Nov 2018 12:44:25 +0100},
biburl = {https://dblp.org/rec/conf/bcb/PattabiramanW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MolloyW18,
author = {Erin K. Molloy and
Tandy J. Warnow},
editor = {Mathieu Blanchette and
A{\"{\i}}da Ouangraoua},
title = {NJMerge: {A} Generic Technique for Scaling Phylogeny Estimation Methods
and Its Application to Species Trees},
booktitle = {Comparative Genomics - 16th International Conference, {RECOMB-CG}
2018, Magog-Orford, QC, Canada, October 9-12, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11183},
pages = {260--276},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-00834-5\_15},
doi = {10.1007/978-3-030-00834-5\_15},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MolloyW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ZhangRW18,
author = {Qiuyi (Richard) Zhang and
Satish Rao and
Tandy J. Warnow},
editor = {Laxmi Parida and
Esko Ukkonen},
title = {New Absolute Fast Converging Phylogeny Estimation Methods with Improved
Scalability and Accuracy},
booktitle = {18th International Workshop on Algorithms in Bioinformatics, {WABI}
2018, August 20-22, 2018, Helsinki, Finland},
series = {LIPIcs},
volume = {113},
pages = {8:1--8:12},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2018},
url = {https://doi.org/10.4230/LIPIcs.WABI.2018.8},
doi = {10.4230/LIPICS.WABI.2018.8},
timestamp = {Tue, 11 Feb 2020 15:52:14 +0100},
biburl = {https://dblp.org/rec/conf/wabi/ZhangRW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1803-02800,
author = {Sebastien Roch and
Michael Nute and
Tandy J. Warnow},
title = {Long-branch attraction in species tree estimation: inconsistency of
partitioned likelihood and topology-based summary methods},
journal = {CoRR},
volume = {abs/1803.02800},
year = {2018},
url = {http://arxiv.org/abs/1803.02800},
eprinttype = {arXiv},
eprint = {1803.02800},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1803-02800.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VachaspatiW17,
author = {Pranjal Vachaspati and
Tandy J. Warnow},
title = {FastRFS: fast and accurate Robinson-Foulds Supertrees using constrained
exact optimization},
journal = {Bioinform.},
volume = {33},
number = {5},
pages = {631--639},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btw600},
doi = {10.1093/BIOINFORMATICS/BTW600},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VachaspatiW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/Warnow17,
author = {Tandy J. Warnow},
editor = {Nurit Haspel and
Lenore J. Cowen and
Amarda Shehu and
Tamer Kahveci and
Giuseppe Pozzi},
title = {Genome-scale Estimation of the Tree of Life},
booktitle = {Proceedings of the 8th {ACM} International Conference on Bioinformatics,
Computational Biology, and Health Informatics, {BCB} 2017, Boston,
MA, USA, August 20-23, 2017},
pages = {634},
publisher = {{ACM}},
year = {2017},
url = {https://doi.org/10.1145/3107411.3107463},
doi = {10.1145/3107411.3107463},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/Warnow17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/Warnow17,
author = {Tandy J. Warnow},
title = {Computational Challenges in Constructing the Tree of Life},
booktitle = {2017 {IEEE} International Parallel and Distributed Processing Symposium,
{IPDPS} 2017, Orlando, FL, USA, May 29 - June 2, 2017},
pages = {1},
publisher = {{IEEE} Computer Society},
year = {2017},
url = {https://doi.org/10.1109/IPDPS.2017.128},
doi = {10.1109/IPDPS.2017.128},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/Warnow17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/VachaspatiW17,
author = {Pranjal Vachaspati and
Tandy J. Warnow},
editor = {Joao Meidanis and
Luay Nakhleh},
title = {Enhancing Searches for Optimal Trees Using {SIESTA}},
booktitle = {Comparative Genomics - 15th International Workshop, {RECOMB} {CG}
2017, Barcelona, Spain, October 4-6, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10562},
pages = {232--255},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67979-2\_13},
doi = {10.1007/978-3-319-67979-2\_13},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/VachaspatiW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/BayzidW17,
author = {Md. Shamsuzzoha Bayzid and
Tandy J. Warnow},
editor = {Russell Schwartz and
Knut Reinert},
title = {Gene Tree Parsimony for Incomplete Gene Trees},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {2:1--2:13},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.2},
doi = {10.4230/LIPICS.WABI.2017.2},
timestamp = {Tue, 11 Feb 2020 15:52:14 +0100},
biburl = {https://dblp.org/rec/conf/wabi/BayzidW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/ChristensenMVW17,
author = {Sarah A. Christensen and
Erin K. Molloy and
Pranjal Vachaspati and
Tandy J. Warnow},
editor = {Russell Schwartz and
Knut Reinert},
title = {Optimal Completion of Incomplete Gene Trees in Polynomial Time Using
{OCTAL}},
booktitle = {17th International Workshop on Algorithms in Bioinformatics, {WABI}
2017, August 21-23, 2017, Boston, MA, {USA}},
series = {LIPIcs},
volume = {88},
pages = {27:1--27:14},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2017},
url = {https://doi.org/10.4230/LIPIcs.WABI.2017.27},
doi = {10.4230/LIPICS.WABI.2017.27},
timestamp = {Mon, 12 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/ChristensenMVW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/UricchioWR16,
author = {Lawrence H. Uricchio and
Tandy J. Warnow and
Noah A. Rosenberg},
title = {An analytical upper bound on the number of loci required for all splits
of a species tree to appear in a set of gene trees},
journal = {{BMC} Bioinform.},
volume = {17},
number = {{S-14}},
pages = {241--250},
year = {2016},
url = {https://doi.org/10.1186/s12859-016-1266-4},
doi = {10.1186/S12859-016-1266-4},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/UricchioWR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/WelchBSMGKMMMPP16,
author = {Lonnie R. Welch and
Cath Brooksbank and
Russell Schwartz and
Sarah L. Morgan and
Bruno A. Ga{\"{e}}ta and
Alastair M. Kilpatrick and
Daniel Mietchen and
Benjamin L. Moore and
Nicola J. Mulder and
Mark A. Pauley and
William R. Pearson and
Predrag Radivojac and
Naomi Rosenberg and
Anne G. Rosenwald and
Gabriella Rustici and
Tandy J. Warnow},
title = {Applying, Evaluating and Refining Bioinformatics Core Competencies
(An Update from the Curriculum Task Force of ISCB's Education Committee)},
journal = {PLoS Comput. Biol.},
volume = {12},
number = {5},
year = {2016},
url = {https://doi.org/10.1371/journal.pcbi.1004943},
doi = {10.1371/JOURNAL.PCBI.1004943},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/WelchBSMGKMMMPP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dagstuhl-reports/MyersPRW16,
author = {Gene Myers and
Mihai Pop and
Knut Reinert and
Tandy J. Warnow},
title = {Next Generation Sequencing (Dagstuhl Seminar 16351)},
journal = {Dagstuhl Reports},
volume = {6},
number = {8},
pages = {91--130},
year = {2016},
url = {https://doi.org/10.4230/DagRep.6.8.91},
doi = {10.4230/DAGREP.6.8.91},
timestamp = {Sat, 16 Sep 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/dagstuhl-reports/MyersPRW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MirarabW15,
author = {Siavash Mirarab and
Tandy J. Warnow},
title = {{ASTRAL-II:} coalescent-based species tree estimation with many hundreds
of taxa and thousands of genes},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {44--52},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv234},
doi = {10.1093/BIOINFORMATICS/BTV234},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MirarabW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/MirarabNGWKW15,
author = {Siavash Mirarab and
Nam Nguyen and
Sheng Guo and
Li{-}San Wang and
Junhyong Kim and
Tandy J. Warnow},
title = {{PASTA:} Ultra-Large Multiple Sequence Alignment for Nucleotide and
Amino-Acid Sequences},
journal = {J. Comput. Biol.},
volume = {22},
number = {5},
pages = {377--386},
year = {2015},
url = {https://doi.org/10.1089/cmb.2014.0156},
doi = {10.1089/CMB.2014.0156},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/MirarabNGWKW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/NguyenMKW15,
author = {Nam{-}phuong Nguyen and
Siavash Mirarab and
Keerthana Kumar and
Tandy J. Warnow},
editor = {Teresa M. Przytycka},
title = {Ultra-Large Alignments Using Ensembles of Hidden Markov Models},
booktitle = {Research in Computational Molecular Biology - 19th Annual International
Conference, {RECOMB} 2015, Warsaw, Poland, April 12-15, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9029},
pages = {259--260},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-16706-0\_26},
doi = {10.1007/978-3-319-16706-0\_26},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/NguyenMKW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/NguyenMKW15,
author = {Nam{-}phuong Nguyen and
Siavash Mirarab and
Keerthana Kumar and
Tandy J. Warnow},
title = {Ultra-large alignments using Phylogeny-aware Profiles},
journal = {CoRR},
volume = {abs/1504.01142},
year = {2015},
url = {http://arxiv.org/abs/1504.01142},
eprinttype = {arXiv},
eprint = {1504.01142},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/NguyenMKW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MirarabRBZSW14,
author = {Siavash Mirarab and
Rezwana Reaz and
Md. Shamsuzzoha Bayzid and
Th{\'{e}}o Zimmermann and
M. Shel Swenson and
Tandy J. Warnow},
title = {{ASTRAL:} genome-scale coalescent-based species tree estimation},
journal = {Bioinform.},
volume = {30},
number = {17},
pages = {541--548},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu462},
doi = {10.1093/BIOINFORMATICS/BTU462},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MirarabRBZSW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NguyenMLPW14,
author = {Nam{-}phuong Nguyen and
Siavash Mirarab and
Bo Liu and
Mihai Pop and
Tandy J. Warnow},
title = {{TIPP:} taxonomic identification and phylogenetic profiling},
journal = {Bioinform.},
volume = {30},
number = {24},
pages = {3548--3555},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu721},
doi = {10.1093/BIOINFORMATICS/BTU721},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NguyenMLPW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/MirarabNW14,
author = {Siavash Mirarab and
Nam{-}phuong Nguyen and
Tandy J. Warnow},
editor = {Roded Sharan},
title = {{PASTA:} Ultra-Large Multiple Sequence Alignment},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {177--191},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_15},
doi = {10.1007/978-3-319-05269-4\_15},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/MirarabNW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BayzidW13,
author = {Md. Shamsuzzoha Bayzid and
Tandy J. Warnow},
title = {Naive binning improves phylogenomic analyses},
journal = {Bioinform.},
volume = {29},
number = {18},
pages = {2277--2284},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt394},
doi = {10.1093/BIOINFORMATICS/BTT394},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BayzidW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/NakhlehRW13,
author = {Luay Nakhleh and
Noah A. Rosenberg and
Tandy J. Warnow},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Session introduction},
booktitle = {Biocomputing 2013: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2013},
pages = {247--249},
publisher = {World Scientific Publishing},
year = {2013},
url = {http://psb.stanford.edu/psb-online/proceedings/psb13/intro-ppg.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/NakhlehRW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/BayzidMW13,
author = {Md. Shamsuzzoha Bayzid and
Siavash Mirarab and
Tandy J. Warnow},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Inferring Optimal Species Trees Under Gene Duplication and Loss},
booktitle = {Biocomputing 2013: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2013},
pages = {250--261},
publisher = {World Scientific Publishing},
year = {2013},
url = {http://psb.stanford.edu/psb-online/proceedings/psb13/bayzid.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/BayzidMW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/daglib/p/Warnow13,
author = {Tandy J. Warnow},
editor = {C{\'{e}}dric Chauve and
Nadia El{-}Mabrouk and
Eric Tannier},
title = {Large-Scale Multiple Sequence Alignment and Phylogeny Estimation},
booktitle = {Models and Algorithms for Genome Evolution},
pages = {85--146},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-1-4471-5298-9\_6},
doi = {10.1007/978-1-4471-5298-9\_6},
timestamp = {Tue, 16 May 2017 14:01:34 +0200},
biburl = {https://dblp.org/rec/books/daglib/p/Warnow13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/NguyenMW12,
author = {Nam{-}phuong Nguyen and
Siavash Mirarab and
Tandy J. Warnow},
title = {{MRL} and SuperFine+MRL: new supertree methods},
journal = {Algorithms Mol. Biol.},
volume = {7},
pages = {3},
year = {2012},
url = {https://doi.org/10.1186/1748-7188-7-3},
doi = {10.1186/1748-7188-7-3},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/NguyenMW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NelesenLWLW12,
author = {Serita M. Nelesen and
Kevin Liu and
Li{-}San Wang and
C. Randal Linder and
Tandy J. Warnow},
title = {{DACTAL:} divide-and-conquer trees (almost) without alignments},
journal = {Bioinform.},
volume = {28},
number = {12},
pages = {274--282},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts218},
doi = {10.1093/BIOINFORMATICS/BTS218},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NelesenLWLW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BayzidW12,
author = {Md. Shamsuzzoha Bayzid and
Tandy J. Warnow},
title = {Estimating Optimal Species Trees from Incomplete Gene Trees Under
Deep Coalescence},
journal = {J. Comput. Biol.},
volume = {19},
number = {6},
pages = {591--605},
year = {2012},
url = {https://doi.org/10.1089/cmb.2012.0037},
doi = {10.1089/CMB.2012.0037},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BayzidW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/MirarabNW12,
author = {Siavash Mirarab and
Nam Nguyen and
Tandy J. Warnow},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {{SEPP:} SATe -Enabled Phylogenetic Placement},
booktitle = {Biocomputing 2012: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2012},
pages = {247--258},
publisher = {World Scientific Publishing},
year = {2012},
url = {http://psb.stanford.edu/psb-online/proceedings/psb12/mirarab.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/MirarabNW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sac/NevesWSP12,
author = {Diogo Telmo Neves and
Tandy J. Warnow and
Jo{\~{a}}o Lu{\'{\i}}s Sobral and
Keshav Pingali},
editor = {Sascha Ossowski and
Paola Lecca},
title = {Parallelizing SuperFine},
booktitle = {Proceedings of the {ACM} Symposium on Applied Computing, {SAC} 2012,
Riva, Trento, Italy, March 26-30, 2012},
pages = {1361--1367},
publisher = {{ACM}},
year = {2012},
url = {https://doi.org/10.1145/2245276.2231992},
doi = {10.1145/2245276.2231992},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sac/NevesWSP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/SwensonSLW11,
author = {M. Shel Swenson and
Rahul Suri and
C. Randal Linder and
Tandy J. Warnow},
title = {An experimental study of Quartets MaxCut and other supertree methods},
journal = {Algorithms Mol. Biol.},
volume = {6},
pages = {7},
year = {2011},
url = {https://doi.org/10.1186/1748-7188-6-7},
doi = {10.1186/1748-7188-6-7},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/SwensonSLW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MirarabW11,
author = {Siavash Mirarab and
Tandy J. Warnow},
title = {{FASTSP:} linear time calculation of alignment accuracy},
journal = {Bioinform.},
volume = {27},
number = {23},
pages = {3250--3258},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr553},
doi = {10.1093/BIOINFORMATICS/BTR553},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MirarabW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YangW11,
author = {Jimmy Yang and
Tandy J. Warnow},
title = {Fast and accurate methods for phylogenomic analyses},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-9}},
pages = {S4},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S9-S4},
doi = {10.1186/1471-2105-12-S9-S4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YangW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/YuWN11,
author = {Yun Yu and
Tandy J. Warnow and
Luay Nakhleh},
title = {Algorithms for MDC-Based Multi-Locus Phylogeny Inference: Beyond Rooted
Binary Gene Trees on Single Alleles},
journal = {J. Comput. Biol.},
volume = {18},
number = {11},
pages = {1543--1559},
year = {2011},
url = {https://doi.org/10.1089/cmb.2011.0174},
doi = {10.1089/CMB.2011.0174},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/YuWN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/WangLWBdW11,
author = {Li{-}San Wang and
James H. Leebens{-}Mack and
P. Kerr Wall and
Kevin Beckmann and
Claude W. dePamphilis and
Tandy J. Warnow},
title = {The Impact of Multiple Protein Sequence Alignment on Phylogenetic
Estimation},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {8},
number = {4},
pages = {1108--1119},
year = {2011},
url = {https://doi.org/10.1109/TCBB.2009.68},
doi = {10.1109/TCBB.2009.68},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/WangLWBdW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/YuWN11,
author = {Yun Yu and
Tandy J. Warnow and
Luay Nakhleh},
editor = {Vineet Bafna and
S{\"{u}}leyman Cenk Sahinalp},
title = {Algorithms for MDC-Based Multi-locus Phylogeny Inference},
booktitle = {Research in Computational Molecular Biology - 15th Annual International
Conference, {RECOMB} 2011, Vancouver, BC, Canada, March 28-31, 2011.
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6577},
pages = {531--545},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-20036-6\_47},
doi = {10.1007/978-3-642-20036-6\_47},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/YuWN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/SwensonBWL10,
author = {M. Shel Swenson and
Fran{\c{c}}ois Barban{\c{c}}on and
Tandy J. Warnow and
C. Randal Linder},
title = {A simulation study comparing supertree and combined analysis methods
using SMIDGen},
journal = {Algorithms Mol. Biol.},
volume = {5},
pages = {8},
year = {2010},
url = {https://doi.org/10.1186/1748-7188-5-8},
doi = {10.1186/1748-7188-5-8},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/SwensonBWL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SwensonSLW10,
author = {M. Shel Swenson and
Rahul Suri and
C. Randal Linder and
Tandy J. Warnow},
editor = {Vincent Moulton and
Mona Singh},
title = {An Experimental Study of Quartets MaxCut and Other Supertree Methods},
booktitle = {Algorithms in Bioinformatics, 10th International Workshop, {WABI}
2010, Liverpool, UK, September 6-8, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6293},
pages = {288--299},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-15294-8\_24},
doi = {10.1007/978-3-642-15294-8\_24},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SwensonSLW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LiuNRLW09,
author = {Kevin Liu and
Serita M. Nelesen and
Sindhu Raghavan and
C. Randal Linder and
Tandy J. Warnow},
title = {Barking Up The Wrong Treelength: The Impact of Gap Penalty on Alignment
and Tree Accuracy},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {6},
number = {1},
pages = {7--21},
year = {2009},
url = {https://doi.org/10.1109/TCBB.2008.63},
doi = {10.1109/TCBB.2008.63},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LiuNRLW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SwensonBLW09,
author = {M. Shel Swenson and
Fran{\c{c}}ois Barban{\c{c}}on and
C. Randal Linder and
Tandy J. Warnow},
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {A Simulation Study Comparing Supertree and Combined Analysis Methods
Using SMIDGen},
booktitle = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
pages = {333--344},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6\_28},
doi = {10.1007/978-3-642-04241-6\_28},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SwensonBLW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wabi/2009,
editor = {Steven Salzberg and
Tandy J. Warnow},
title = {Algorithms in Bioinformatics, 9th International Workshop, {WABI} 2009,
Philadelphia, PA, USA, September 12-13, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5724},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04241-6},
doi = {10.1007/978-3-642-04241-6},
isbn = {978-3-642-04240-9},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/2009.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SnirWR08,
author = {Sagi Snir and
Tandy J. Warnow and
Satish Rao},
title = {Short Quartet Puzzling: {A} New Quartet-Based Phylogeny Reconstruction
Algorithm},
journal = {J. Comput. Biol.},
volume = {15},
number = {1},
pages = {91--103},
year = {2008},
url = {https://doi.org/10.1089/cmb.2007.0103},
doi = {10.1089/CMB.2007.0103},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/SnirWR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/llc/NicholsW08,
author = {Johanna Nichols and
Tandy J. Warnow},
title = {Tutorial on Computational Linguistic Phylogeny},
journal = {Lang. Linguistics Compass},
volume = {2},
number = {5},
pages = {760--820},
year = {2008},
url = {https://doi.org/10.1111/j.1749-818X.2008.00082.x},
doi = {10.1111/J.1749-818X.2008.00082.X},
timestamp = {Fri, 05 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/llc/NicholsW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/BrudnoMLW08,
author = {Michael Brudno and
Bernard M. E. Moret and
C. Randal Linder and
Tandy J. Warnow},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Session Introduction},
booktitle = {Biocomputing 2008, Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, 4-8 January 2008},
pages = {1--2},
publisher = {World Scientific},
year = {2008},
url = {http://psb.stanford.edu/psb-online/proceedings/psb08/gap.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/BrudnoMLW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/NelesenLZLW08,
author = {Serita M. Nelesen and
Kevin Liu and
D. Zhao and
C. Randal Linder and
Tandy J. Warnow},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {The Effect of the Guide Tree on Multiple Sequence Alignments and Subsequent
Phylogenetic Analysis},
booktitle = {Biocomputing 2008, Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, 4-8 January 2008},
pages = {25--36},
publisher = {World Scientific},
year = {2008},
url = {http://psb.stanford.edu/psb-online/proceedings/psb08/nelesen.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/NelesenLZLW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/ox/07/MoretTW07,
author = {Bernard M. E. Moret and
Jijun Tang and
Tandy J. Warnow},
editor = {Olivier Gascuel},
title = {Reconstructing phylogenies from gene-content and gene-order data},
booktitle = {Mathematics of Evolution and Phylogeny},
publisher = {Oxford University Press},
year = {2007},
timestamp = {Wed, 06 May 2020 15:31:00 +0200},
biburl = {https://dblp.org/rec/books/ox/07/MoretTW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/ox/07/WangW07,
author = {Li{-}San Wang and
Tandy J. Warnow},
editor = {Olivier Gascuel},
title = {Distance-based genome rearrangement phylogeny},
booktitle = {Mathematics of Evolution and Phylogeny},
publisher = {Oxford University Press},
year = {2007},
timestamp = {Wed, 06 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/ox/07/WangW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/siamcomp/WangW06,
author = {Li{-}San Wang and
Tandy J. Warnow},
title = {Reconstructing Chromosomal Evolution},
journal = {{SIAM} J. Comput.},
volume = {36},
number = {1},
pages = {99--131},
year = {2006},
url = {https://doi.org/10.1137/S0097539701397229},
doi = {10.1137/S0097539701397229},
timestamp = {Sat, 27 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/siamcomp/WangW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GanapathyGJLRW06,
author = {Ganeshkumar Ganapathy and
Barbara Goodson and
Robert K. Jansen and
Hai{-}Son Le and
Vijaya Ramachandran and
Tandy J. Warnow},
title = {Pattern Identification in Biogeography},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {3},
number = {4},
pages = {334--346},
year = {2006},
url = {https://doi.org/10.1109/TCBB.2006.57},
doi = {10.1109/TCBB.2006.57},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GanapathyGJLRW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/NakhlehWLJ05,
author = {Luay Nakhleh and
Tandy J. Warnow and
C. Randal Linder and
Katherine St. John},
title = {Reconstructing Reticulate Evolution in SpeciesTheory and Practice},
journal = {J. Comput. Biol.},
volume = {12},
number = {6},
pages = {796--811},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.796},
doi = {10.1089/CMB.2005.12.796},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/NakhlehWLJ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GanapathyGJRW05,
author = {Ganeshkumar Ganapathy and
Barbara Goodson and
Robert K. Jansen and
Vijaya Ramachandran and
Tandy J. Warnow},
editor = {Rita Casadio and
Gene Myers},
title = {Pattern Identification in Biogeography},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {116--127},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_10},
doi = {10.1007/11557067\_10},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GanapathyGJRW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/MoretNWLTPST04,
author = {Bernard M. E. Moret and
Luay Nakhleh and
Tandy J. Warnow and
C. Randal Linder and
Anna Tholse and
Anneke Padolina and
Jerry Sun and
Ruth E. Timme},
title = {Phylogenetic Networks: Modeling, Reconstructibility, and Accuracy},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {1},
number = {1},
pages = {13--23},
year = {2004},
url = {https://doi.org/10.1109/TCBB.2004.10},
doi = {10.1109/TCBB.2004.10},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/MoretNWLTPST04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/EvansW04,
author = {Steven N. Evans and
Tandy J. Warnow},
title = {Unidentifiable Divergence Times in Rates-across-Sites Models},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {1},
number = {3},
pages = {130--134},
year = {2004},
url = {https://doi.org/10.1109/TCBB.2004.34},
doi = {10.1109/TCBB.2004.34},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/EvansW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/WarnowZ04,
author = {Tandy J. Warnow and
Binhai Zhu},
title = {Preface},
journal = {Theor. Comput. Sci.},
volume = {325},
number = {3},
pages = {345--346},
year = {2004},
url = {https://doi.org/10.1016/j.tcs.2004.02.038},
doi = {10.1016/J.TCS.2004.02.038},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/WarnowZ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/RoshanMWW04,
author = {Usman Roshan and
Bernard M. E. Moret and
Tandy J. Warnow and
Tiffani L. Williams},
title = {Rec-I-DCM3: {A} Fast Algorithmic Technique for Reconstructing Large
Phylogenetic Trees},
booktitle = {3rd International {IEEE} Computer Society Computational Systems Bioinformatics
Conference, {CSB} 2004, Stanford, CA, USA, August 16-19, 2004},
pages = {98--109},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/CSB.2004.1332422},
doi = {10.1109/CSB.2004.1332422},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/RoshanMWW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/NakhlehWL04,
author = {Luay Nakhleh and
Tandy J. Warnow and
C. Randal Linder},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Reconstructing reticulate evolution in species: theory and practice},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {337--346},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974659},
doi = {10.1145/974614.974659},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/NakhlehWL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/soda/GanapathyRW04,
author = {Ganeshkumar Ganapathy and
Vijaya Ramachandran and
Tandy J. Warnow},
editor = {J. Ian Munro},
title = {On contract-and-refine transformations between phylogenetic trees},
booktitle = {Proceedings of the Fifteenth Annual {ACM-SIAM} Symposium on Discrete
Algorithms, {SODA} 2004, New Orleans, Louisiana, USA, January 11-14,
2004},
pages = {900--909},
publisher = {{SIAM}},
year = {2004},
url = {http://dl.acm.org/citation.cfm?id=982792.982928},
timestamp = {Mon, 14 Mar 2016 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/soda/GanapathyRW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jal/JohnWMV03,
author = {Katherine St. John and
Tandy J. Warnow and
Bernard M. E. Moret and
Lisa Vawter},
title = {Performance study of phylogenetic methods: (unweighted) quartet methods
and neighbor-joining},
journal = {J. Algorithms},
volume = {48},
number = {1},
pages = {173--193},
year = {2003},
url = {https://doi.org/10.1016/S0196-6774(03)00049-X},
doi = {10.1016/S0196-6774(03)00049-X},
timestamp = {Tue, 06 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jal/JohnWMV03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/lre/SpencerBWBMRWH03,
author = {Matthew Spencer and
Barbara Bordalejo and
Li{-}San Wang and
Adrian C. Barbrook and
Linne R. Mooney and
Peter Robinson and
Tandy J. Warnow and
Christopher J. Howe},
title = {Analyzing the Order of Items in Manuscripts of \emph{The Canterbury
Tales}},
journal = {Comput. Humanit.},
volume = {37},
number = {1},
pages = {97--109},
year = {2003},
url = {https://doi.org/10.1023/A:1021818600001},
doi = {10.1023/A:1021818600001},
timestamp = {Mon, 18 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/lre/SpencerBWBMRWH03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/NakhlehSWLMT03,
author = {Luay Nakhleh and
Jerry Sun and
Tandy J. Warnow and
C. Randal Linder and
Bernard M. E. Moret and
Anna Tholse},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Towards the Development of Computational Tools for Evaluating Phylogenetic
Network Reconstruction Methods},
booktitle = {Proceedings of the 8th Pacific Symposium on Biocomputing, {PSB} 2003,
Lihue, Hawaii, USA, January 3-7, 2003},
pages = {315--326},
year = {2003},
url = {http://psb.stanford.edu/psb-online/proceedings/psb03/nakhleh.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/NakhlehSWLMT03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GanapathyRW03,
author = {Ganeshkumar Ganapathy and
Vijaya Ramachandran and
Tandy J. Warnow},
editor = {Gary Benson and
Roderic D. M. Page},
title = {Better Hill-Climbing Searches for Parsimony},
booktitle = {Algorithms in Bioinformatics, Third International Workshop, {WABI}
2003, Budapest, Hungary, September 15-20, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2812},
pages = {245--258},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-39763-2\_19},
doi = {10.1007/978-3-540-39763-2\_19},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GanapathyRW03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cocoon/2003,
editor = {Tandy J. Warnow and
Binhai Zhu},
title = {Computing and Combinatorics, 9th Annual International Conference,
{COCOON} 2003, Big Sky, MT, USA, July 25-28, 2003, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2697},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/3-540-45071-8},
doi = {10.1007/3-540-45071-8},
isbn = {3-540-40534-8},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cocoon/2003.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/computer/MoretWW02,
author = {Bernard M. E. Moret and
Li{-}San Wang and
Tandy J. Warnow},
title = {Toward New Software for Computational Phylogenetics},
journal = {Computer},
volume = {35},
number = {7},
pages = {55--64},
year = {2002},
url = {https://doi.org/10.1109/MC.2002.1016902},
doi = {10.1109/MC.2002.1016902},
timestamp = {Wed, 12 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/computer/MoretWW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcss/MoretTWW02,
author = {Bernard M. E. Moret and
Jijun Tang and
Li{-}San Wang and
Tandy J. Warnow},
title = {Steps toward accurate reconstructions of phylogenies from gene-order
data},
journal = {J. Comput. Syst. Sci.},
volume = {65},
number = {3},
pages = {508--525},
year = {2002},
url = {https://doi.org/10.1016/S0022-0000(02)00007-7},
doi = {10.1016/S0022-0000(02)00007-7},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcss/MoretTWW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tjs/MoretBW02,
author = {Bernard M. E. Moret and
David A. Bader and
Tandy J. Warnow},
title = {High-Performance Algorithm Engineering for Computational Phylogenetics},
journal = {J. Supercomput.},
volume = {22},
number = {1},
pages = {99--111},
year = {2002},
url = {https://doi.org/10.1023/A:1014362705613},
doi = {10.1023/A:1014362705613},
timestamp = {Fri, 22 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tjs/MoretBW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/approx/GanapathyW02,
author = {Ganeshkumar Ganapathy and
Tandy J. Warnow},
editor = {Klaus Jansen and
Stefano Leonardi and
Vijay V. Vazirani},
title = {Approximating the Complement of the Maximum Compatible Subset of Leaves
of k Trees},
booktitle = {Approximation Algorithms for Combinatorial Optimization, 5th International
Workshop, {APPROX} 2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2462},
pages = {122--134},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45753-4\_12},
doi = {10.1007/3-540-45753-4\_12},
timestamp = {Tue, 27 Dec 2022 09:06:31 +0100},
biburl = {https://dblp.org/rec/conf/approx/GanapathyW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/StockhamWW02,
author = {Cara Stockham and
Li{-}San Wang and
Tandy J. Warnow},
title = {Statistically based postprocessing of phylogenetic analysis by clustering},
booktitle = {Proceedings of the Tenth International Conference on Intelligent Systems
for Molecular Biology, August 3-7, 2002, Edmonton, Alberta, Canada},
pages = {285--293},
year = {2002},
timestamp = {Mon, 14 Mar 2016 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/StockhamWW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/NakhlehMRJSW02,
author = {Luay Nakhleh and
Bernard M. E. Moret and
Usman Roshan and
Katherine St. John and
Jerry Sun and
Tandy J. Warnow},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {The Accuracy of Fast Phylogenetic Methods for Large Datasets},
booktitle = {Proceedings of the 7th Pacific Symposium on Biocomputing, {PSB} 2002,
Lihue, Hawaii, USA, January 3-7, 2002},
pages = {211--222},
year = {2002},
url = {http://psb.stanford.edu/psb-online/proceedings/psb02/nakhleh.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/NakhlehMRJSW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/WangJMRW02,
author = {Li{-}San Wang and
Robert K. Jansen and
Bernard M. E. Moret and
Linda A. Raubeson and
Tandy J. Warnow},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Fast Phylogenetic Methods for the Analysis of Genome Rearrangement
Data: An Empirical Study},
booktitle = {Proceedings of the 7th Pacific Symposium on Biocomputing, {PSB} 2002,
Lihue, Hawaii, USA, January 3-7, 2002},
pages = {524--535},
year = {2002},
url = {http://psb.stanford.edu/psb-online/proceedings/psb02/wang.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/WangJMRW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/NakhlehRVW02,
author = {Luay Nakhleh and
Usman Roshan and
Lisa Vawter and
Tandy J. Warnow},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Estimating the Deviation from a Molecular Clock},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {287--299},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_22},
doi = {10.1007/3-540-45784-4\_22},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/NakhlehRVW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/MoretRW02,
author = {Bernard M. E. Moret and
Usman Roshan and
Tandy J. Warnow},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {Sequence-Length Requirements for Phylogenetic Methods},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {343--356},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_26},
doi = {10.1007/3-540-45784-4\_26},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/MoretRW02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/MoretBW01,
author = {Bernard M. E. Moret and
David A. Bader and
Tandy J. Warnow},
editor = {Vassil N. Alexandrov and
Jack J. Dongarra and
Benjoe A. Juliano and
Ren{\'{e}} S. Renner and
Chih Jeng Kenneth Tan},
title = {High-Performance Algorithm Engineering for Computational Phylogenetics},
booktitle = {Computational Science - {ICCS} 2001, International Conference, San
Francisco, CA, USA, May 28-30, 2001. Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {2074},
pages = {1012--1021},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-45718-6\_107},
doi = {10.1007/3-540-45718-6\_107},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iccS/MoretBW01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/MoretWWW01,
author = {Bernard M. E. Moret and
Li{-}San Wang and
Tandy J. Warnow and
Stacia K. Wyman},
title = {New approaches for reconstructing phylogenies from gene order data},
booktitle = {Proceedings of the Ninth International Conference on Intelligent Systems
for Molecular Biology, July 21-25, 2001, Copenhagen, Denmark},
pages = {165--173},
year = {2001},
timestamp = {Mon, 14 Mar 2016 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/MoretWWW01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/NakhlehRJSW01,
author = {Luay Nakhleh and
Usman Roshan and
Katherine St. John and
Jerry Sun and
Tandy J. Warnow},
title = {Designing fast converging phylogenetic methods},
booktitle = {Proceedings of the Ninth International Conference on Intelligent Systems
for Molecular Biology, July 21-25, 2001, Copenhagen, Denmark},
pages = {190--198},
year = {2001},
timestamp = {Mon, 26 Feb 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/NakhlehRJSW01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/MoretWBWY01,
author = {Bernard M. E. Moret and
Stacia K. Wyman and
David A. Bader and
Tandy J. Warnow and
Mi Yan},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {A New Implmentation and Detailed Study of Breakpoint Analysis},
booktitle = {Proceedings of the 6th Pacific Symposium on Biocomputing, {PSB} 2001,
Hawaii, USA, January 3-7, 2001},
pages = {583--594},
year = {2001},
url = {http://psb.stanford.edu/psb-online/proceedings/psb01/moret.pdf},
timestamp = {Thu, 21 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/MoretWBWY01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/soda/WarnowMJ01,
author = {Tandy J. Warnow and
Bernard M. E. Moret and
Katherine St. John},
editor = {S. Rao Kosaraju},
title = {Absolute convergence: true trees from short sequences},
booktitle = {Proceedings of the Twelfth Annual Symposium on Discrete Algorithms,
January 7-9, 2001, Washington, DC, {USA}},
pages = {186--195},
publisher = {{ACM/SIAM}},
year = {2001},
url = {http://dl.acm.org/citation.cfm?id=365411.365443},
timestamp = {Mon, 14 Mar 2016 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/soda/WarnowMJ01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/soda/JohnWMV01,
author = {Katherine St. John and
Tandy J. Warnow and
Bernard M. E. Moret and
Lisa Vawter},
editor = {S. Rao Kosaraju},
title = {Performance study of phylogenetic methods: (unweighted) quartet methods
and neighbor-joining},
booktitle = {Proceedings of the Twelfth Annual Symposium on Discrete Algorithms,
January 7-9, 2001, Washington, DC, {USA}},
pages = {196--205},
publisher = {{ACM/SIAM}},
year = {2001},
url = {http://dl.acm.org/citation.cfm?id=365411.365908},
timestamp = {Mon, 14 Mar 2016 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/soda/JohnWMV01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/stoc/WangW01,
author = {Li{-}San Wang and
Tandy J. Warnow},
editor = {Jeffrey Scott Vitter and
Paul G. Spirakis and
Mihalis Yannakakis},
title = {Estimating true evolutionary distances between genomes},
booktitle = {Proceedings on 33rd Annual {ACM} Symposium on Theory of Computing,
July 6-8, 2001, Heraklion, Crete, Greece},
pages = {637--646},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/380752.380861},
doi = {10.1145/380752.380861},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/stoc/WangW01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/GanapathysaravanabavanW01,
author = {Ganeshkumar Ganapathysaravanabavan and
Tandy J. Warnow},
editor = {Olivier Gascuel and
Bernard M. E. Moret},
title = {Finding a Maximum Compatible Tree for a Bounded Number of Trees with
Bounded Degree Is Solvable in Polynomial Time},
booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI}
2001, Aarhus, Denmark, August 28-31, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2149},
pages = {156--163},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44696-6\_12},
doi = {10.1007/3-540-44696-6\_12},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/GanapathysaravanabavanW01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/NakhlehRJSW01,
author = {Luay Nakhleh and
Usman Roshan and
Katherine St. John and
Jerry Sun and
Tandy J. Warnow},
editor = {Olivier Gascuel and
Bernard M. E. Moret},
title = {The Performance of Phylogenetic Methods on Trees of Bounded Diameter},
booktitle = {Algorithms in Bioinformatics, First International Workshop, {WABI}
2001, Aarhus, Denmark, August 28-31, 2001, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2149},
pages = {214--226},
publisher = {Springer},
year = {2001},
url = {https://doi.org/10.1007/3-540-44696-6\_17},
doi = {10.1007/3-540-44696-6\_17},
timestamp = {Mon, 26 Feb 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wabi/NakhlehRJSW01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/BodlaenderFHWW00,
author = {Hans L. Bodlaender and
Michael R. Fellows and
Michael T. Hallett and
Todd Wareham and
Tandy J. Warnow},
title = {The hardness of perfect phylogeny, feasible register assignment and
other problems on thin colored graphs},
journal = {Theor. Comput. Sci.},
volume = {244},
number = {1-2},
pages = {167--188},
year = {2000},
url = {https://doi.org/10.1016/S0304-3975(98)00342-9},
doi = {10.1016/S0304-3975(98)00342-9},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcs/BodlaenderFHWW00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/MoretW00,
author = {Bernard M. E. Moret and
Tandy J. Warnow},
editor = {Rudolf Fleischer and
Bernard M. E. Moret and
Erik Meineche Schmidt},
title = {Reconstructing Optimal Phylogenetic Trees: {A} Challenge in Experimental
Algorithmics},
booktitle = {Experimental Algorithmics, From Algorithm Design to Robust and Efficient
Software [Dagstuhl seminar, September 2000]},
series = {Lecture Notes in Computer Science},
volume = {2547},
pages = {163--180},
publisher = {Springer},
year = {2000},
url = {https://doi.org/10.1007/3-540-36383-1\_8},
doi = {10.1007/3-540-36383-1\_8},
timestamp = {Tue, 14 May 2019 10:00:51 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/MoretW00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/CosnerJMRWWW00,
author = {Mary E. Cosner and
Robert K. Jansen and
Bernard M. E. Moret and
Linda A. Raubeson and
Li{-}San Wang and
Tandy J. Warnow and
Stacia K. Wyman},
editor = {Philip E. Bourne and
Michael Gribskov and
Russ B. Altman and
Nancy Jensen and
Debra A. Hope and
Thomas Lengauer and
Julie C. Mitchell and
Eric D. Scheeff and
Chris Smith and
Shawn Strande and
Helge Weissig},
title = {A New Fast Heuristic for Computing the Breakpoint Phylogeny and Experimental
Phylogenetic Analyses of Real and Synthetic Data},
booktitle = {Proceedings of the Eighth International Conference on Intelligent
Systems for Molecular Biology, August 19-23, 2000, La Jolla / San
Diego, CA, {USA}},
pages = {104--115},
publisher = {{AAAI}},
year = {2000},
url = {http://www.aaai.org/Library/ISMB/2000/ismb00-011.php},
timestamp = {Mon, 14 Mar 2016 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/CosnerJMRWWW00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/algorithmica/HenzingerKW99,
author = {Monika Rauch Henzinger and
Valerie King and
Tandy J. Warnow},
title = {Constructing a Tree from Homeomorphic Subtrees, with Applications
to Computational Evolutionary Biology},
journal = {Algorithmica},
volume = {24},
number = {1},
pages = {1--13},
year = {1999},
url = {https://doi.org/10.1007/PL00009268},
doi = {10.1007/PL00009268},
timestamp = {Wed, 17 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/algorithmica/HenzingerKW99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/HusonNW99,
author = {Daniel H. Huson and
Scott Nettles and
Tandy J. Warnow},
title = {Disk-Covering, a Fast-Converging Method for Phylogenetic Tree Reconstruction},
journal = {J. Comput. Biol.},
volume = {6},
number = {3/4},
pages = {369--386},
year = {1999},
url = {https://doi.org/10.1089/106652799318337},
doi = {10.1089/106652799318337},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/HusonNW99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jea/HusonNRWY99,
author = {Daniel H. Huson and
Scott Nettles and
Kenneth Rice and
Tandy J. Warnow and
Shibu Yooseph},
title = {Hybrid Tree Reconstruction Methods},
journal = {{ACM} J. Exp. Algorithmics},
volume = {4},
pages = {5},
year = {1999},
url = {https://doi.org/10.1145/347792.347812},
doi = {10.1145/347792.347812},
timestamp = {Thu, 25 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jea/HusonNRWY99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/rsa/ErdsSSW99,
author = {P{\'{e}}ter L. Erd{\"{o}}s and
Michael Anthony Steel and
L{\'{a}}szl{\'{o}} A. Sz{\'{e}}kely and
Tandy J. Warnow},
title = {A few logs suffice to build (almost) all trees {(I)}},
journal = {Random Struct. Algorithms},
volume = {14},
number = {2},
pages = {153--184},
year = {1999},
url = {https://doi.org/10.1002/(SICI)1098-2418(199903)14:2\&\#60;153::AID-RSA3\&\#62;3.0.CO;2-R},
doi = {10.1002/(SICI)1098-2418(199903)14:2\&\#60;153::AID-RSA3\&\#62;3.0.CO;2-R},
timestamp = {Fri, 26 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/rsa/ErdsSSW99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/siamcomp/BonetPWY99,
author = {Maria Luisa Bonet and
Cynthia A. Phillips and
Tandy J. Warnow and
Shibu Yooseph},
title = {Constructing Evolutionary Trees in the Presence of Polymorphic Characters},
journal = {{SIAM} J. Comput.},
volume = {29},
number = {1},
pages = {103--131},
year = {1999},
url = {https://doi.org/10.1137/S0097539796324636},
doi = {10.1137/S0097539796324636},
timestamp = {Sat, 27 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/siamcomp/BonetPWY99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/ErdosSSW99,
author = {P{\'{e}}ter L. Erd{\"{o}}s and
Michael Anthony Steel and
L{\'{a}}szl{\'{o}} A. Sz{\'{e}}kely and
Tandy J. Warnow},
title = {A Few Logs Suffice to Build (almost) All Trees: Part {II}},
journal = {Theor. Comput. Sci.},
volume = {221},
number = {1-2},
pages = {77--118},
year = {1999},
url = {https://doi.org/10.1016/S0304-3975(99)00028-6},
doi = {10.1016/S0304-3975(99)00028-6},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/ErdosSSW99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/HusonVW99,
author = {Daniel H. Huson and
Lisa Vawter and
Tandy J. Warnow},
editor = {Thomas Lengauer and
Reinhard Schneider and
Peer Bork and
Douglas L. Brutlag and
Janice I. Glasgow and
Hans{-}Werner Mewes and
Ralf Zimmer},
title = {Solving Large Scale Phylogenetic Problems using {DCM2}},
booktitle = {Proceedings of the Seventh International Conference on Intelligent
Systems for Molecular Biology, August 6-10, 1999, Heidelberg, Germany},
pages = {118--129},
publisher = {{AAAI}},
year = {1999},
url = {http://www.aaai.org/Library/ISMB/1999/ismb99-015.php},
timestamp = {Mon, 14 Mar 2016 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/HusonVW99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/HusonNW99,
author = {Daniel H. Huson and
Scott Nettles and
Tandy J. Warnow},
editor = {Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Obtaining highly accurate topology estimates of evolutionary trees
from very short sequences},
booktitle = {Proceedings of the Third Annual International Conference on Research
in Computational Molecular Biology, {RECOMB} 1999, Lyon, France, April
11-14, 1999},
pages = {198--207},
publisher = {{ACM}},
year = {1999},
url = {https://doi.org/10.1145/299432.299484},
doi = {10.1145/299432.299484},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/HusonNW99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wae/HusonSW99,
author = {Daniel H. Huson and
Kelly Ann Smith and
Tandy J. Warnow},
editor = {Jeffrey Scott Vitter and
Christos D. Zaroliagis},
title = {Estimating Large Distances in Phylogenetic Reconstruction},
booktitle = {Algorithm Engineering, 3rd International Workshop, {WAE} '99, London,
UK, July 19-21, 1999, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1668},
pages = {272--286},
publisher = {Springer},
year = {1999},
url = {https://doi.org/10.1007/3-540-48318-7\_22},
doi = {10.1007/3-540-48318-7\_22},
timestamp = {Fri, 07 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wae/HusonSW99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/soda/1999,
editor = {Robert Endre Tarjan and
Tandy J. Warnow},
title = {Proceedings of the Tenth Annual {ACM-SIAM} Symposium on Discrete Algorithms,
17-19 January 1999, Baltimore, Maryland, {USA}},
publisher = {{ACM/SIAM}},
year = {1999},
url = {http://dl.acm.org/citation.cfm?id=314500},
isbn = {0-89871-434-6},
timestamp = {Thu, 05 Jul 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/soda/1999.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BonetSWY98,
author = {Maria Luisa Bonet and
Mike A. Steel and
Tandy J. Warnow and
Shibu Yooseph},
title = {Better Methods for Solving Parsimony and Compatibility},
journal = {J. Comput. Biol.},
volume = {5},
number = {3},
pages = {391--407},
year = {1998},
url = {https://doi.org/10.1089/cmb.1998.5.391},
doi = {10.1089/CMB.1998.5.391},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BonetSWY98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/siamcomp/KannanW98,
author = {Sampath Kannan and
Tandy J. Warnow},
title = {Computing the Local Consensus of Trees},
journal = {{SIAM} J. Comput.},
volume = {27},
number = {6},
pages = {1695--1724},
year = {1998},
url = {https://doi.org/10.1137/S0097539795287642},
doi = {10.1137/S0097539795287642},
timestamp = {Sat, 27 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/siamcomp/KannanW98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BonetSWY98,
author = {Maria Luisa Bonet and
Mike A. Steel and
Tandy J. Warnow and
Shibu Yooseph},
editor = {Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Better methods for solving parsimony and compatibility},
booktitle = {Proceedings of the Second Annual International Conference on Research
in Computational Molecular Biology, {RECOMB} 1998, New York, NY, USA,
March 22-25, 1998},
pages = {40--49},
publisher = {{ACM}},
year = {1998},
url = {https://doi.org/10.1145/279069.279081},
doi = {10.1145/279069.279081},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/BonetSWY98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wae/HusonNRWY98,
author = {Daniel H. Huson and
Scott Nettles and
Kenneth Rice and
Tandy J. Warnow and
Shibu Yooseph},
editor = {Kurt Mehlhorn},
title = {Hybrid Tree Reconstruction Methods},
booktitle = {Algorithm Engineering, 2nd International Workshop, {WAE} '92, Saarbr{\"{u}}cken,
Germany, August 20-22, 1998, Proceedings},
pages = {179--192},
publisher = {Max-Planck-Institut f{\"{u}}r Informatik},
year = {1998},
timestamp = {Mon, 10 May 2021 14:22:35 +0200},
biburl = {https://dblp.org/rec/conf/wae/HusonNRWY98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cai/ErdosSSW97,
author = {P{\'{e}}ter L. Erd{\"{o}}s and
Mike A. Steel and
L{\'{a}}szl{\'{o}} A. Sz{\'{e}}kely and
Tandy J. Warnow},
title = {Local Quartet Splits of a Binary Tree Infer All Quartet Splits Via
One Dyadic Inference Rule},
journal = {Comput. Artif. Intell.},
volume = {16},
number = {2},
pages = {217--227},
year = {1997},
url = {http://www.cai.sk/ojs/index.php/cai/article/view/669},
timestamp = {Mon, 14 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/cai/ErdosSSW97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/siamcomp/KannanW97,
author = {Sampath Kannan and
Tandy J. Warnow},
title = {A Fast Algorithm for the Computation and Enumeration of Perfect Phylogenies},
journal = {{SIAM} J. Comput.},
volume = {26},
number = {6},
pages = {1749--1763},
year = {1997},
url = {https://doi.org/10.1137/S0097539794279067},
doi = {10.1137/S0097539794279067},
timestamp = {Sat, 27 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/siamcomp/KannanW97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cocoon/RiceW97,
author = {Kenneth Rice and
Tandy J. Warnow},
editor = {Tao Jiang and
D. T. Lee},
title = {Parsimony is Hard to Beat},
booktitle = {Computing and Combinatorics, Third Annual International Conference,
{COCOON} '97, Shanghai, China, August 20-22, 1997, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1276},
pages = {124--133},
publisher = {Springer},
year = {1997},
url = {https://doi.org/10.1007/BFb0045079},
doi = {10.1007/BFB0045079},
timestamp = {Tue, 14 May 2019 10:00:35 +0200},
biburl = {https://dblp.org/rec/conf/cocoon/RiceW97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icalp/ErdosSSW97,
author = {P{\'{e}}ter L. Erd{\"{o}}s and
Mike A. Steel and
L{\'{a}}szl{\'{o}} A. Sz{\'{e}}kely and
Tandy J. Warnow},
editor = {Pierpaolo Degano and
Roberto Gorrieri and
Alberto Marchetti{-}Spaccamela},
title = {Constructing Big Trees from Short Sequences},
booktitle = {Automata, Languages and Programming, 24th International Colloquium,
ICALP'97, Bologna, Italy, 7-11 July 1997, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1256},
pages = {827--837},
publisher = {Springer},
year = {1997},
url = {https://doi.org/10.1007/3-540-63165-8\_235},
doi = {10.1007/3-540-63165-8\_235},
timestamp = {Tue, 14 May 2019 10:00:44 +0200},
biburl = {https://dblp.org/rec/conf/icalp/ErdosSSW97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dam/GoldbergGPSW96,
author = {Leslie Ann Goldberg and
Paul W. Goldberg and
Cynthia A. Phillips and
Elizabeth Sweedyk and
Tandy J. Warnow},
title = {Minimizing Phylogenetic Number To Find Good Evolutionary Trees},
journal = {Discret. Appl. Math.},
volume = {71},
number = {1-3},
pages = {111--136},
year = {1996},
url = {https://doi.org/10.1016/S0166-218X(96)00060-1},
doi = {10.1016/S0166-218X(96)00060-1},
timestamp = {Thu, 11 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dam/GoldbergGPSW96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dam/PhillipsW96,
author = {Cynthia A. Phillips and
Tandy J. Warnow},
title = {The Asymmetric Median Tree - {A} New Model for Building Consensus
Trees},
journal = {Discret. Appl. Math.},
volume = {71},
number = {1-3},
pages = {311--335},
year = {1996},
url = {https://doi.org/10.1016/S0166-218X(96)00071-6},
doi = {10.1016/S0166-218X(96)00071-6},
timestamp = {Thu, 11 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dam/PhillipsW96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jal/KannanLW96,
author = {Sampath Kannan and
Eugene L. Lawler and
Tandy J. Warnow},
title = {Determining the Evolutionary Tree Using Experiments},
journal = {J. Algorithms},
volume = {21},
number = {1},
pages = {26--50},
year = {1996},
url = {https://doi.org/10.1006/jagm.1996.0035},
doi = {10.1006/JAGM.1996.0035},
timestamp = {Fri, 13 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jal/KannanLW96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/PhillipsW96,
author = {Cynthia A. Phillips and
Tandy J. Warnow},
editor = {Daniel S. Hirschberg and
Eugene W. Myers},
title = {The Asymmetric Median Tree - {A} New model for Building Consensus
Trees},
booktitle = {Combinatorial Pattern Matching, 7th Annual Symposium, {CPM} 96, Laguna
Beach, California, USA, June 10-12, 1996, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1075},
pages = {234--252},
publisher = {Springer},
year = {1996},
url = {https://doi.org/10.1007/3-540-61258-0\_18},
doi = {10.1007/3-540-61258-0\_18},
timestamp = {Tue, 14 May 2019 10:00:38 +0200},
biburl = {https://dblp.org/rec/conf/cpm/PhillipsW96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dimacs/BonetPWY96,
author = {Maria Luisa Bonet and
Cynthia A. Phillips and
Tandy J. Warnow and
Shibu Yooseph},
editor = {Boris G. Mirkin and
Fred R. McMorris and
Fred S. Roberts and
Andrey Rzhetsky},
title = {Inferring evolutionary trees from polymorphic characters, and an analysis
of the Indo-European family of languages},
booktitle = {Mathematical Hierarchies and Biology, Proceedings of a {DIMACS} Workshop,
November 13-15, 1996},
series = {{DIMACS} Series in Discrete Mathematics and Theoretical Computer Science},
volume = {37},
pages = {43--56},
publisher = {{DIMACS/AMS}},
year = {1996},
url = {https://doi.org/10.1090/dimacs/037/03},
doi = {10.1090/DIMACS/037/03},
timestamp = {Mon, 22 May 2023 16:07:35 +0200},
biburl = {https://dblp.org/rec/conf/dimacs/BonetPWY96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/soda/WarnowRT96,
author = {Tandy J. Warnow and
Donald Ringe and
Ann Taylor},
editor = {{\'{E}}va Tardos},
title = {Reconstructing the Evolutionary History of Natural Languages},
booktitle = {Proceedings of the Seventh Annual {ACM-SIAM} Symposium on Discrete
Algorithms, 28-30 January 1996, Atlanta, Georgia, {USA}},
pages = {314--322},
publisher = {{ACM/SIAM}},
year = {1996},
url = {http://dl.acm.org/citation.cfm?id=313852.314078},
timestamp = {Thu, 05 Jul 2018 07:29:31 +0200},
biburl = {https://dblp.org/rec/conf/soda/WarnowRT96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/soda/HenzingerKW96,
author = {Monika Rauch Henzinger and
Valerie King and
Tandy J. Warnow},
editor = {{\'{E}}va Tardos},
title = {Constructing a Tree from Homeomorphic Subtrees, with Applications
to Computational Evolutionary Biology},
booktitle = {Proceedings of the Seventh Annual {ACM-SIAM} Symposium on Discrete
Algorithms, 28-30 January 1996, Atlanta, Georgia, {USA}},
pages = {333--340},
publisher = {{ACM/SIAM}},
year = {1996},
url = {http://dl.acm.org/citation.cfm?id=313852.314080},
timestamp = {Mon, 14 Mar 2016 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/soda/HenzingerKW96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/stoc/BonetPWY96,
author = {Maria Luisa Bonet and
Cynthia A. Phillips and
Tandy J. Warnow and
Shibu Yooseph},
editor = {Gary L. Miller},
title = {Constructing Evolutionary Trees in the Presence of Polymorphic Characters},
booktitle = {Proceedings of the Twenty-Eighth Annual {ACM} Symposium on the Theory
of Computing, Philadelphia, Pennsylvania, USA, May 22-24, 1996},
pages = {220--229},
publisher = {{ACM}},
year = {1996},
url = {https://doi.org/10.1145/237814.237867},
doi = {10.1145/237814.237867},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/stoc/BonetPWY96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/algorithmica/FarachKW95,
author = {Martin Farach and
Sampath Kannan and
Tandy J. Warnow},
title = {A Robust Model for Finding Optimal Evolutionary Trees},
journal = {Algorithmica},
volume = {13},
number = {1/2},
pages = {155--179},
year = {1995},
url = {https://doi.org/10.1007/BF01188585},
doi = {10.1007/BF01188585},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/algorithmica/FarachKW95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BenhamKPW95,
author = {Craig J. Benham and
Sampath Kannan and
Michael Paterson and
Tandy J. Warnow},
title = {Hen's Teeth and Whale's Feet: Generalized Characters and Their Compatibility},
journal = {J. Comput. Biol.},
volume = {2},
number = {4},
pages = {515--525},
year = {1995},
url = {https://doi.org/10.1089/cmb.1995.2.515},
doi = {10.1089/CMB.1995.2.515},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BenhamKPW95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/siamcomp/KannanW95,
author = {Sampath Kannan and
Tandy J. Warnow},
title = {Tree Reconstruction from Partial Orders},
journal = {{SIAM} J. Comput.},
volume = {24},
number = {3},
pages = {511--519},
year = {1995},
url = {https://doi.org/10.1137/S0097539793252195},
doi = {10.1137/S0097539793252195},
timestamp = {Sat, 27 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/siamcomp/KannanW95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/BenhamKW95,
author = {Craig J. Benham and
Sampath Kannan and
Tandy J. Warnow},
editor = {Zvi Galil and
Esko Ukkonen},
title = {Of Chicken Teeth and Mouse Eyes, or Generalized Character Compatibility},
booktitle = {Combinatorial Pattern Matching, 6th Annual Symposium, {CPM} 95, Espoo,
Finland, July 5-7, 1995, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {937},
pages = {17--26},
publisher = {Springer},
year = {1995},
url = {https://doi.org/10.1007/3-540-60044-2\_31},
doi = {10.1007/3-540-60044-2\_31},
timestamp = {Thu, 29 Aug 2019 15:20:22 +0200},
biburl = {https://dblp.org/rec/conf/cpm/BenhamKW95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/GoldbergGPSW95,
author = {Leslie Ann Goldberg and
Paul W. Goldberg and
Cynthia A. Phillips and
Elizabeth Sweedyk and
Tandy J. Warnow},
editor = {Zvi Galil and
Esko Ukkonen},
title = {Minimizing Phylogenetic Number to find Good Evolutionary Trees},
booktitle = {Combinatorial Pattern Matching, 6th Annual Symposium, {CPM} 95, Espoo,
Finland, July 5-7, 1995, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {937},
pages = {102--127},
publisher = {Springer},
year = {1995},
url = {https://doi.org/10.1007/3-540-60044-2\_38},
doi = {10.1007/3-540-60044-2\_38},
timestamp = {Thu, 08 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cpm/GoldbergGPSW95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/soda/KannanWY95,
author = {Sampath Kannan and
Tandy J. Warnow and
Shibu Yooseph},
editor = {Kenneth L. Clarkson},
title = {Computing the Local Consensus of Trees},
booktitle = {Proceedings of the Sixth Annual {ACM-SIAM} Symposium on Discrete Algorithms,
22-24 January 1995. San Francisco, California, {USA}},
pages = {68--77},
publisher = {{ACM/SIAM}},
year = {1995},
url = {http://dl.acm.org/citation.cfm?id=313651.313665},
timestamp = {Thu, 05 Jul 2018 07:29:25 +0200},
biburl = {https://dblp.org/rec/conf/soda/KannanWY95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/soda/KannanW95,
author = {Sampath Kannan and
Tandy J. Warnow},
editor = {Kenneth L. Clarkson},
title = {A Fast Algorithm for the Computation and Enumeration of Perfect Phylogenies
when the Number of Character States is Fixed},
booktitle = {Proceedings of the Sixth Annual {ACM-SIAM} Symposium on Discrete Algorithms,
22-24 January 1995. San Francisco, California, {USA}},
pages = {595--603},
publisher = {{ACM/SIAM}},
year = {1995},
url = {http://dl.acm.org/citation.cfm?id=313651.313823},
timestamp = {Mon, 14 Mar 2016 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/soda/KannanW95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jal/Warnow94,
author = {Tandy J. Warnow},
title = {Tree Compatibility and Inferring Evolutionary History},
journal = {J. Algorithms},
volume = {16},
number = {3},
pages = {388--407},
year = {1994},
url = {https://doi.org/10.1006/jagm.1994.1018},
doi = {10.1006/JAGM.1994.1018},
timestamp = {Sun, 28 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jal/Warnow94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/siamcomp/KannanW94,
author = {Sampath Kannan and
Tandy J. Warnow},
title = {Inferring Evolutionary History from {DNA} Sequences},
journal = {{SIAM} J. Comput.},
volume = {23},
number = {4},
pages = {713--737},
year = {1994},
url = {https://doi.org/10.1137/S0097539791222171},
doi = {10.1137/S0097539791222171},
timestamp = {Sat, 27 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/siamcomp/KannanW94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/siamdm/McMorrisWW94,
author = {Fred R. McMorris and
Tandy J. Warnow and
Thomas Wimer},
title = {Triangulating Vertex-Colored Graphs},
journal = {{SIAM} J. Discret. Math.},
volume = {7},
number = {2},
pages = {296--306},
year = {1994},
url = {https://doi.org/10.1137/S0895480192229273},
doi = {10.1137/S0895480192229273},
timestamp = {Sat, 25 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/siamdm/McMorrisWW94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ipl/SteelW93,
author = {Mike A. Steel and
Tandy J. Warnow},
title = {Kaikoura Tree Theorems: Computing the Maximum Agreement Subtree},
journal = {Inf. Process. Lett.},
volume = {48},
number = {2},
pages = {77--82},
year = {1993},
url = {https://doi.org/10.1016/0020-0190(93)90181-8},
doi = {10.1016/0020-0190(93)90181-8},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ipl/SteelW93.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/soda/McMorrisWW93,
author = {Fred R. McMorris and
Tandy J. Warnow and
Thomas Wimer},
editor = {Vijaya Ramachandran},
title = {Triangulating Vertex Colored Graphs},
booktitle = {Proceedings of the Fourth Annual {ACM/SIGACT-SIAM} Symposium on Discrete
Algorithms, 25-27 January 1993, Austin, Texas, {USA}},
pages = {120--127},
publisher = {{ACM/SIAM}},
year = {1993},
url = {http://dl.acm.org/citation.cfm?id=313559.313635},
timestamp = {Thu, 05 Jul 2018 07:29:11 +0200},
biburl = {https://dblp.org/rec/conf/soda/McMorrisWW93.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/soda/Warnow93,
author = {Tandy J. Warnow},
editor = {Vijaya Ramachandran},
title = {Tree Compatibility and Inferring Evoluationary History},
booktitle = {Proceedings of the Fourth Annual {ACM/SIGACT-SIAM} Symposium on Discrete
Algorithms, 25-27 January 1993, Austin, Texas, {USA}},
pages = {382--391},
publisher = {{ACM/SIAM}},
year = {1993},
url = {http://dl.acm.org/citation.cfm?id=313559.313837},
timestamp = {Mon, 14 Mar 2016 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/soda/Warnow93.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/stoc/FarachKW93,
author = {Martin Farach and
Sampath Kannan and
Tandy J. Warnow},
editor = {S. Rao Kosaraju and
David S. Johnson and
Alok Aggarwal},
title = {A robust model for finding optimal evolutionary trees},
booktitle = {Proceedings of the Twenty-Fifth Annual {ACM} Symposium on Theory of
Computing, May 16-18, 1993, San Diego, CA, {USA}},
pages = {137--145},
publisher = {{ACM}},
year = {1993},
url = {https://doi.org/10.1145/167088.167132},
doi = {10.1145/167088.167132},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/stoc/FarachKW93.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wads/KannanW93,
author = {Sampath Kannan and
Tandy J. Warnow},
editor = {Frank K. H. A. Dehne and
J{\"{o}}rg{-}R{\"{u}}diger Sack and
Nicola Santoro and
Sue Whitesides},
title = {Tree Reconstruction from Partial Orders},
booktitle = {Algorithms and Data Structures, Third Workshop, {WADS} '93, Montr{\'{e}}al,
Canada, August 11-13, 1993, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {709},
pages = {397--408},
publisher = {Springer},
year = {1993},
url = {https://doi.org/10.1007/3-540-57155-8\_265},
doi = {10.1007/3-540-57155-8\_265},
timestamp = {Tue, 14 May 2019 10:00:50 +0200},
biburl = {https://dblp.org/rec/conf/wads/KannanW93.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/siamdm/KannanW92,
author = {Sampath Kannan and
Tandy J. Warnow},
title = {Triangulating 3-Colored Graphs},
journal = {{SIAM} J. Discret. Math.},
volume = {5},
number = {2},
pages = {249--258},
year = {1992},
url = {https://doi.org/10.1137/0405019},
doi = {10.1137/0405019},
timestamp = {Sat, 25 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/siamdm/KannanW92.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icalp/BodlaenderFW92,
author = {Hans L. Bodlaender and
Michael R. Fellows and
Tandy J. Warnow},
editor = {Werner Kuich},
title = {Two Strikes Against Perfect Phylogeny},
booktitle = {Automata, Languages and Programming, 19th International Colloquium,
ICALP92, Vienna, Austria, July 13-17, 1992, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {623},
pages = {273--283},
publisher = {Springer},
year = {1992},
url = {https://doi.org/10.1007/3-540-55719-9\_80},
doi = {10.1007/3-540-55719-9\_80},
timestamp = {Mon, 16 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icalp/BodlaenderFW92.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/soda/KannanW91,
author = {Sampath Kannan and
Tandy J. Warnow},
editor = {Alok Aggarwal},
title = {Triangulating Three-Colored Graphs},
booktitle = {Proceedings of the Second Annual {ACM/SIGACT-SIAM} Symposium on Discrete
Algorithms, 28-30 January 1991, San Francisco, California, {USA}},
pages = {337--343},
publisher = {{ACM/SIAM}},
year = {1991},
url = {http://dl.acm.org/citation.cfm?id=127787.127850},
timestamp = {Thu, 05 Jul 2018 07:28:55 +0200},
biburl = {https://dblp.org/rec/conf/soda/KannanW91.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/focs/KannanW90,
author = {Sampath Kannan and
Tandy J. Warnow},
title = {Inferring Evolutionary History from {DNA} Sequences (Extended Abstract)},
booktitle = {31st Annual Symposium on Foundations of Computer Science, St. Louis,
Missouri, USA, October 22-24, 1990, Volume {I}},
pages = {362--371},
publisher = {{IEEE} Computer Society},
year = {1990},
url = {https://doi.org/10.1109/FSCS.1990.89555},
doi = {10.1109/FSCS.1990.89555},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/focs/KannanW90.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/soda/KannanLW90,
author = {Sampath Kannan and
Eugene L. Lawler and
Tandy J. Warnow},
editor = {David S. Johnson},
title = {Determining the Evolutionary Tree},
booktitle = {Proceedings of the First Annual {ACM-SIAM} Symposium on Discrete Algorithms,
22-24 January 1990, San Francisco, California, {USA}},
pages = {475--484},
publisher = {{SIAM}},
year = {1990},
url = {http://dl.acm.org/citation.cfm?id=320176.320234},
timestamp = {Thu, 05 Jul 2018 07:28:50 +0200},
biburl = {https://dblp.org/rec/conf/soda/KannanLW90.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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