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ORCIDBibTeX records: Björn Usadel
@article{DBLP:journals/data/ZhouBBRMSTUK23,
author = {Xiao{-}Ran Zhou and
Sebastian Beier and
Dominik Brilhaus and
Cristina Martins Rodrigues and
Timo M{\"{u}}hlhaus and
Dirk von Suchodoletz and
Richard M. Twyman and
Bj{\"{o}}rn Usadel and
Angela Kranz},
title = {DataPLAN: {A} Web-Based Data Management Plan Generator for the Plant
Sciences},
journal = {Data},
volume = {8},
number = {11},
pages = {159},
year = {2023},
url = {https://doi.org/10.3390/data8110159},
doi = {10.3390/DATA8110159},
timestamp = {Fri, 26 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/data/ZhouBBRMSTUK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/insk/SpeckaMWAABFFGGHHHHKLLLLMRRSSSSUWE23,
author = {Xenia Specka and
Daniel Martini and
Claus Weiland and
Daniel Arend and
Senthold Asseng and
Franziska Boehm and
Til Feike and
Juliane Fluck and
David Gackstetter and
Aida Gonzales{-}Mellado and
Thomas Hartmann and
Jan{-}Henrik Haunert and
Florian Hoedt and
Carsten Hoffmann and
Patrick K{\"{o}}nig and
Matthias Lange and
Stephan Lesch and
Birte Lindst{\"{a}}dt and
Gunnar Lischeid and
Markus M{\"{o}}ller and
Uwe Rascher and
Jochen Christoph Reif and
Markus Schmalzl and
Matthias Senft and
Ulrike Stahl and
Nikolai Svoboda and
Bj{\"{o}}rn Usadel and
Heidi Webber and
Frank Ewert},
title = {FAIRagro: Ein Konsortium in der Nationalen Forschungsdateninfrastruktur
{(NFDI)} f{\"{u}}r Forschungsdaten in der Agrosystemforschung},
journal = {Inform. Spektrum},
volume = {46},
number = {1},
pages = {24--35},
year = {2023},
url = {https://doi.org/10.1007/s00287-022-01520-w},
doi = {10.1007/S00287-022-01520-W},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/insk/SpeckaMWAABFFGGHHHHKLLLLMRRSSSSUWE23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2309-07129,
author = {Kathryn Dumschott and
Hannah D{\"{o}}rpholz and
Marie{-}Ang{\'{e}}lique Laporte and
Dominik Brilhaus and
Andrea Schrader and
Bj{\"{o}}rn Usadel and
Steffen Neumann and
Elizabeth Arnaud and
Angela Kranz},
title = {Ontologies for increasing the FAIRness of plant research data},
journal = {CoRR},
volume = {abs/2309.07129},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2309.07129},
doi = {10.48550/ARXIV.2309.07129},
eprinttype = {arXiv},
eprint = {2309.07129},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2309-07129.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/WibbergBBBGGHKRRSSTTUK19,
author = {Daniel Wibberg and
B{\'{e}}r{\'{e}}nice Batut and
Peter Belmann and
Jochen Blom and
Frank Oliver Gl{\"{o}}ckner and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Nils Hoffmann and
Nils Kleinb{\"{o}}lting and
Ren{\'{e}} Rahn and
Maja Rey and
Uwe Scholz and
Malvika Sharan and
Andreas Tauch and
Ulrike Trojahn and
Bj{\"{o}}rn Usadel and
Oliver Kohlbacher},
title = {The de.NBI / {ELIXIR-DE} training platform - Bioinformatics training
in Germany and across Europe within {ELIXIR}},
journal = {F1000Research},
volume = {8},
pages = {1877},
year = {2019},
url = {https://doi.org/10.12688/f1000research.20244.1},
doi = {10.12688/F1000RESEARCH.20244.1},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/f1000research/WibbergBBBGGHKRRSSTTUK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/BolgerAU18,
author = {Marie E. Bolger and
Borjana Arsova and
Bj{\"{o}}rn Usadel},
title = {Plant genome and transcriptome annotations: from misconceptions to
simple solutions},
journal = {Briefings Bioinform.},
volume = {19},
number = {3},
pages = {437--449},
year = {2018},
url = {https://doi.org/10.1093/bib/bbw135},
doi = {10.1093/BIB/BBW135},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/BolgerAU18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/NafissiFU15,
author = {Anahita Nafissi and
Fabio Fiorani and
Bj{\"{o}}rn Usadel},
editor = {Francisco M. Couto and
Janna Hastings},
title = {Mapping a database schema to the structure of an existing ontology},
booktitle = {Proceedings of the International Conference on Biomedical Ontology,
{ICBO} 2015, Lisbon, Portugal, July 27-30, 2015},
series = {{CEUR} Workshop Proceedings},
volume = {1515},
publisher = {CEUR-WS.org},
year = {2015},
url = {https://ceur-ws.org/Vol-1515/poster14.pdf},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/NafissiFU15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwomp/JoppichSBKU15,
author = {Markus Joppich and
Dirk Schmidl and
Anthony M. Bolger and
Torsten W. Kuhlen and
Bj{\"{o}}rn Usadel},
editor = {Christian Terboven and
Bronis R. de Supinski and
Pablo Reble and
Barbara M. Chapman and
Matthias S. M{\"{u}}ller},
title = {PAGANtec: OpenMP Parallel Error Correction for Next-Generation Sequencing
Data},
booktitle = {OpenMP: Heterogenous Execution and Data Movements - 11th International
Workshop on OpenMP, {IWOMP} 2015, Aachen, Germany, October 1-2, 2015,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9342},
pages = {3--17},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-24595-9\_1},
doi = {10.1007/978-3-319-24595-9\_1},
timestamp = {Wed, 25 Sep 2019 18:20:09 +0200},
biburl = {https://dblp.org/rec/conf/iwomp/JoppichSBKU15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BolgerLU14,
author = {Anthony M. Bolger and
Marc Lohse and
Bj{\"{o}}rn Usadel},
title = {Trimmomatic: a flexible trimmer for Illumina sequence data},
journal = {Bioinform.},
volume = {30},
number = {15},
pages = {2114--2120},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu170},
doi = {10.1093/BIOINFORMATICS/BTU170},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BolgerLU14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RamsakBRKMUG14,
author = {Ziva Ramsak and
Spela Baebler and
Ana Rotter and
Matej Korbar and
Igor Mozetic and
Bj{\"{o}}rn Usadel and
Kristina Gruden},
title = {GoMapMan: integration, consolidation and visualization of plant gene
annotations within the MapMan ontology},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {1167--1175},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1056},
doi = {10.1093/NAR/GKT1056},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/RamsakBRKMUG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/LiBMGVUCCWZS13,
author = {Jing{-}Woei Li and
Dan M. Bolser and
Magnus Manske and
Federico Manuel Giorgi and
Nikolay Vyahhi and
Bj{\"{o}}rn Usadel and
Bernardo J. Clavijo and
Ting{-}Fung Chan and
Nathalie Wong and
Daniel R. Zerbino and
Maria Victoria Schneider},
title = {The {NGS} WikiBook: a dynamic collaborative online training effort
with long-term sustainability},
journal = {Briefings Bioinform.},
volume = {14},
number = {5},
pages = {548--555},
year = {2013},
url = {https://doi.org/10.1093/bib/bbt045},
doi = {10.1093/BIB/BBT045},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/LiBMGVUCCWZS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiRMSUYOB12,
author = {Jing{-}Woei Li and
Keith Robison and
Marcel Martin and
Andreas Sj{\"{o}}din and
Bj{\"{o}}rn Usadel and
Matthew Young and
Eric C. Olivares and
Dan M. Bolser},
title = {The SEQanswers wiki: a wiki database of tools for high-throughput
sequencing analysis},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {1313--1317},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr1058},
doi = {10.1093/NAR/GKR1058},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LiRMSUYOB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LohseBNFLSU12,
author = {Marc Lohse and
Anthony M. Bolger and
Axel Nagel and
Alisdair R. Fernie and
John E. Lunn and
Mark Stitt and
Bj{\"{o}}rn Usadel},
title = {\emph{R}obi\emph{NA}: a user-friendly, integrated software solution
for RNA-Seq-based transcriptomics},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Web-Server-Issue},
pages = {622--627},
year = {2012},
url = {https://doi.org/10.1093/nar/gks540},
doi = {10.1093/NAR/GKS540},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LohseBNFLSU12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hvei/NagelLBSU11,
author = {Axel Nagel and
Marc Lohse and
Anthony M. Bolger and
Mark Stitt and
Bj{\"{o}}rn Usadel},
editor = {Bernice E. Rogowitz and
Thrasyvoulos N. Pappas},
title = {Visualizing large, high-throughput datasets based on the cognitive
representation of biological pathways},
booktitle = {Human Vision and Electronic Imaging XVI, part of the IS{\&}T-SPIE
Electronic Imaging Symposium, San Francisco Airport, California, USA,
January 24-27, 2011, Proceedings},
series = {{SPIE} Proceedings},
volume = {7865},
pages = {78650H},
publisher = {SPIE/IS{\&}T},
year = {2011},
url = {https://doi.org/10.1117/12.881998},
doi = {10.1117/12.881998},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hvei/NagelLBSU11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GiorgiBLU10,
author = {Federico M. Giorgi and
Anthony M. Bolger and
Marc Lohse and
Bj{\"{o}}rn Usadel},
title = {Algorithm-driven Artifacts in median polish summarization of Microarray
data},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {553},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-553},
doi = {10.1186/1471-2105-11-553},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GiorgiBLU10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclp/GebserSTUV08,
author = {Martin Gebser and
Torsten Schaub and
Sven Thiele and
Bj{\"{o}}rn Usadel and
Philippe Veber},
editor = {Maria Garcia de la Banda and
Enrico Pontelli},
title = {Detecting Inconsistencies in Large Biological Networks with Answer
Set Programming},
booktitle = {Logic Programming, 24th International Conference, {ICLP} 2008, Udine,
Italy, December 9-13 2008, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5366},
pages = {130--144},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-89982-2\_19},
doi = {10.1007/978-3-540-89982-2\_19},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iclp/GebserSTUV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/StrickertSUS07,
author = {Marc Strickert and
Nese Sreenivasulu and
Bj{\"{o}}rn Usadel and
Udo Seiffert},
title = {Correlation-maximizing surrogate gene space for visual mining of gene
expression patterns in developing barley endosperm tissue},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-165},
doi = {10.1186/1471-2105-8-165},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/StrickertSUS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/UsadelNSGBRSKHPFS06,
author = {Bj{\"{o}}rn Usadel and
Axel Nagel and
Dirk Steinhauser and
Yves Gibon and
Oliver E. Bl{\"{a}}sing and
Henning Redestig and
Nese Sreenivasulu and
Leonard Krall and
Matthew A. Hannah and
Fabien Poree and
Alisdair R. Fernie and
Mark Stitt},
title = {PageMan: An interactive ontology tool to generate, display, and annotate
overview graphs for profiling experiments},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {535},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-535},
doi = {10.1186/1471-2105-7-535},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/UsadelNSGBRSKHPFS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KopkaSKBUBDWGSWFS05,
author = {Joachim Kopka and
Nicolas Schauer and
Stephan Krueger and
Claudia Birkemeyer and
Bj{\"{o}}rn Usadel and
Eveline Bergm{\"{u}}ller and
Peter D{\"{o}}rmann and
Wolfram Weckwerth and
Yves Gibon and
Mark Stitt and
Lothar Willmitzer and
Alisdair R. Fernie and
Dirk Steinhauser},
title = {GMD@CSB.DB: the Golm Metabolome Database},
journal = {Bioinform.},
volume = {21},
number = {8},
pages = {1635--1638},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti236},
doi = {10.1093/BIOINFORMATICS/BTI236},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KopkaSKBUBDWGSWFS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SteinhauserULTK04,
author = {Dirk Steinhauser and
Bj{\"{o}}rn Usadel and
Alexander L{\"{u}}demann and
Oliver Thimm and
Joachim Kopka},
title = {{CSB.DB:} a comprehensive systems-biology database},
journal = {Bioinform.},
volume = {20},
number = {18},
pages = {3647--3651},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth398},
doi = {10.1093/BIOINFORMATICS/BTH398},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SteinhauserULTK04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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