BibTeX records: Drew A. Torigian

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@article{DBLP:journals/mia/DaiLTTHNZLXU24,
  author       = {Jian Dai and
                  Tiange Liu and
                  Drew A. Torigian and
                  Yubing Tong and
                  Shiwei Han and
                  Pengju Nie and
                  Jing Zhang and
                  Ran Li and
                  Fei Xie and
                  Jayaram K. Udupa},
  title        = {GA-Net: {A} geographical attention neural network for the segmentation
                  of body torso tissue composition},
  journal      = {Medical Image Anal.},
  volume       = {91},
  pages        = {102987},
  year         = {2024},
  url          = {https://doi.org/10.1016/j.media.2023.102987},
  doi          = {10.1016/J.MEDIA.2023.102987},
  timestamp    = {Sat, 13 Jan 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/mia/DaiLTTHNZLXU24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/LiuBTTU24,
  author       = {Tiange Liu and
                  Qingze Bai and
                  Drew A. Torigian and
                  Yubing Tong and
                  Jayaram K. Udupa},
  title        = {VSmTrans: {A} hybrid paradigm integrating self-attention and convolution
                  for 3D medical image segmentation},
  journal      = {Medical Image Anal.},
  volume       = {98},
  pages        = {103295},
  year         = {2024},
  url          = {https://doi.org/10.1016/j.media.2024.103295},
  doi          = {10.1016/J.MEDIA.2024.103295},
  timestamp    = {Fri, 20 Sep 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/mia/LiuBTTU24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wacv/WangPAZKTTKUB24,
  author       = {Bin Wang and
                  Hongyi Pan and
                  Armstrong Aboah and
                  Zheyuan Zhang and
                  Elif Keles and
                  Drew A. Torigian and
                  Baris Turkbey and
                  Elizabeth A. Krupinski and
                  Jayaram K. Udupa and
                  Ulas Bagci},
  title        = {GazeGNN: {A} Gaze-Guided Graph Neural Network for Chest X-ray Classification},
  booktitle    = {{IEEE/CVF} Winter Conference on Applications of Computer Vision, {WACV}
                  2024, Waikoloa, HI, USA, January 3-8, 2024},
  pages        = {2183--2192},
  publisher    = {{IEEE}},
  year         = {2024},
  url          = {https://doi.org/10.1109/WACV57701.2024.00219},
  doi          = {10.1109/WACV57701.2024.00219},
  timestamp    = {Wed, 17 Apr 2024 07:41:22 +0200},
  biburl       = {https://dblp.org/rec/conf/wacv/WangPAZKTTKUB24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2406-04679,
  author       = {Qingze Bai and
                  Tiange Liu and
                  Zhi Liu and
                  Yubing Tong and
                  Drew A. Torigian and
                  Jayaram K. Udupa},
  title        = {XctDiff: Reconstruction of {CT} Images with Consistent Anatomical
                  Structures from a Single Radiographic Projection Image},
  journal      = {CoRR},
  volume       = {abs/2406.04679},
  year         = {2024},
  url          = {https://doi.org/10.48550/arXiv.2406.04679},
  doi          = {10.48550/ARXIV.2406.04679},
  eprinttype    = {arXiv},
  eprint       = {2406.04679},
  timestamp    = {Wed, 24 Jul 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2406-04679.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iotais/BagciUCTMZB23,
  author       = {Ulas Bagci and
                  Jayaram K. Udupa and
                  Xinjian Chen and
                  Drew A. Torigian and
                  Alpay Medetalibeyoglu and
                  Diwei Zhou and
                  Li Bai},
  title        = {Object Localization Using Non-Euclidean Metrics},
  booktitle    = {{IEEE} International Conference on Internet of Things and Intelligence
                  Systems, IoTaIS 2023, Bali, Indonesia, November 28-30, 2023},
  pages        = {1--7},
  publisher    = {{IEEE}},
  year         = {2023},
  url          = {https://doi.org/10.1109/IoTaIS60147.2023.10346049},
  doi          = {10.1109/IOTAIS60147.2023.10346049},
  timestamp    = {Wed, 28 Aug 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/iotais/BagciUCTMZB23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mibam/DaiUTTNZLH023,
  author       = {Jian Dai and
                  Jayaram K. Udupa and
                  Drew A. Torigian and
                  Yubing Tong and
                  Pengju Nie and
                  Jing Zhang and
                  Ran Li and
                  Shiwei Han and
                  Tian Liu},
  editor       = {Barjor S. Gimi and
                  Andrzej Kr{\'{o}}l},
  title        = {A deep-learning-based geographic attention model for body composition
                  tissue segmentation},
  booktitle    = {Medical Imaging 2023: Biomedical Applications in Molecular, Structural,
                  and Functional Imaging, San Diego, CA, USA, February 19-23, 2023},
  series       = {{SPIE} Proceedings},
  volume       = {12468},
  publisher    = {{SPIE}},
  year         = {2023},
  url          = {https://doi.org/10.1117/12.2653371},
  doi          = {10.1117/12.2653371},
  timestamp    = {Sat, 27 Apr 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mibam/DaiUTTNZLH023.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mibam/LiUTT23,
  author       = {Jieyu Li and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Drew A. Torigian},
  editor       = {Barjor S. Gimi and
                  Andrzej Kr{\'{o}}l},
  title        = {Estimating normal metabolic activity for disease quantification via
                  {PET/CT} images},
  booktitle    = {Medical Imaging 2023: Biomedical Applications in Molecular, Structural,
                  and Functional Imaging, San Diego, CA, USA, February 19-23, 2023},
  series       = {{SPIE} Proceedings},
  volume       = {12468},
  publisher    = {{SPIE}},
  year         = {2023},
  url          = {https://doi.org/10.1117/12.2654882},
  doi          = {10.1117/12.2654882},
  timestamp    = {Tue, 12 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/mibam/LiUTT23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/YaoCMVDGTRKWS23,
  author       = {Michael S. Yao and
                  Allison Chae and
                  Matthew T. MacLean and
                  Anurag Verma and
                  Jeffrey T. Duda and
                  James C. Gee and
                  Drew A. Torigian and
                  Daniel J. Rader and
                  Charles E. Kahn and
                  Walter R. Witschey and
                  Hersh Sagreiya},
  editor       = {Islem Rekik and
                  Ehsan Adeli and
                  Sang Hyun Park and
                  Celia Cintas and
                  Ghada Zamzmi},
  title        = {SynthA1c: Towards Clinically Interpretable Patient Representations
                  for Diabetes Risk Stratification},
  booktitle    = {Predictive Intelligence in Medicine - 6th International Workshop,
                  {PRIME} 2023, Held in Conjunction with {MICCAI} 2023, Vancouver, BC,
                  Canada, October 8, 2023, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {14277},
  pages        = {46--57},
  publisher    = {Springer},
  year         = {2023},
  url          = {https://doi.org/10.1007/978-3-031-46005-0\_5},
  doi          = {10.1007/978-3-031-46005-0\_5},
  timestamp    = {Sat, 14 Oct 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/YaoCMVDGTRKWS23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miigp/AkhtarUTLWOMLCA23,
  author       = {Yusuf Akhtar and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Tiange Liu and
                  Caiyun Wu and
                  Dewey Odhner and
                  Joseph M. McDonough and
                  Carina Lott and
                  Abbie Clark and
                  Jason B. Anari and
                  Patrick J. Cahill and
                  Drew A. Torigian},
  editor       = {Cristian A. Linte and
                  Jeffrey H. Siewerdsen},
  title        = {Auto-segmentation of thoraco-abdominal organs in free breathing pediatric
                  dynamic {MRI}},
  booktitle    = {Medical Imaging 2023: Image-Guided Procedures, Robotic Interventions,
                  and Modeling, San Diego, CA, USA, February 19-23, 2023},
  series       = {{SPIE} Proceedings},
  volume       = {12466},
  publisher    = {{SPIE}},
  year         = {2023},
  url          = {https://doi.org/10.1117/12.2654995},
  doi          = {10.1117/12.2654995},
  timestamp    = {Thu, 21 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miigp/AkhtarUTLWOMLCA23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miigp/IlesanmiUTLOPNL23,
  author       = {Ademola Enitan Ilesanmi and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Tiange Liu and
                  Dewey Odhner and
                  Gargi Pednekar and
                  Sanghita Nag and
                  Sharon Lewis and
                  Joe Camaratta and
                  Steve Owens and
                  Drew A. Torigian},
  editor       = {Cristian A. Linte and
                  Jeffrey H. Siewerdsen},
  title        = {Auto-segmentation of thoracic brachial plexuses for radiation therapy
                  planning},
  booktitle    = {Medical Imaging 2023: Image-Guided Procedures, Robotic Interventions,
                  and Modeling, San Diego, CA, USA, February 19-23, 2023},
  series       = {{SPIE} Proceedings},
  volume       = {12466},
  publisher    = {{SPIE}},
  year         = {2023},
  url          = {https://doi.org/10.1117/12.2655159},
  doi          = {10.1117/12.2655159},
  timestamp    = {Wed, 20 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miigp/IlesanmiUTLOPNL23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2305-18221,
  author       = {Bin Wang and
                  Hongyi Pan and
                  Armstrong Aboah and
                  Zheyuan Zhang and
                  Ahmet Enis {\c{C}}etin and
                  Drew A. Torigian and
                  Baris Turkbey and
                  Elizabeth A. Krupinski and
                  Jayaram K. Udupa and
                  Ulas Bagci},
  title        = {GazeGNN: {A} Gaze-Guided Graph Neural Network for Disease Classification},
  journal      = {CoRR},
  volume       = {abs/2305.18221},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2305.18221},
  doi          = {10.48550/ARXIV.2305.18221},
  eprinttype    = {arXiv},
  eprint       = {2305.18221},
  timestamp    = {Tue, 30 Jan 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2305-18221.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmir/IlesanmiIITU22,
  author       = {Ademola Enitan Ilesanmi and
                  Taiwo Ilesanmi and
                  Oluwagbenga Paul Idowu and
                  Drew A. Torigian and
                  Jayaram K. Udupa},
  title        = {Organ segmentation from computed tomography images using the 3D convolutional
                  neural network: a systematic review},
  journal      = {Int. J. Multim. Inf. Retr.},
  volume       = {11},
  number       = {3},
  pages        = {315--331},
  year         = {2022},
  url          = {https://doi.org/10.1007/s13735-022-00242-9},
  doi          = {10.1007/S13735-022-00242-9},
  timestamp    = {Thu, 18 Aug 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ijmir/IlesanmiIITU22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/JinUZTOPNLPMGSC22,
  author       = {Chao Jin and
                  Jayaram K. Udupa and
                  Liming Zhao and
                  Yubing Tong and
                  Dewey Odhner and
                  Gargi Pednekar and
                  Sanghita Nag and
                  Sharon Lewis and
                  Nicholas Poole and
                  Sutirth Mannikeri and
                  Sudarshana Govindasamy and
                  Aarushi Singh and
                  Joe Camaratta and
                  Steve Owens and
                  Drew A. Torigian},
  title        = {Object recognition in medical images via anatomy-guided deep learning},
  journal      = {Medical Image Anal.},
  volume       = {81},
  pages        = {102527},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.media.2022.102527},
  doi          = {10.1016/J.MEDIA.2022.102527},
  timestamp    = {Sun, 13 Nov 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/mia/JinUZTOPNLPMGSC22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tbe/SunUTWGMTC22,
  author       = {Chang{-}Jian Sun and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Caiyun Wu and
                  Shuxu Guo and
                  Joseph M. McDonough and
                  Drew A. Torigian and
                  Patrick J. Cahill},
  title        = {A Minimally Interactive Method for Labeling Respiratory Phases in
                  Free-Breathing Thoracic Dynamic {MRI} for Constructing 4D Images},
  journal      = {{IEEE} Trans. Biomed. Eng.},
  volume       = {69},
  number       = {4},
  pages        = {1424--1434},
  year         = {2022},
  url          = {https://doi.org/10.1109/TBME.2021.3118535},
  doi          = {10.1109/TBME.2021.3118535},
  timestamp    = {Fri, 29 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tbe/SunUTWGMTC22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/vlsisp/AnwarITJPAEAB22,
  author       = {Syed Muhammad Anwar and
                  Ismail Irmakci and
                  Drew A. Torigian and
                  Sachin Jambawalikar and
                  Georgios Z. Papadakis and
                  Can Akgun and
                  Jutta Ellermann and
                  Mehmet Ak{\c{c}}akaya and
                  Ulas Bagci},
  title        = {Semi-Supervised Deep Learning for Multi-Tissue Segmentation from Multi-Contrast
                  {MRI}},
  journal      = {J. Signal Process. Syst.},
  volume       = {94},
  number       = {5},
  pages        = {497--510},
  year         = {2022},
  url          = {https://doi.org/10.1007/s11265-020-01612-4},
  doi          = {10.1007/S11265-020-01612-4},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/vlsisp/AnwarITJPAEAB22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mibam/HaoUTTHKXWCSWA22,
  author       = {You Hao and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Drew A. Torigian and
                  Zihan Huang and
                  Rachel M. Kogan and
                  Lipeng Xie and
                  David Wootton and
                  Kokren Choy and
                  Sanghun Sin and
                  Mark E. Wagshul and
                  Raanan Arens},
  editor       = {Barjor S. Gimi and
                  Andrzej Kr{\'{o}}l},
  title        = {Upper airway motion analysis in obstructive sleep apnea syndrome {(OSAS)}
                  via dynamic {MRI}},
  booktitle    = {Medical Imaging 2022: Biomedical Applications in Molecular, Structural,
                  and Functional Imaging, San Diego, CA, USA, February 20-24, 2022 /
                  Online, March 21-27, 2022},
  series       = {{SPIE} Proceedings},
  volume       = {12036},
  publisher    = {{SPIE}},
  year         = {2022},
  url          = {https://doi.org/10.1117/12.2613920},
  doi          = {10.1117/12.2613920},
  timestamp    = {Thu, 07 Mar 2024 15:34:21 +0100},
  biburl       = {https://dblp.org/rec/conf/mibam/HaoUTTHKXWCSWA22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miigp/TongHUTJCTR22,
  author       = {Yubing Tong and
                  Zihan Huang and
                  Jayaram K. Udupa and
                  Leihui Tong and
                  Brandon C. Jones and
                  Gregory Chang and
                  Drew A. Torigian and
                  Chamith S. Rajapakse},
  editor       = {Cristian A. Linte and
                  Jeffrey H. Siewerdsen},
  title        = {Bone and bone marrow segmentation from hip 3T magnetic resonance imaging
                  by using local salient anatomy structure to guide deep learning-based
                  object localization and delineation},
  booktitle    = {Medical Imaging 2022: Image-Guided Procedures, Robotic Interventions,
                  and Modeling, San Diego, CA, USA, February 20-24, 2022 / Online, March
                  21-27, 2022},
  series       = {{SPIE} Proceedings},
  volume       = {12034},
  publisher    = {{SPIE}},
  year         = {2022},
  url          = {https://doi.org/10.1117/12.2612913},
  doi          = {10.1117/12.2612913},
  timestamp    = {Mon, 18 Mar 2024 16:25:04 +0100},
  biburl       = {https://dblp.org/rec/conf/miigp/TongHUTJCTR22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miigp/TongUHXMWLCATC22,
  author       = {Yubing Tong and
                  Jayaram K. Udupa and
                  You Hao and
                  Lipeng Xie and
                  Joseph M. McDonough and
                  Caiyun Wu and
                  Carina Lott and
                  Abigail Clark and
                  Jason B. Anari and
                  Drew A. Torigian and
                  Patrick J. Cahill},
  editor       = {Cristian A. Linte and
                  Jeffrey H. Siewerdsen},
  title        = {QdMRI: a system for a comprehensive analysis of thoracic dynamics
                  via dynamic {MRI}},
  booktitle    = {Medical Imaging 2022: Image-Guided Procedures, Robotic Interventions,
                  and Modeling, San Diego, CA, USA, February 20-24, 2022 / Online, March
                  21-27, 2022},
  series       = {{SPIE} Proceedings},
  volume       = {12034},
  publisher    = {{SPIE}},
  year         = {2022},
  url          = {https://doi.org/10.1117/12.2612117},
  doi          = {10.1117/12.2612117},
  timestamp    = {Mon, 18 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miigp/TongUHXMWLCATC22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/JinUZTOPNLPMGSC22,
  author       = {Chao Jin and
                  Jayaram K. Udupa and
                  Liming Zhao and
                  Yubing Tong and
                  Dewey Odhner and
                  Gargi Pednekar and
                  Sanghita Nag and
                  Sharon Lewis and
                  Nicholas Poole and
                  Sutirth Mannikeri and
                  Sudarshana Govindasamy and
                  Aarushi Singh and
                  Joe Camaratta and
                  Steve Owens and
                  Drew A. Torigian},
  editor       = {Olivier Colliot and
                  Ivana Isgum and
                  Bennett A. Landman and
                  Murray H. Loew},
  title        = {Anatomy-guided deep learning for object localization in medical images},
  booktitle    = {Medical Imaging 2022: Image Processing, San Diego, CA, USA, February
                  20-24, 2022 / Online, March 21-27, 2022},
  series       = {{SPIE} Proceedings},
  volume       = {12032},
  publisher    = {{SPIE}},
  year         = {2022},
  url          = {https://doi.org/10.1117/12.2612566},
  doi          = {10.1117/12.2612566},
  timestamp    = {Thu, 21 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/JinUZTOPNLPMGSC22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/LiuTTTU22,
  author       = {Tiange Liu and
                  Meng Tan and
                  Yubing Tong and
                  Drew A. Torigian and
                  Jayaram K. Udupa},
  editor       = {Olivier Colliot and
                  Ivana Isgum and
                  Bennett A. Landman and
                  Murray H. Loew},
  title        = {An anatomy-based iteratively searching convolutional neural network
                  for organ localization in {CT} images},
  booktitle    = {Medical Imaging 2022: Image Processing, San Diego, CA, USA, February
                  20-24, 2022 / Online, March 21-27, 2022},
  series       = {{SPIE} Proceedings},
  volume       = {12032},
  publisher    = {{SPIE}},
  year         = {2022},
  url          = {https://doi.org/10.1117/12.2610963},
  doi          = {10.1117/12.2610963},
  timestamp    = {Thu, 14 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/LiuTTTU22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/XieUTMWLACT22,
  author       = {Lipeng Xie and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Joseph M. McDonough and
                  Caiyun Wu and
                  Carina Lott and
                  Jason B. Anari and
                  Patrick J. Cahill and
                  Drew A. Torigian},
  editor       = {Olivier Colliot and
                  Ivana Isgum and
                  Bennett A. Landman and
                  Murray H. Loew},
  title        = {Automatic lung segmentation in dynamic thoracic {MRI} using two-stage
                  deep convolutional neural networks},
  booktitle    = {Medical Imaging 2022: Image Processing, San Diego, CA, USA, February
                  20-24, 2022 / Online, March 21-27, 2022},
  series       = {{SPIE} Proceedings},
  volume       = {12032},
  publisher    = {{SPIE}},
  year         = {2022},
  url          = {https://doi.org/10.1117/12.2612558},
  doi          = {10.1117/12.2612558},
  timestamp    = {Thu, 14 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/XieUTMWLACT22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2209-10043,
  author       = {Michael S. Yao and
                  Allison Chae and
                  Matthew T. MacLean and
                  Anurag Verma and
                  Jeffrey T. Duda and
                  James C. Gee and
                  Drew A. Torigian and
                  Daniel J. Rader and
                  Charles Kahn and
                  Walter R. Witschey and
                  Hersh Sagreiya},
  title        = {Learning-Based Radiomic Prediction of Type 2 Diabetes Mellitus Using
                  Image-Derived Phenotypes},
  journal      = {CoRR},
  volume       = {abs/2209.10043},
  year         = {2022},
  url          = {https://doi.org/10.48550/arXiv.2209.10043},
  doi          = {10.48550/ARXIV.2209.10043},
  eprinttype    = {arXiv},
  eprint       = {2209.10043},
  timestamp    = {Wed, 28 Sep 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2209-10043.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmig/XuCUTT21,
  author       = {Guoping Xu and
                  Hanqiang Cao and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Drew A. Torigian},
  title        = {DiSegNet: {A} deep dilated convolutional encoder-decoder architecture
                  for lymph node segmentation on {PET/CT} images},
  journal      = {Comput. Medical Imaging Graph.},
  volume       = {88},
  pages        = {101851},
  year         = {2021},
  url          = {https://doi.org/10.1016/j.compmedimag.2020.101851},
  doi          = {10.1016/J.COMPMEDIMAG.2020.101851},
  timestamp    = {Tue, 23 Mar 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/cmig/XuCUTT21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/MacleanJVKLBSRM21,
  author       = {Matthew T. MacLean and
                  Qasim Jehangir and
                  Marijana Vujkovic and
                  Yi{-}An Ko and
                  Harold Litt and
                  Arijitt Borthakur and
                  Hersh Sagreiya and
                  Mark Rosen and
                  David A. Mankoff and
                  Mitchell D. Schnall and
                  Haochang Shou and
                  Julio A. Chirinos and
                  Scott M. Damrauer and
                  Drew A. Torigian and
                  Rotonya Carr and
                  Daniel J. Rader and
                  Walter R. Witschey},
  title        = {Quantification of abdominal fat from computed tomography using deep
                  learning and its association with electronic health records in an
                  academic biobank},
  journal      = {J. Am. Medical Informatics Assoc.},
  volume       = {28},
  number       = {6},
  pages        = {1178--1187},
  year         = {2021},
  url          = {https://doi.org/10.1093/jamia/ocaa342},
  doi          = {10.1093/JAMIA/OCAA342},
  timestamp    = {Wed, 28 Sep 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jamia/MacleanJVKLBSRM21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/LiUTWT21,
  author       = {Jieyu Li and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Lisheng Wang and
                  Drew A. Torigian},
  title        = {Segmentation evaluation with sparse ground truth data: Simulating
                  true segmentations as perfect/imperfect as those generated by humans},
  journal      = {Medical Image Anal.},
  volume       = {69},
  pages        = {101980},
  year         = {2021},
  url          = {https://doi.org/10.1016/j.media.2021.101980},
  doi          = {10.1016/J.MEDIA.2021.101980},
  timestamp    = {Sun, 04 Aug 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/mia/LiUTWT21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/HaoUTWLMLQGATC21,
  author       = {You Hao and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Caiyun Wu and
                  Hua Li and
                  Joseph M. McDonough and
                  Carina Lott and
                  Catherine Qiu and
                  Nirupa Galagedera and
                  Jason B. Anari and
                  Drew A. Torigian and
                  Patrick J. Cahill},
  title        = {OFx: {A} method of 4D image construction from free-breathing non-gated
                  {MRI} slice acquisitions of the thorax via optical flux},
  journal      = {Medical Image Anal.},
  volume       = {72},
  pages        = {102088},
  year         = {2021},
  url          = {https://doi.org/10.1016/j.media.2021.102088},
  doi          = {10.1016/J.MEDIA.2021.102088},
  timestamp    = {Thu, 29 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/mia/HaoUTWLMLQGATC21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mibam/XieUTTHKNWCSWA21,
  author       = {Lipeng Xie and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Drew A. Torigian and
                  Zihan Huang and
                  Rachel M. Kogan and
                  Jennifer Ben Nathan and
                  David Wootton and
                  Kokren Choy and
                  Sanghun Sin and
                  Mark E. Wagshul and
                  Raanan Arens},
  editor       = {Barjor S. Gimi and
                  Andrzej Kr{\'{o}}l},
  title        = {Automatic upper airway segmentation in static and dynamic {MRI} via
                  deep convolutional neural networks},
  booktitle    = {Medical Imaging 2021: Biomedical Applications in Molecular, Structural,
                  and Functional Imaging, Online, February 15-20, 2021},
  series       = {{SPIE} Proceedings},
  volume       = {11600},
  publisher    = {{SPIE}},
  year         = {2021},
  url          = {https://doi.org/10.1117/12.2581974},
  doi          = {10.1117/12.2581974},
  timestamp    = {Wed, 06 Mar 2024 16:11:37 +0100},
  biburl       = {https://dblp.org/rec/conf/mibam/XieUTTHKNWCSWA21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miigp/TongUMLWRATC21,
  author       = {Yubing Tong and
                  Jayaram K. Udupa and
                  Joseph M. McDonough and
                  Carina Lott and
                  Caiyun Wu and
                  Chamith S. Rajapakse and
                  Jason B. Anari and
                  Drew A. Torigian and
                  Patrick J. Cahill},
  editor       = {Cristian A. Linte and
                  Jeffrey H. Siewerdsen},
  title        = {Lung parenchymal characterization via thoracic dynamic {MRI} in normal
                  children and pediatric patients with {TIS}},
  booktitle    = {Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions,
                  and Modeling, Online, February 15-20, 2021},
  series       = {{SPIE} Proceedings},
  volume       = {11598},
  publisher    = {{SPIE}},
  year         = {2021},
  url          = {https://doi.org/10.1117/12.2581708},
  doi          = {10.1117/12.2581708},
  timestamp    = {Mon, 26 Feb 2024 16:22:50 +0100},
  biburl       = {https://dblp.org/rec/conf/miigp/TongUMLWRATC21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/LiUTOT21,
  author       = {Jieyu Li and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Dewey Odhner and
                  Drew A. Torigian},
  editor       = {Ivana Isgum and
                  Bennett A. Landman},
  title        = {Anatomy recognition in {CT} images of head and neck region via precision
                  atlases},
  booktitle    = {Medical Imaging 2021: Image Processing, Online, February 15-19, 2021},
  series       = {{SPIE} Proceedings},
  volume       = {11596},
  publisher    = {{SPIE}},
  year         = {2021},
  url          = {https://doi.org/10.1117/12.2581234},
  doi          = {10.1117/12.2581234},
  timestamp    = {Mon, 11 Mar 2024 15:57:50 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/LiUTOT21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/LiUTWT20,
  author       = {Jieyu Li and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Lisheng Wang and
                  Drew A. Torigian},
  title        = {LinSEM: Linearizing segmentation evaluation metrics for medical images},
  journal      = {Medical Image Anal.},
  volume       = {60},
  year         = {2020},
  url          = {https://doi.org/10.1016/j.media.2019.101601},
  doi          = {10.1016/J.MEDIA.2019.101601},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/mia/LiUTWT20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mibam/SunUTSWTA20,
  author       = {Chang{-}Jian Sun and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Sanghun Sin and
                  Mark E. Wagshul and
                  Drew A. Torigian and
                  Raanan Arens},
  editor       = {Andrzej Kr{\'{o}}l and
                  Barjor S. Gimi},
  title        = {Segmentation of 4D images via space-time neural networks},
  booktitle    = {Medical Imaging 2020: Biomedical Applications in Molecular, Structural,
                  and Functional Imaging, Houston, TX, USA, February 15-20, 2020},
  series       = {{SPIE} Proceedings},
  volume       = {11317},
  pages        = {113170J},
  publisher    = {{SPIE}},
  year         = {2020},
  url          = {https://doi.org/10.1117/12.2549605},
  doi          = {10.1117/12.2549605},
  timestamp    = {Wed, 06 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/mibam/SunUTSWTA20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mibam/YiUTALCT20,
  author       = {Jizheng Yi and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Michaela R. Anderson and
                  David J. Lederer and
                  Jason D. Christie and
                  Drew A. Torigian},
  editor       = {Andrzej Kr{\'{o}}l and
                  Barjor S. Gimi},
  title        = {Localization and segmentation of optimal slices for chest fat quantification
                  in {CT} via deep learning},
  booktitle    = {Medical Imaging 2020: Biomedical Applications in Molecular, Structural,
                  and Functional Imaging, Houston, TX, USA, February 15-20, 2020},
  series       = {{SPIE} Proceedings},
  volume       = {11317},
  pages        = {113170K},
  publisher    = {{SPIE}},
  year         = {2020},
  url          = {https://doi.org/10.1117/12.2550377},
  doi          = {10.1117/12.2550377},
  timestamp    = {Thu, 23 Jul 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mibam/YiUTALCT20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/micad/MortaziUTT20,
  author       = {Aliasghar Mortazi and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Drew A. Torigian},
  editor       = {Horst K. Hahn and
                  Maciej A. Mazurowski},
  title        = {A post-acquisition standardization method for positron emission tomography
                  images},
  booktitle    = {Medical Imaging 2020: Computer-Aided Diagnosis, Houston, TX, USA,
                  February 16-19, 2020},
  series       = {{SPIE} Proceedings},
  volume       = {11314},
  publisher    = {{SPIE}},
  year         = {2020},
  url          = {https://doi.org/10.1117/12.2550423},
  doi          = {10.1117/12.2550423},
  timestamp    = {Tue, 05 Mar 2024 15:24:16 +0100},
  biburl       = {https://dblp.org/rec/conf/micad/MortaziUTT20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/LaLondeTB20,
  author       = {Rodney LaLonde and
                  Drew A. Torigian and
                  Ulas Bagci},
  editor       = {Anne L. Martel and
                  Purang Abolmaesumi and
                  Danail Stoyanov and
                  Diana Mateus and
                  Maria A. Zuluaga and
                  S. Kevin Zhou and
                  Daniel Racoceanu and
                  Leo Joskowicz},
  title        = {Encoding Visual Attributes in Capsules for Explainable Medical Diagnoses},
  booktitle    = {Medical Image Computing and Computer Assisted Intervention - {MICCAI}
                  2020 - 23rd International Conference, Lima, Peru, October 4-8, 2020,
                  Proceedings, Part {I}},
  series       = {Lecture Notes in Computer Science},
  volume       = {12261},
  pages        = {294--304},
  publisher    = {Springer},
  year         = {2020},
  url          = {https://doi.org/10.1007/978-3-030-59710-8\_29},
  doi          = {10.1007/978-3-030-59710-8\_29},
  timestamp    = {Tue, 01 Jun 2021 15:22:56 +0200},
  biburl       = {https://dblp.org/rec/conf/miccai/LaLondeTB20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miigp/SunUTWMQLATC20,
  author       = {Chang{-}Jian Sun and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Caiyun Wu and
                  Joseph M. McDonough and
                  Catherine Qiu and
                  Carina Lott and
                  Jason B. Anari and
                  Drew A. Torigian and
                  Patrick J. Cahill},
  editor       = {Baowei Fei and
                  Cristian A. Linte},
  title        = {Automatic labeling of respiratory phases and detection of abnormal
                  respiratory signals in free-breathing thoracic dynamic {MR} image
                  acquisitions based on deep learning},
  booktitle    = {Medical Imaging 2020: Image-Guided Procedures, Robotic Interventions,
                  and Modeling, Houston, TX, USA, February 15-20, 2020},
  series       = {{SPIE} Proceedings},
  volume       = {11315},
  pages        = {113150A},
  publisher    = {{SPIE}},
  year         = {2020},
  url          = {https://doi.org/10.1117/12.2549983},
  doi          = {10.1117/12.2549983},
  timestamp    = {Tue, 22 Mar 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miigp/SunUTWMQLATC20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miigp/JinUT20,
  author       = {Ze Jin and
                  Jayaram K. Udupa and
                  Drew A. Torigian},
  editor       = {Baowei Fei and
                  Cristian A. Linte},
  title        = {Obtaining the potential number of object models/atlases needed in
                  medical image analysis},
  booktitle    = {Medical Imaging 2020: Image-Guided Procedures, Robotic Interventions,
                  and Modeling, Houston, TX, USA, February 15-20, 2020},
  series       = {{SPIE} Proceedings},
  volume       = {11315},
  pages        = {1131533},
  publisher    = {{SPIE}},
  year         = {2020},
  url          = {https://doi.org/10.1117/12.2549827},
  doi          = {10.1117/12.2549827},
  timestamp    = {Tue, 07 Jul 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miigp/JinUT20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/LiUTWT20,
  author       = {Jieyu Li and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Lisheng Wang and
                  Drew A. Torigian},
  editor       = {Ivana Isgum and
                  Bennett A. Landman},
  title        = {Anatomy segmentation evaluation with sparse ground truth data},
  booktitle    = {Medical Imaging 2020: Image Processing, Houston, TX, USA, February
                  15-20, 2020},
  series       = {{SPIE} Proceedings},
  volume       = {11313},
  pages        = {113131G},
  publisher    = {{SPIE}},
  year         = {2020},
  url          = {https://doi.org/10.1117/12.2549327},
  doi          = {10.1117/12.2549327},
  timestamp    = {Tue, 21 Jul 2020 15:32:21 +0200},
  biburl       = {https://dblp.org/rec/conf/miip/LiUTWT20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2003-00541,
  author       = {Ismail Irmakci and
                  Syed Muhammad Anwar and
                  Drew A. Torigian and
                  Ulas Bagci},
  title        = {Deep Learning for Musculoskeletal Image Analysis},
  journal      = {CoRR},
  volume       = {abs/2003.00541},
  year         = {2020},
  url          = {https://arxiv.org/abs/2003.00541},
  eprinttype    = {arXiv},
  eprint       = {2003.00541},
  timestamp    = {Tue, 10 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2003-00541.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2004-14003,
  author       = {Arjun D. Desai and
                  Francesco Caliv{\'{a}} and
                  Claudia Iriondo and
                  Naji Khosravan and
                  Aliasghar Mortazi and
                  Sachin Jambawalikar and
                  Drew A. Torigian and
                  Jutta Ellermann and
                  Mehmet Ak{\c{c}}akaya and
                  Ulas Bagci and
                  Radhika Tibrewala and
                  Io Flament and
                  Matthew O'Brien and
                  Sharmila Majumdar and
                  Mathias Perslev and
                  Akshay Pai and
                  Christian Igel and
                  Erik B. Dam and
                  Sibaji Gaj and
                  Mingrui Yang and
                  Kunio Nakamura and
                  Xiaojuan Li and
                  Cem M. Deniz and
                  Vladimir Juras and
                  Ravinder Regatte and
                  Garry Gold and
                  Brian A. Hargreaves and
                  Valentina Pedoia and
                  Akshay S. Chaudhari},
  title        = {The International Workshop on Osteoarthritis Imaging Knee {MRI} Segmentation
                  Challenge: {A} Multi-Institute Evaluation and Analysis Framework on
                  a Standardized Dataset},
  journal      = {CoRR},
  volume       = {abs/2004.14003},
  year         = {2020},
  url          = {https://arxiv.org/abs/2004.14003},
  eprinttype    = {arXiv},
  eprint       = {2004.14003},
  timestamp    = {Sat, 23 Jan 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2004-14003.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/TongUOWST19,
  author       = {Yubing Tong and
                  Jayaram K. Udupa and
                  Dewey Odhner and
                  Caiyun Wu and
                  Stephen J. Schuster and
                  Drew A. Torigian},
  title        = {Disease quantification on {PET/CT} images without explicit object
                  delineation},
  journal      = {Medical Image Anal.},
  volume       = {51},
  pages        = {169--183},
  year         = {2019},
  url          = {https://doi.org/10.1016/j.media.2018.11.002},
  doi          = {10.1016/J.MEDIA.2018.11.002},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/mia/TongUOWST19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/WuUTOPSMAALMSJT19,
  author       = {Xingyu Wu and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Dewey Odhner and
                  Gargi V. Pednekar and
                  Charles B. Simone II and
                  David McLaughlin and
                  Chavanon Apinorasethkul and
                  Ontida Apinorasethkul and
                  John Lukens and
                  Dimitris Mihailidis and
                  Geraldine Shammo and
                  Paul James and
                  Akhil Tiwari and
                  Lisa Wojtowicz and
                  Joseph Camaratta and
                  Drew A. Torigian},
  title        = {{AAR-RT} - {A} system for auto-contouring organs at risk on {CT} images
                  for radiation therapy planning: Principles, design, and large-scale
                  evaluation on head-and-neck and thoracic cancer cases},
  journal      = {Medical Image Anal.},
  volume       = {54},
  pages        = {45--62},
  year         = {2019},
  url          = {https://doi.org/10.1016/j.media.2019.01.008},
  doi          = {10.1016/J.MEDIA.2019.01.008},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/mia/WuUTOPSMAALMSJT19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/JinUT19,
  author       = {Ze Jin and
                  Jayaram K. Udupa and
                  Drew A. Torigian},
  title        = {How many models/atlases are needed as priors for capturing anatomic
                  population variations?},
  journal      = {Medical Image Anal.},
  volume       = {58},
  year         = {2019},
  url          = {https://doi.org/10.1016/j.media.2019.101550},
  doi          = {10.1016/J.MEDIA.2019.101550},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/mia/JinUT19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acssc/IrmakciATB19,
  author       = {Ismail Irmakci and
                  Syed Muhammad Anwar and
                  Drew A. Torigian and
                  Ulas Bagci},
  editor       = {Michael B. Matthews},
  title        = {Deep Learning for Musculoskeletal Image Analysis},
  booktitle    = {53rd Asilomar Conference on Signals, Systems, and Computers, {ACSCC}
                  2019, Pacific Grove, CA, USA, November 3-6, 2019},
  pages        = {1481--1485},
  publisher    = {{IEEE}},
  year         = {2019},
  url          = {https://doi.org/10.1109/IEEECONF44664.2019.9048671},
  doi          = {10.1109/IEEECONF44664.2019.9048671},
  timestamp    = {Tue, 29 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/acssc/IrmakciATB19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mibam/SunUTWGMTC19,
  author       = {Chang{-}Jian Sun and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Caiyun Wu and
                  Shuxu Guo and
                  Joseph M. McDonough and
                  Drew A. Torigian and
                  Robert M. Campbell Jr.},
  editor       = {Barjor Gimi and
                  Andrzej Kr{\'{o}}l},
  title        = {Auto-labeling of respiratory time points in free-breathing thoracic
                  dynamic {MR} image acquisitions for 4D image construction},
  booktitle    = {Medical Imaging 2019: Biomedical Applications in Molecular, Structural,
                  and Functional Imaging, San Diego, California, United States, 16-21
                  February 2019},
  series       = {{SPIE} Proceedings},
  volume       = {10953},
  pages        = {109531B},
  publisher    = {{SPIE}},
  year         = {2019},
  url          = {https://doi.org/10.1117/12.2513218},
  doi          = {10.1117/12.2513218},
  timestamp    = {Tue, 22 Mar 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/mibam/SunUTWGMTC19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/MortaziKTKB19,
  author       = {Aliasghar Mortazi and
                  Naji Khosravan and
                  Drew A. Torigian and
                  Sila Kurugol and
                  Ulas Bagci},
  editor       = {Heung{-}Il Suk and
                  Mingxia Liu and
                  Pingkun Yan and
                  Chunfeng Lian},
  title        = {Weakly Supervised Segmentation by a Deep Geodesic Prior},
  booktitle    = {Machine Learning in Medical Imaging - 10th International Workshop,
                  {MLMI} 2019, Held in Conjunction with {MICCAI} 2019, Shenzhen, China,
                  October 13, 2019, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {11861},
  pages        = {238--246},
  publisher    = {Springer},
  year         = {2019},
  url          = {https://doi.org/10.1007/978-3-030-32692-0\_28},
  doi          = {10.1007/978-3-030-32692-0\_28},
  timestamp    = {Tue, 18 Jan 2022 13:58:27 +0100},
  biburl       = {https://dblp.org/rec/conf/miccai/MortaziKTKB19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miigp/TongUT19,
  author       = {Yubing Tong and
                  Jayaram K. Udupa and
                  Drew A. Torigian},
  editor       = {Baowei Fei and
                  Cristian A. Linte},
  title        = {Super-mask-based object localization for auto-contouring in head and
                  neck radiation therapy planning},
  booktitle    = {Medical Imaging 2019: Image-Guided Procedures, Robotic Interventions,
                  and Modeling, San Diego, CA, USA, 16-21 February 2019},
  series       = {{SPIE} Proceedings},
  volume       = {10951},
  pages        = {109512L},
  publisher    = {{SPIE}},
  year         = {2019},
  url          = {https://doi.org/10.1117/12.2511973},
  doi          = {10.1117/12.2511973},
  timestamp    = {Tue, 07 Jul 2020 11:42:07 +0200},
  biburl       = {https://dblp.org/rec/conf/miigp/TongUT19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/JinUT19,
  author       = {Ze Jin and
                  Jayaram K. Udupa and
                  Drew A. Torigian},
  editor       = {Elsa D. Angelini and
                  Bennett A. Landman},
  title        = {Obtaining the potential number of models/atlases needed for capturing
                  anatomic variations in population images},
  booktitle    = {Medical Imaging 2019: Image Processing, San Diego, California, United
                  States, 16-21 February 2019},
  series       = {{SPIE} Proceedings},
  volume       = {10949},
  pages        = {109493G},
  publisher    = {{SPIE}},
  year         = {2019},
  url          = {https://doi.org/10.1117/12.2513073},
  doi          = {10.1117/12.2513073},
  timestamp    = {Wed, 17 Apr 2019 09:16:41 +0200},
  biburl       = {https://dblp.org/rec/conf/miip/JinUT19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1908-06498,
  author       = {Aliasghar Mortazi and
                  Naji Khosravan and
                  Drew A. Torigian and
                  Sila Kurugol and
                  Ulas Bagci},
  title        = {Weakly Supervised Segmentation by {A} Deep Geodesic Prior},
  journal      = {CoRR},
  volume       = {abs/1908.06498},
  year         = {2019},
  url          = {http://arxiv.org/abs/1908.06498},
  eprinttype    = {arXiv},
  eprint       = {1908.06498},
  timestamp    = {Mon, 26 Aug 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1908-06498.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1909-05926,
  author       = {Rodney LaLonde and
                  Drew A. Torigian and
                  Ulas Bagci},
  title        = {Encoding High-Level Visual Attributes in Capsules for Explainable
                  Medical Diagnoses},
  journal      = {CoRR},
  volume       = {abs/1909.05926},
  year         = {2019},
  url          = {http://arxiv.org/abs/1909.05926},
  eprinttype    = {arXiv},
  eprint       = {1909.05926},
  timestamp    = {Wed, 18 Sep 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-1909-05926.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mibam/TongUWWMCMTC18,
  author       = {Yubing Tong and
                  Jayaram K. Udupa and
                  E. Paul Wileyto and
                  Caiyun Wu and
                  Joseph M. McDonough and
                  Anthony Capraro and
                  Oscar H. Mayer and
                  Drew A. Torigian and
                  Robert M. Campbell Jr.},
  editor       = {Barjor Gimi and
                  Andrzej Kr{\'{o}}l},
  title        = {Quantitative dynamic {MRI} (QdMRI) volumetric analysis of pediatric
                  patients with thoracic insufficiency syndrome},
  booktitle    = {Medical Imaging 2018: Biomedical Applications in Molecular, Structural,
                  and Functional Imaging, Houston, Texas, United States, 10-15 February
                  2018},
  series       = {{SPIE} Proceedings},
  volume       = {10578},
  pages        = {1057806},
  publisher    = {{SPIE}},
  year         = {2018},
  url          = {https://doi.org/10.1117/12.2294048},
  doi          = {10.1117/12.2294048},
  timestamp    = {Sun, 02 Jun 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mibam/TongUWWMCMTC18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mibam/TongUWOPSMASJCT18,
  author       = {Yubing Tong and
                  Jayaram K. Udupa and
                  Xingyu Wu and
                  Dewey Odhner and
                  Gargi Pednekar and
                  Charles B. Simone II and
                  David McLaughlin and
                  Chavanon Apinorasethkul and
                  Geraldine Shammo and
                  Paul James and
                  Joseph Camaratta and
                  Drew A. Torigian},
  editor       = {Barjor Gimi and
                  Andrzej Kr{\'{o}}l},
  title        = {Hierarchical model-based object localization for auto-contouring in
                  head and neck radiation therapy planning},
  booktitle    = {Medical Imaging 2018: Biomedical Applications in Molecular, Structural,
                  and Functional Imaging, Houston, Texas, United States, 10-15 February
                  2018},
  series       = {{SPIE} Proceedings},
  volume       = {10578},
  pages        = {1057822},
  publisher    = {{SPIE}},
  year         = {2018},
  url          = {https://doi.org/10.1117/12.2294042},
  doi          = {10.1117/12.2294042},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mibam/TongUWOPSMASJCT18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/micad/WangUTCVOGCT18,
  author       = {Chuang Wang and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Jerry Chen and
                  Sriram Venigalla and
                  Dewey Odhner and
                  Thomas J. Guzzo and
                  John Christodouleas and
                  Drew A. Torigian},
  editor       = {Nicholas A. Petrick and
                  Kensaku Mori},
  title        = {Urinary bladder cancer T-staging from T2-weighted {MR} images using
                  an optimal biomarker approach},
  booktitle    = {Medical Imaging 2018: Computer-Aided Diagnosis, Houston, Texas, USA,
                  10-15 February 2018},
  series       = {{SPIE} Proceedings},
  volume       = {10575},
  pages        = {105752D},
  publisher    = {{SPIE}},
  year         = {2018},
  url          = {https://doi.org/10.1117/12.2294550},
  doi          = {10.1117/12.2294550},
  timestamp    = {Fri, 02 Mar 2018 09:21:21 +0100},
  biburl       = {https://dblp.org/rec/conf/micad/WangUTCVOGCT18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/micad/JagadaleUTWMTC18,
  author       = {Basavaraj N. Jagadale and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Caiyun Wu and
                  Joseph M. McDonough and
                  Drew A. Torigian and
                  Robert M. Campbell Jr.},
  editor       = {Nicholas A. Petrick and
                  Kensaku Mori},
  title        = {Lung parenchymal analysis on dynamic {MRI} in thoracic insufficiency
                  syndrome to assess changes following surgical intervention},
  booktitle    = {Medical Imaging 2018: Computer-Aided Diagnosis, Houston, Texas, USA,
                  10-15 February 2018},
  series       = {{SPIE} Proceedings},
  volume       = {10575},
  pages        = {105753M},
  publisher    = {{SPIE}},
  year         = {2018},
  url          = {https://doi.org/10.1117/12.2295012},
  doi          = {10.1117/12.2295012},
  timestamp    = {Mon, 29 Jul 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/micad/JagadaleUTWMTC18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/micad/TongUWWPRLCT18,
  author       = {Yubing Tong and
                  Jayaram K. Udupa and
                  Chuang Wang and
                  Caiyun Wu and
                  Gargi Pednekar and
                  Michaela D. Restivo and
                  David J. Lederer and
                  Jason D. Christie and
                  Drew A. Torigian},
  editor       = {Nicholas A. Petrick and
                  Kensaku Mori},
  title        = {Quantitative analysis of adipose tissue on chest {CT} to predict primary
                  graft dysfunction in lung transplant recipients: a novel optimal biomarker
                  approach},
  booktitle    = {Medical Imaging 2018: Computer-Aided Diagnosis, Houston, Texas, USA,
                  10-15 February 2018},
  series       = {{SPIE} Proceedings},
  volume       = {10575},
  pages        = {105753K},
  publisher    = {{SPIE}},
  year         = {2018},
  url          = {https://doi.org/10.1117/12.2294050},
  doi          = {10.1117/12.2294050},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/micad/TongUWWPRLCT18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miigp/PednekarUMWTSCT18,
  author       = {Gargi V. Pednekar and
                  Jayaram K. Udupa and
                  David J. McLaughlin and
                  Xingyu Wu and
                  Yubing Tong and
                  Charles B. Simone II and
                  Joseph Camaratta and
                  Drew A. Torigian},
  editor       = {Baowei Fei and
                  Robert J. Webster III},
  title        = {Image quality and segmentation},
  booktitle    = {Medical Imaging 2018: Image-Guided Procedures, Robotic Interventions,
                  and Modeling, Houston, Texas, United States, 10-15 February 2018},
  series       = {{SPIE} Proceedings},
  volume       = {10576},
  pages        = {105762N},
  publisher    = {{SPIE}},
  year         = {2018},
  url          = {https://doi.org/10.1117/12.2293622},
  doi          = {10.1117/12.2293622},
  timestamp    = {Wed, 22 Feb 2023 21:12:03 +0100},
  biburl       = {https://dblp.org/rec/conf/miigp/PednekarUMWTSCT18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miigp/SongUT0WMCTC18,
  author       = {Jie Song and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Liang Xiao and
                  Caiyun Wu and
                  Joseph M. McDonough and
                  Anthony Capraro and
                  Drew A. Torigian and
                  Robert M. Campbell Jr.},
  editor       = {Baowei Fei and
                  Robert J. Webster III},
  title        = {Architectural analysis on dynamic {MRI} to study thoracic insufficiency
                  syndrome},
  booktitle    = {Medical Imaging 2018: Image-Guided Procedures, Robotic Interventions,
                  and Modeling, Houston, Texas, United States, 10-15 February 2018},
  series       = {{SPIE} Proceedings},
  volume       = {10576},
  pages        = {105762C},
  publisher    = {{SPIE}},
  year         = {2018},
  url          = {https://doi.org/10.1117/12.2294551},
  doi          = {10.1117/12.2294551},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miigp/SongUT0WMCTC18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miigp/WuUTOPSMALMSJCT18,
  author       = {Xingyu Wu and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Dewey Odhner and
                  Gargi V. Pednekar and
                  Charles B. Simone II and
                  David McLaughlin and
                  Chavanon Apinorasethkul and
                  John Lukens and
                  Dimitris Mihailidis and
                  Geraldine Shammo and
                  Paul James and
                  Joseph Camaratta and
                  Drew A. Torigian},
  editor       = {Baowei Fei and
                  Robert J. Webster III},
  title        = {Auto-contouring via automatic anatomy recognition of organs at risk
                  in head and neck cancer on {CT} images},
  booktitle    = {Medical Imaging 2018: Image-Guided Procedures, Robotic Interventions,
                  and Modeling, Houston, Texas, United States, 10-15 February 2018},
  series       = {{SPIE} Proceedings},
  volume       = {10576},
  pages        = {1057617},
  publisher    = {{SPIE}},
  year         = {2018},
  url          = {https://doi.org/10.1117/12.2293946},
  doi          = {10.1117/12.2293946},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miigp/WuUTOPSMALMSJCT18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/XuUTCOTW18,
  author       = {Guoping Xu and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Hanqiang Cao and
                  Dewey Odhner and
                  Drew A. Torigian and
                  Xingyu Wu},
  editor       = {Elsa D. Angelini and
                  Bennett A. Landman},
  title        = {Thoracic lymph node station recognition on {CT} images based on automatic
                  anatomy recognition with an optimal parent strategy},
  booktitle    = {Medical Imaging 2018: Image Processing, Houston, Texas, United States,
                  10-15 February 2018},
  series       = {{SPIE} Proceedings},
  volume       = {10574},
  pages        = {105742F},
  publisher    = {{SPIE}},
  year         = {2018},
  url          = {https://doi.org/10.1117/12.2293258},
  doi          = {10.1117/12.2293258},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miip/XuUTCOTW18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/YanUTXOT18,
  author       = {Fengxia Yan and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Guoping Xu and
                  Dewey Odhner and
                  Drew A. Torigian},
  editor       = {Elsa D. Angelini and
                  Bennett A. Landman},
  title        = {Automatic anatomy recognition using neural network learning of object
                  relationships via virtual landmarks},
  booktitle    = {Medical Imaging 2018: Image Processing, Houston, Texas, United States,
                  10-15 February 2018},
  series       = {{SPIE} Proceedings},
  volume       = {10574},
  pages        = {105742O},
  publisher    = {{SPIE}},
  year         = {2018},
  url          = {https://doi.org/10.1117/12.2293700},
  doi          = {10.1117/12.2293700},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miip/YanUTXOT18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mibam/TongUOWFWST17,
  author       = {Yubing Tong and
                  Jayaram K. Udupa and
                  Dewey Odhner and
                  Caiyun Wu and
                  Danielle Fitzpatrick and
                  Nicole Winchell and
                  Stephen J. Schuster and
                  Drew A. Torigian},
  editor       = {Andrzej Kr{\'{o}}l and
                  Barjor Gimi},
  title        = {Disease quantification on {PET/CT} images without object delineation},
  booktitle    = {Medical Imaging 2017: Biomedical Applications in Molecular, Structural,
                  and Functional Imaging, Orlando, Florida, United States, 11-16 February
                  2017},
  series       = {{SPIE} Proceedings},
  volume       = {10137},
  pages        = {101370V},
  publisher    = {{SPIE}},
  year         = {2017},
  url          = {https://doi.org/10.1117/12.2254907},
  doi          = {10.1117/12.2254907},
  timestamp    = {Thu, 09 May 2019 17:10:31 +0200},
  biburl       = {https://dblp.org/rec/conf/mibam/TongUOWFWST17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mibam/TongUOWZMCTC17,
  author       = {Yubing Tong and
                  Jayaram K. Udupa and
                  Dewey Odhner and
                  Caiyun Wu and
                  Yue Zhao and
                  Joseph M. McDonough and
                  Anthony Capraro and
                  Drew A. Torigian and
                  Robert M. Campbell Jr.},
  editor       = {Andrzej Kr{\'{o}}l and
                  Barjor Gimi},
  title        = {Interactive iterative relative fuzzy connectedness lung segmentation
                  on thoracic 4D dynamic {MR} images},
  booktitle    = {Medical Imaging 2017: Biomedical Applications in Molecular, Structural,
                  and Functional Imaging, Orlando, Florida, United States, 11-16 February
                  2017},
  series       = {{SPIE} Proceedings},
  volume       = {10137},
  pages        = {1013723},
  publisher    = {{SPIE}},
  year         = {2017},
  url          = {https://doi.org/10.1117/12.2254968},
  doi          = {10.1117/12.2254968},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/mibam/TongUOWZMCTC17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/micad/BaiUTXT17,
  author       = {Peirui Bai and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Shipeng Xie and
                  Drew A. Torigian},
  editor       = {Samuel G. Armato III and
                  Nicholas A. Petrick},
  title        = {Automatic thoracic body region localization},
  booktitle    = {Medical Imaging 2017: Computer-Aided Diagnosis, Orlando, Florida,
                  United States, 11-16 February 2017},
  series       = {{SPIE} Proceedings},
  volume       = {10134},
  pages        = {101343X},
  publisher    = {{SPIE}},
  year         = {2017},
  url          = {https://doi.org/10.1117/12.2254862},
  doi          = {10.1117/12.2254862},
  timestamp    = {Mon, 29 Jul 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/micad/BaiUTXT17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miigp/TongUOBT17,
  author       = {Yubing Tong and
                  Jayaram K. Udupa and
                  Dewey Odhner and
                  Peirui Bai and
                  Drew A. Torigian},
  editor       = {Robert J. Webster III and
                  Baowei Fei},
  title        = {Virtual landmarks},
  booktitle    = {Medical Imaging 2017: Image-Guided Procedures, Robotic Interventions,
                  and Modeling, Orlando, Florida, United States, 11-16 February 2017},
  series       = {{SPIE} Proceedings},
  volume       = {10135},
  pages        = {1013521},
  publisher    = {{SPIE}},
  year         = {2017},
  url          = {https://doi.org/10.1117/12.2254855},
  doi          = {10.1117/12.2254855},
  timestamp    = {Wed, 22 Feb 2023 21:12:03 +0100},
  biburl       = {https://dblp.org/rec/conf/miigp/TongUOBT17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cmig/MatsumotoUTST16,
  author       = {Monica M. S. Matsumoto and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Babak Saboury and
                  Drew A. Torigian},
  title        = {Quantitative normal thoracic anatomy at {CT}},
  journal      = {Comput. Medical Imaging Graph.},
  volume       = {51},
  pages        = {1--10},
  year         = {2016},
  url          = {https://doi.org/10.1016/j.compmedimag.2016.03.005},
  doi          = {10.1016/J.COMPMEDIMAG.2016.03.005},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/cmig/MatsumotoUTST16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mibam/LiuUOTGART16,
  author       = {Yu Liu and
                  Jayaram K. Udupa and
                  Dewey Odhner and
                  Yubing Tong and
                  Shuxu Guo and
                  Rosemary Attor and
                  Danica Reinicke and
                  Drew A. Torigian},
  editor       = {Barjor Gimi and
                  Andrzej Kr{\'{o}}l},
  title        = {Definition and automatic anatomy recognition of lymph node zones in
                  the pelvis on {CT} images},
  booktitle    = {Medical Imaging 2016: Biomedical Applications in Molecular, Structural,
                  and Functional Imaging, San Diego, California, United States, 27 February
                  - 3 March 2016},
  series       = {{SPIE} Proceedings},
  volume       = {9788},
  pages        = {97881J},
  publisher    = {{SPIE}},
  year         = {2016},
  url          = {https://doi.org/10.1117/12.2217672},
  doi          = {10.1117/12.2217672},
  timestamp    = {Mon, 06 May 2019 16:51:32 +0200},
  biburl       = {https://dblp.org/rec/conf/mibam/LiuUOTGART16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mibam/TongUTWCL16,
  author       = {Yubing Tong and
                  Jayaram K. Udupa and
                  Drew A. Torigian and
                  Caiyun Wu and
                  Jason D. Christie and
                  David J. Lederer},
  editor       = {Barjor Gimi and
                  Andrzej Kr{\'{o}}l},
  title        = {Fat quantification and analysis of lung transplant patients on unenhanced
                  chest {CT} images based on standardized anatomic space},
  booktitle    = {Medical Imaging 2016: Biomedical Applications in Molecular, Structural,
                  and Functional Imaging, San Diego, California, United States, 27 February
                  - 3 March 2016},
  series       = {{SPIE} Proceedings},
  volume       = {9788},
  pages        = {978817},
  publisher    = {{SPIE}},
  year         = {2016},
  url          = {https://doi.org/10.1117/12.2217866},
  doi          = {10.1117/12.2217866},
  timestamp    = {Wed, 16 Mar 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/mibam/TongUTWCL16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/micad/HuangUTOT16,
  author       = {Lidong Huang and
                  Jayaram K. Udupa and
                  Yubing Tong and
                  Dewey Odhner and
                  Drew A. Torigian},
  editor       = {Georgia D. Tourassi and
                  Samuel G. Armato III},
  title        = {Automatic anatomy recognition on {CT} images with pathology},
  booktitle    = {Medical Imaging 2016: Computer-Aided Diagnosis, San Diego, California,
                  United States, 27 February - 3 March 2016},
  series       = {{SPIE} Proceedings},
  volume       = {9785},
  pages        = {97851S},
  publisher    = {{SPIE}},
  year         = {2016},
  url          = {https://doi.org/10.1117/12.2216442},
  doi          = {10.1117/12.2216442},
  timestamp    = {Mon, 22 Jan 2018 08:03:17 +0100},
  biburl       = {https://dblp.org/rec/conf/micad/HuangUTOT16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/micad/SongUOTT16,
  author       = {Yihua Song and
                  Jayaram K. Udupa and
                  Dewey Odhner and
                  Yubing Tong and
                  Drew A. Torigian},
  editor       = {Georgia D. Tourassi and
                  Samuel G. Armato III},
  title        = {Lymph node detection in IASLC-defined zones on {PET/CT} images},
  booktitle    = {Medical Imaging 2016: Computer-Aided Diagnosis, San Diego, California,
                  United States, 27 February - 3 March 2016},
  series       = {{SPIE} Proceedings},
  volume       = {9785},
  pages        = {978515},
  publisher    = {{SPIE}},
  year         = {2016},
  url          = {https://doi.org/10.1117/12.2217767},
  doi          = {10.1117/12.2217767},
  timestamp    = {Mon, 22 Jan 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/micad/SongUOTT16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miigp/GreveraUOT16,
  author       = {George J. Grevera and
                  Jayaram K. Udupa and
                  Dewey Odhner and
                  Drew A. Torigian},
  editor       = {Robert J. Webster III and
                  Ziv R. Yaniv},
  title        = {Optimal atlas construction through hierarchical image registration},
  booktitle    = {Medical Imaging 2016: Image-Guided Procedures, Robotic Interventions,
                  and Modeling, San Diego, California, United States, 27 February -
                  3 March 2016},
  series       = {{SPIE} Proceedings},
  volume       = {9786},
  pages        = {97862C},
  publisher    = {{SPIE}},
  year         = {2016},
  url          = {https://doi.org/10.1117/12.2217262},
  doi          = {10.1117/12.2217262},
  timestamp    = {Wed, 22 Feb 2023 21:12:03 +0100},
  biburl       = {https://dblp.org/rec/conf/miigp/GreveraUOT16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miigp/TongUWPSLCT16,
  author       = {Yubing Tong and
                  Jayaram K. Udupa and
                  Caiyun Wu and
                  Gargi Pednekar and
                  Janani Rajan Subramanian and
                  David J. Lederer and
                  Jason D. Christie and
                  Drew A. Torigian},
  editor       = {Robert J. Webster III and
                  Ziv R. Yaniv},
  title        = {Fat segmentation on chest {CT} images via fuzzy models},
  booktitle    = {Medical Imaging 2016: Image-Guided Procedures, Robotic Interventions,
                  and Modeling, San Diego, California, United States, 27 February -
                  3 March 2016},
  series       = {{SPIE} Proceedings},
  volume       = {9786},
  pages        = {978609},
  publisher    = {{SPIE}},
  year         = {2016},
  url          = {https://doi.org/10.1117/12.2217864},
  doi          = {10.1117/12.2217864},
  timestamp    = {Wed, 16 Mar 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miigp/TongUWPSLCT16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miigp/CaoUOHTT16,
  author       = {Li Cao and
                  Jayaram K. Udupa and
                  Dewey Odhner and
                  Lidong Huang and
                  Yubing Tong and
                  Drew A. Torigian},
  editor       = {Robert J. Webster III and
                  Ziv R. Yaniv},
  title        = {A general approach to liver lesion segmentation in {CT} images},
  booktitle    = {Medical Imaging 2016: Image-Guided Procedures, Robotic Interventions,
                  and Modeling, San Diego, California, United States, 27 February -
                  3 March 2016},
  series       = {{SPIE} Proceedings},
  volume       = {9786},
  pages        = {978623},
  publisher    = {{SPIE}},
  year         = {2016},
  url          = {https://doi.org/10.1117/12.2217778},
  doi          = {10.1117/12.2217778},
  timestamp    = {Thu, 25 Jan 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miigp/CaoUOHTT16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mibam/TongUTMSA15,
  author       = {Yubing Tong and
                  Jayaram K. Udupa and
                  Drew A. Torigian and
                  Monica M. S. Matsumoto and
                  Sanghun Sin and
                  Raanan Arens},
  editor       = {Barjor Gimi and
                  Robert C. Molthen},
  title        = {{MR} image analytics to characterize upper airway architecture in
                  children with {OSAS}},
  booktitle    = {Medical Imaging 2015: Biomedical Applications in Molecular, Structural,
                  and Functional Imaging, Orlando, Florida, United States, 21-26 February
                  2015},
  series       = {{SPIE} Proceedings},
  volume       = {9417},
  pages        = {94172J},
  publisher    = {{SPIE}},
  year         = {2015},
  url          = {https://doi.org/10.1117/12.2082574},
  doi          = {10.1117/12.2082574},
  timestamp    = {Mon, 13 May 2019 12:17:23 +0200},
  biburl       = {https://dblp.org/rec/conf/mibam/TongUTMSA15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miigp/TongUOST15,
  author       = {Yubing Tong and
                  Jayaram K. Udupa and
                  Dewey Odhner and
                  Shobhit Sharma and
                  Drew A. Torigian},
  editor       = {Robert J. Webster III and
                  Ziv R. Yaniv},
  title        = {Interactive non-uniformity correction and intensity standardization
                  of {MR} images},
  booktitle    = {Medical Imaging 2015: Image-Guided Procedures, Robotic Interventions,
                  and Modeling, Orlando, Florida, United States, 21-26 February 2015},
  series       = {{SPIE} Proceedings},
  volume       = {9415},
  pages        = {94151N},
  publisher    = {{SPIE}},
  year         = {2015},
  url          = {https://doi.org/10.1117/12.2082878},
  doi          = {10.1117/12.2082878},
  timestamp    = {Wed, 22 Feb 2023 21:12:03 +0100},
  biburl       = {https://dblp.org/rec/conf/miigp/TongUOST15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miigp/WangUOTZT15,
  author       = {Huiqian Wang and
                  Jayaram K. Udupa and
                  Dewey Odhner and
                  Yubing Tong and
                  Liming Zhao and
                  Drew A. Torigian},
  editor       = {Robert J. Webster III and
                  Ziv R. Yaniv},
  title        = {Body-wide anatomy recognition in {PET/CT} images},
  booktitle    = {Medical Imaging 2015: Image-Guided Procedures, Robotic Interventions,
                  and Modeling, Orlando, Florida, United States, 21-26 February 2015},
  series       = {{SPIE} Proceedings},
  volume       = {9415},
  pages        = {941518},
  publisher    = {{SPIE}},
  year         = {2015},
  url          = {https://doi.org/10.1117/12.2082718},
  doi          = {10.1117/12.2082718},
  timestamp    = {Fri, 09 Mar 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miigp/WangUOTZT15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/ZhaoUOWTT15,
  author       = {Liming Zhao and
                  Jayaram K. Udupa and
                  Dewey Odhner and
                  Huiqian Wang and
                  Yubing Tong and
                  Drew A. Torigian},
  editor       = {S{\'{e}}bastien Ourselin and
                  Martin Andreas Styner},
  title        = {Automatic anatomy recognition of sparse objects},
  booktitle    = {Medical Imaging 2015: Image Processing, Orlando, Florida, USA, February
                  24-26, 2015},
  series       = {{SPIE} Proceedings},
  volume       = {9413},
  pages        = {94133N},
  publisher    = {{SPIE}},
  year         = {2015},
  url          = {https://doi.org/10.1117/12.2082567},
  doi          = {10.1117/12.2082567},
  timestamp    = {Wed, 24 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miip/ZhaoUOWTT15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/UdupaOZTMCFVCSMSAT14,
  author       = {Jayaram K. Udupa and
                  Dewey Odhner and
                  Liming Zhao and
                  Yubing Tong and
                  Monica M. S. Matsumoto and
                  Krzysztof Chris Ciesielski and
                  Alexandre X. Falc{\~{a}}o and
                  Pavithra Vaideeswaran and
                  Victoria Ciesielski and
                  Babak Saboury and
                  Syedmehrdad Mohammadianrasanani and
                  Sanghun Sin and
                  Raanan Arens and
                  Drew A. Torigian},
  title        = {Body-wide hierarchical fuzzy modeling, recognition, and delineation
                  of anatomy in medical images},
  journal      = {Medical Image Anal.},
  volume       = {18},
  number       = {5},
  pages        = {752--771},
  year         = {2014},
  url          = {https://doi.org/10.1016/j.media.2014.04.003},
  doi          = {10.1016/J.MEDIA.2014.04.003},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/mia/UdupaOZTMCFVCSMSAT14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/micad/MatsumotoBUAT14,
  author       = {Monica M. S. Matsumoto and
                  Niha G. Beig and
                  Jayaram K. Udupa and
                  Steven Archer and
                  Drew A. Torigian},
  editor       = {Stephen R. Aylward and
                  Lubomir M. Hadjiiski},
  title        = {Automatic localization of IASLC-defined mediastinal lymph node stations
                  on {CT} images using fuzzy models},
  booktitle    = {Medical Imaging 2014: Computer-Aided Diagnosis, San Diego, California,
                  United States, 15-20 February 2014},
  series       = {{SPIE} Proceedings},
  volume       = {9035},
  pages        = {90350J},
  publisher    = {{SPIE}},
  year         = {2014},
  url          = {https://doi.org/10.1117/12.2044333},
  doi          = {10.1117/12.2044333},
  timestamp    = {Sat, 19 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/micad/MatsumotoBUAT14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miigp/SunUOTT14,
  author       = {Kaioqiong Sun and
                  Jayaram K. Udupa and
                  Dewey Odhner and
                  Yubing Tong and
                  Drew A. Torigian},
  editor       = {Ziv R. Yaniv and
                  David R. Holmes III},
  title        = {Automatic thoracic anatomy segmentation on {CT} images using hierarchical
                  fuzzy models and registration},
  booktitle    = {Medical Imaging 2014: Image-Guided Procedures, Robotic Interventions,
                  and Modeling, San Diego, California, United States, 15-20 February
                  2014},
  series       = {{SPIE} Proceedings},
  volume       = {9036},
  pages        = {90361P},
  publisher    = {{SPIE}},
  year         = {2014},
  url          = {https://doi.org/10.1117/12.2044315},
  doi          = {10.1117/12.2044315},
  timestamp    = {Mon, 12 Mar 2018 11:36:23 +0100},
  biburl       = {https://dblp.org/rec/conf/miigp/SunUOTT14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/RittnerUT14,
  author       = {Let{\'{\i}}cia Rittner and
                  Jayaram K. Udupa and
                  Drew A. Torigian},
  editor       = {S{\'{e}}bastien Ourselin and
                  Martin A. Styner},
  title        = {Multiple fuzzy object modeling improves sensitivity in automatic anatomy
                  recognition},
  booktitle    = {Medical Imaging 2014: Image Processing, San Diego, California, USA,
                  February 16-18, 2014},
  series       = {{SPIE} Proceedings},
  volume       = {9034},
  pages        = {90342U},
  publisher    = {{SPIE}},
  year         = {2014},
  url          = {https://doi.org/10.1117/12.2044297},
  doi          = {10.1117/12.2044297},
  timestamp    = {Sun, 04 Jun 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miip/RittnerUT14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/TongUT14,
  author       = {Yubing Tong and
                  Jayaram K. Udupa and
                  Drew A. Torigian},
  editor       = {S{\'{e}}bastien Ourselin and
                  Martin A. Styner},
  title        = {Standardized anatomic space for abdominal fat quantification},
  booktitle    = {Medical Imaging 2014: Image Processing, San Diego, California, USA,
                  February 16-18, 2014},
  series       = {{SPIE} Proceedings},
  volume       = {9034},
  pages        = {90343D},
  publisher    = {{SPIE}},
  year         = {2014},
  url          = {https://doi.org/10.1117/12.2044254},
  doi          = {10.1117/12.2044254},
  timestamp    = {Wed, 24 May 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miip/TongUT14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cviu/ChenUAT13,
  author       = {Xinjian Chen and
                  Jayaram K. Udupa and
                  Abass Alavi and
                  Drew A. Torigian},
  title        = {{GC-ASM:} Synergistic integration of graph-cut and active shape model
                  strategies for medical image segmentation},
  journal      = {Comput. Vis. Image Underst.},
  volume       = {117},
  number       = {5},
  pages        = {513--524},
  year         = {2013},
  url          = {https://doi.org/10.1016/j.cviu.2012.12.001},
  doi          = {10.1016/J.CVIU.2012.12.001},
  timestamp    = {Thu, 17 Mar 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/cviu/ChenUAT13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miigp/UdupaOTMCVCSZMT13,
  author       = {Jayaram K. Udupa and
                  Dewey Odhner and
                  Yubing Tong and
                  Monica M. S. Matsumoto and
                  Krzysztof Chris Ciesielski and
                  Pavithra Vaideeswaran and
                  Victoria Ciesielski and
                  Babak Saboury and
                  Liming Zhao and
                  Syedmehrdad Mohammadianrasanani and
                  Drew A. Torigian},
  editor       = {David R. Holmes III and
                  Ziv R. Yaniv},
  title        = {Fuzzy model-based body-wide anatomy recognition in medical images},
  booktitle    = {Medical Imaging 2013: Image-Guided Procedures, Robotic Interventions,
                  and Modeling, Lake Buena Vista (Orlando Area), Florida, United States,
                  9-14 February 2013},
  series       = {{SPIE} Proceedings},
  volume       = {8671},
  pages        = {86712B},
  publisher    = {{SPIE}},
  year         = {2013},
  url          = {https://doi.org/10.1117/12.2007983},
  doi          = {10.1117/12.2007983},
  timestamp    = {Fri, 02 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miigp/UdupaOTMCVCSZMT13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miigp/UdupaOFCMMGST12,
  author       = {Jayaram K. Udupa and
                  Dewey Odhner and
                  Alexandre X. Falc{\~{a}}o and
                  Krzysztof Chris Ciesielski and
                  Paulo A. V. Miranda and
                  Monica M. S. Matsumoto and
                  George J. Grevera and
                  Babak Saboury and
                  Drew A. Torigian},
  editor       = {David R. Holmes III and
                  Kenneth H. Wong},
  title        = {Automatic anatomy recognition via fuzzy object models},
  booktitle    = {Medical Imaging 2012: Image-Guided Procedures, Robotic Interventions,
                  and Modeling, San Diego, California, United States, 4-9 February 2012},
  series       = {{SPIE} Proceedings},
  volume       = {8316},
  pages        = {831605},
  publisher    = {{SPIE}},
  year         = {2012},
  url          = {https://doi.org/10.1117/12.911580},
  doi          = {10.1117/12.911580},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miigp/UdupaOFCMMGST12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miigp/UdupaOFCMVMGST11,
  author       = {Jayaram K. Udupa and
                  Dewey Odhner and
                  Alexandre X. Falc{\~{a}}o and
                  Krzysztof Chris Ciesielski and
                  Paulo A. V. Miranda and
                  Pavithra Vaideeswaran and
                  Shipra Mishra and
                  George J. Grevera and
                  Babak Saboury and
                  Drew A. Torigian},
  editor       = {Kenneth H. Wong and
                  David R. Holmes III},
  title        = {Fuzzy object modeling},
  booktitle    = {Medical Imaging 2011: Visualization, Image-Guided Procedures, and
                  Modeling, Lake Buena Vista (Orlando), Florida, United States, 12-17
                  February 2011},
  series       = {{SPIE} Proceedings},
  volume       = {7964},
  pages        = {79640B},
  publisher    = {{SPIE}},
  year         = {2011},
  url          = {https://doi.org/10.1117/12.878273},
  doi          = {10.1117/12.878273},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/miigp/UdupaOFCMVMGST11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/micad/ChenUAT10,
  author       = {Xinjian Chen and
                  Jayaram K. Udupa and
                  Abass Alavi and
                  Drew A. Torigian},
  editor       = {Nico Karssemeijer and
                  Ronald M. Summers},
  title        = {Pathology detection on medical images based in oriented active appearance
                  models},
  booktitle    = {Medical Imaging 2010: Computer-Aided Diagnosis, San Diego, California,
                  United States, 13-18 February 2010},
  series       = {{SPIE} Proceedings},
  volume       = {7624},
  pages        = {76243M},
  publisher    = {{SPIE}},
  year         = {2010},
  url          = {https://doi.org/10.1117/12.844543},
  doi          = {10.1117/12.844543},
  timestamp    = {Thu, 17 Mar 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/micad/ChenUAT10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miigp/ChenUBAT10,
  author       = {Xinjian Chen and
                  Jayaram K. Udupa and
                  Ulas Bagci and
                  Abass Alavi and
                  Drew A. Torigian},
  editor       = {Kenneth H. Wong and
                  Michael I. Miga},
  title        = {3D automatic anatomy recognition based on iterative graph-cut-ASM},
  booktitle    = {Medical Imaging 2010: Visualization, Image-Guided Procedures, and
                  Modeling, San Diego, California, United States, 13-18 February 2010},
  series       = {{SPIE} Proceedings},
  volume       = {7625},
  pages        = {76251T},
  publisher    = {{SPIE}},
  year         = {2010},
  url          = {https://doi.org/10.1117/12.844551},
  doi          = {10.1117/12.844551},
  timestamp    = {Thu, 17 Mar 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miigp/ChenUBAT10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/SongJTGGKT09,
  author       = {Gang Song and
                  Eduardo Barbosa Jr. and
                  Nicholas J. Tustison and
                  James C. Gee and
                  Warren B. Gefter and
                  Maryl Kreider and
                  Drew A. Torigian},
  title        = {Computational Analysis of {HRCT} Images for Characterization and Differentiation
                  of {ILD} and {COPD}},
  booktitle    = {Proceedings of the 2009 {IEEE} International Symposium on Biomedical
                  Imaging: From Nano to Macro, Boston, MA, USA, June 28 - July 1, 2009},
  pages        = {999--1002},
  publisher    = {{IEEE}},
  year         = {2009},
  url          = {https://doi.org/10.1109/ISBI.2009.5193223},
  doi          = {10.1109/ISBI.2009.5193223},
  timestamp    = {Wed, 04 Oct 2023 17:01:25 +0200},
  biburl       = {https://dblp.org/rec/conf/isbi/SongJTGGKT09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/ChenUTA09,
  author       = {Xinjian Chen and
                  Jayaram K. Udupa and
                  Drew A. Torigian and
                  Abass Alavi},
  editor       = {Josien P. W. Pluim and
                  Benoit M. Dawant},
  title        = {{GC-ASM:} synergistic integration of active shape modeling and graph-cut
                  methods},
  booktitle    = {Medical Imaging 2009: Image Processing, Lake Buena Vista (Orlando
                  Area), Florida, United States, 7-12 February 2009},
  series       = {{SPIE} Proceedings},
  volume       = {7259},
  pages        = {72590C},
  publisher    = {{SPIE}},
  year         = {2009},
  url          = {https://doi.org/10.1117/12.812182},
  doi          = {10.1117/12.812182},
  timestamp    = {Thu, 17 Mar 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/ChenUTA09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/ChenUZAT09,
  author       = {Xinjian Chen and
                  Jayaram K. Udupa and
                  Xiaofen Zheng and
                  Abass Alavi and
                  Drew A. Torigian},
  editor       = {Josien P. W. Pluim and
                  Benoit M. Dawant},
  title        = {Automatic anatomy recognition via multi-object-oriented active shape
                  models},
  booktitle    = {Medical Imaging 2009: Image Processing, Lake Buena Vista (Orlando
                  Area), Florida, United States, 7-12 February 2009},
  series       = {{SPIE} Proceedings},
  volume       = {7259},
  pages        = {72594P},
  publisher    = {{SPIE}},
  year         = {2009},
  url          = {https://doi.org/10.1117/12.812181},
  doi          = {10.1117/12.812181},
  timestamp    = {Thu, 17 Mar 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/ChenUZAT09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miip/LimUSJHT06,
  author       = {Seong{-}Jae Lim and
                  Jayaram K. Udupa and
                  Andre D. A. Souza and
                  Yong{-}Yeon Jeong and
                  Yo{-}Sung Ho and
                  Drew A. Torigian},
  editor       = {Joseph M. Reinhardt and
                  Josien P. W. Pluim},
  title        = {A new general method of 3D model generation for active shape image
                  segmentation},
  booktitle    = {Medical Imaging 2006: Image Processing, {MEDICAL} IMAGING, San Diego,
                  California, United States, 11-16 February 2006},
  series       = {{SPIE} Proceedings},
  volume       = {6144},
  pages        = {61444B},
  publisher    = {{SPIE}},
  year         = {2006},
  url          = {https://doi.org/10.1117/12.653751},
  doi          = {10.1117/12.653751},
  timestamp    = {Thu, 17 Jan 2019 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/miip/LimUSJHT06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}