Stop the war!Остановите войну!
for scientists:
default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDBibTeX records: Yanni Sun
@article{DBLP:journals/bib/JiangYSSYLZJSY23,
author = {Jing{-}Zhe Jiang and
Wen{-}Guang Yuan and
Jiayu Shang and
Ying{-}Hui Shi and
Li{-}Ling Yang and
Min Liu and
Peng Zhu and
Tao Jin and
Yanni Sun and
Li{-}Hong Yuan},
title = {Virus classification for viral genomic fragments using PhaGCN2},
journal = {Briefings Bioinform.},
volume = {24},
number = {1},
year = {2023},
url = {https://doi.org/10.1093/bib/bbac505},
doi = {10.1093/BIB/BBAC505},
timestamp = {Sat, 25 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/JiangYSSYLZJSY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ShangTS23,
author = {Jiayu Shang and
Xubo Tang and
Yanni Sun},
title = {PhaTYP: predicting the lifestyle for bacteriophages using {BERT}},
journal = {Briefings Bioinform.},
volume = {24},
number = {1},
year = {2023},
url = {https://doi.org/10.1093/bib/bbac487},
doi = {10.1093/BIB/BBAC487},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ShangTS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/YuAS23,
author = {Runzhou Yu and
Syed Muhammad Umer Abdullah and
Yanni Sun},
title = {HMMPolish: a coding region polishing tool for TGS-sequenced {RNA}
viruses},
journal = {Briefings Bioinform.},
volume = {24},
number = {5},
year = {2023},
url = {https://doi.org/10.1093/bib/bbad264},
doi = {10.1093/BIB/BBAD264},
timestamp = {Sat, 28 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/YuAS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuCS23,
author = {Runzhou Yu and
Dehan Cai and
Yanni Sun},
title = {AccuVIR: an ACCUrate VIRal genome assembly tool for third-generation
sequencing data},
journal = {Bioinform.},
volume = {39},
number = {1},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btac827},
doi = {10.1093/BIOINFORMATICS/BTAC827},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuCS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenTSS23,
author = {Guowei Chen and
Xubo Tang and
Mang Shi and
Yanni Sun},
title = {VirBot: an {RNA} viral contig detector for metagenomic data},
journal = {Bioinform.},
volume = {39},
number = {3},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad093},
doi = {10.1093/BIOINFORMATICS/BTAD093},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenTSS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiSTS23,
author = {Yongxin Ji and
Jiayu Shang and
Xubo Tang and
Yanni Sun},
title = {{HOTSPOT:} hierarchical host prediction for assembled plasmid contigs
with transformer},
journal = {Bioinform.},
volume = {39},
number = {5},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad283},
doi = {10.1093/BIOINFORMATICS/BTAD283},
timestamp = {Wed, 17 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JiSTS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiaoSS23,
author = {Herui Liao and
Jiayu Shang and
Yanni Sun},
title = {GDmicro: classifying host disease status with {GCN} and deep adaptation
network based on the human gut microbiome data},
journal = {Bioinform.},
volume = {39},
number = {12},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad747},
doi = {10.1093/BIOINFORMATICS/BTAD747},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiaoSS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShangPTS23,
author = {Jiayu Shang and
Cheng Peng and
Xubo Tang and
Yanni Sun},
title = {PhaVIP: Phage VIrion Protein classification based on chaos game representation
and Vision Transformer},
journal = {Bioinform.},
volume = {39},
number = {Supplement-1},
pages = {30--39},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad229},
doi = {10.1093/BIOINFORMATICS/BTAD229},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShangPTS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccai/SunY23,
author = {Yanni Sun and
Baohua Yu},
title = {Research on the Method Matching of Manufacturing Service Resources
in a Cloud Manufacturing Environment},
booktitle = {Proceedings of the 9th International Conference on Computing and Artificial
Intelligence, {ICCAI} 2023, Tianjin, China, March 17-20, 2023},
pages = {398--407},
publisher = {{ACM}},
year = {2023},
url = {https://doi.org/10.1145/3594315.3594348},
doi = {10.1145/3594315.3594348},
timestamp = {Sun, 24 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iccai/SunY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/TangSS22,
author = {Xubo Tang and
Jiayu Shang and
Yanni Sun},
title = {RdRp-based sensitive taxonomic classification of {RNA} viruses for
metagenomic data},
journal = {Briefings Bioinform.},
volume = {23},
number = {2},
year = {2022},
url = {https://doi.org/10.1093/bib/bbac011},
doi = {10.1093/BIB/BBAC011},
timestamp = {Fri, 13 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/TangSS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ShangTGS22,
author = {Jiayu Shang and
Xubo Tang and
Ruocheng Guo and
Yanni Sun},
title = {Accurate identification of bacteriophages from metagenomic data using
Transformer},
journal = {Briefings Bioinform.},
volume = {23},
number = {4},
year = {2022},
url = {https://doi.org/10.1093/bib/bbac258},
doi = {10.1093/BIB/BBAC258},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ShangTGS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ShangS22,
author = {Jiayu Shang and
Yanni Sun},
title = {{CHERRY:} a Computational metHod for accuratE pRediction of virus-pRokarYotic
interactions using a graph encoder-decoder model},
journal = {Briefings Bioinform.},
volume = {23},
number = {5},
year = {2022},
url = {https://doi.org/10.1093/bib/bbac182},
doi = {10.1093/BIB/BBAC182},
timestamp = {Tue, 06 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ShangS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CaiS22,
author = {Dehan Cai and
Yanni Sun},
title = {Reconstructing viral haplotypes using long reads},
journal = {Bioinform.},
volume = {38},
number = {8},
pages = {2127--2134},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btac089},
doi = {10.1093/BIOINFORMATICS/BTAC089},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CaiS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CaiSS22,
author = {Dehan Cai and
Jiayu Shang and
Yanni Sun},
title = {HaploDMF: viral haplotype reconstruction from long reads via deep
matrix factorization},
journal = {Bioinform.},
volume = {38},
number = {24},
pages = {5360--5367},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btac708},
doi = {10.1093/BIOINFORMATICS/BTAC708},
timestamp = {Sat, 13 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CaiSS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2201-01018,
author = {Jiayu Shang and
Yanni Sun},
title = {{CHERRY:} a Computational metHod for accuratE pRediction of virus-pRokarYotic
interactions using a graph encoder-decoder model},
journal = {CoRR},
volume = {abs/2201.01018},
year = {2022},
url = {https://arxiv.org/abs/2201.01018},
eprinttype = {arXiv},
eprint = {2201.01018},
timestamp = {Mon, 10 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2201-01018.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShangJS21,
author = {Jiayu Shang and
Jingzhe Jiang and
Yanni Sun},
title = {Bacteriophage classification for assembled contigs using graph convolutional
network},
journal = {Bioinform.},
volume = {37},
number = {Supplement},
pages = {25--33},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab293},
doi = {10.1093/BIOINFORMATICS/BTAB293},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShangJS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2102-03746,
author = {Jiayu Shang and
Jingzhe Jiang and
Yanni Sun},
title = {Bacteriophage classification for assembled contigs using Graph Convolutional
Network},
journal = {CoRR},
volume = {abs/2102.03746},
year = {2021},
url = {https://arxiv.org/abs/2102.03746},
eprinttype = {arXiv},
eprint = {2102.03746},
timestamp = {Wed, 10 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2102-03746.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2105-13570,
author = {Jiayu Shang and
Yanni Sun},
title = {Detecting the hosts of bacteriophages using GCN-based semi-supervised
learning},
journal = {CoRR},
volume = {abs/2105.13570},
year = {2021},
url = {https://arxiv.org/abs/2105.13570},
eprinttype = {arXiv},
eprint = {2105.13570},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2105-13570.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/HuangCSC20,
author = {Ruixuan Huang and
William C. Cho and
Yanni Sun and
Kei Hang Katie Chan},
title = {The Lung Cancer Associated MicroRNAs and Single Nucleotides Polymorphisms:
a Mendelian Randomization Analysis},
booktitle = {42nd Annual International Conference of the {IEEE} Engineering in
Medicine {\&} Biology Society, {EMBC} 2020, Montreal, QC, Canada,
July 20-24, 2020},
pages = {2346--2352},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/EMBC44109.2020.9176344},
doi = {10.1109/EMBC44109.2020.9176344},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/embc/HuangCSC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2009-12591,
author = {Du Nan and
Jiayu Shang and
Yanni Sun},
title = {ProDOMA: improve PROtein DOMAin classification for third-generation
sequencing reads using deep learning},
journal = {CoRR},
volume = {abs/2009.12591},
year = {2020},
url = {https://arxiv.org/abs/2009.12591},
eprinttype = {arXiv},
eprint = {2009.12591},
timestamp = {Wed, 16 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2009-12591.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenHS19,
author = {Jiao Chen and
Jiating Huang and
Yanni Sun},
title = {{TAR-VIR:} a pipeline for TARgeted VIRal strain reconstruction from
metagenomic data},
journal = {{BMC} Bioinform.},
volume = {20},
number = {1},
pages = {305:1--305:14},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-2878-2},
doi = {10.1186/S12859-019-2878-2},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenHS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenSWS19,
author = {Jiao Chen and
Jiayu Shang and
Jianrong Wang and
Yanni Sun},
title = {A binning tool to reconstruct viral haplotypes from assembled contigs},
journal = {{BMC} Bioinform.},
volume = {20},
number = {1},
pages = {544:1--544:13},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-3138-1},
doi = {10.1186/S12859-019-3138-1},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenSWS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Techa-angkoonCS19,
author = {Prapaporn Techa{-}angkoon and
Kevin L. Childs and
Yanni Sun},
title = {{GPRED-GC:} a Gene PREDiction model accounting for 5 \({}^{\mbox{{\({'}\)}}}\)-
3\({}^{\mbox{{\({'}\)}}}\) {GC} gradient},
journal = {{BMC} Bioinform.},
volume = {20-S},
number = {15},
pages = {482},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-3047-3},
doi = {10.1186/S12859-019-3047-3},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/Techa-angkoonCS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TangS19,
author = {Xubo Tang and
Yanni Sun},
title = {Fast and accurate microRNA search using {CNN}},
journal = {{BMC} Bioinform.},
volume = {20-S},
number = {23},
pages = {646},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-3279-2},
doi = {10.1186/S12859-019-3279-2},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TangS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcgenomics/DuCS19,
author = {Nan Du and
Jiao Chen and
Yanni Sun},
title = {Improving the sensitivity of long read overlap detection using grouped
short k-mer matches},
journal = {{BMC} Genom.},
volume = {20},
number = {{S2}},
year = {2019},
url = {https://doi.org/10.1186/s12864-019-5475-x},
doi = {10.1186/S12864-019-5475-X},
timestamp = {Wed, 16 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcgenomics/DuCS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenZS18,
author = {Jiao Chen and
Yingchao Zhao and
Yanni Sun},
title = {De novo haplotype reconstruction in viral quasispecies using paired-end
read guided path finding},
journal = {Bioinform.},
volume = {34},
number = {17},
pages = {2927--2935},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty202},
doi = {10.1093/BIOINFORMATICS/BTY202},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenZS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Techa-angkoonSL17,
author = {Prapaporn Techa{-}angkoon and
Yanni Sun and
Jikai Lei},
title = {A sensitive short read homology search tool for paired-end read sequencing
data},
journal = {{BMC} Bioinform.},
volume = {18},
number = {{S-12}},
pages = {77--89},
year = {2017},
url = {https://doi.org/10.1186/s12859-017-1826-2},
doi = {10.1186/S12859-017-1826-2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Techa-angkoonSL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/quanbio/ChenZS17,
author = {Jiao Chen and
Dongxiao Zhu and
Yanni Sun},
title = {Cap-seq reveals complicated miRNA transcriptional mechanisms in C.
elegans and mouse},
journal = {Quant. Biol.},
volume = {5},
number = {4},
pages = {352--367},
year = {2017},
url = {https://doi.org/10.1007/s40484-017-0123-4},
doi = {10.1007/S40484-017-0123-4},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/quanbio/ChenZS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeiS16,
author = {Jikai Lei and
Yanni Sun},
title = {Assemble CRISPRs from metagenomic sequencing data},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {520--528},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw456},
doi = {10.1093/BIOINFORMATICS/BTW456},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeiS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DuS16,
author = {Nan Du and
Yanni Sun},
title = {Improve homology search sensitivity of PacBio data by correcting frameshifts},
journal = {Bioinform.},
volume = {32},
number = {17},
pages = {529--537},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw458},
doi = {10.1093/BIOINFORMATICS/BTW458},
timestamp = {Wed, 16 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DuS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijoe/SunC16,
author = {Yanni Sun and
Xinhua Chen},
title = {Application and Realization of Improved Apriori Algorism in Hadoop
Simulation Platform for Mass Data Process},
journal = {Int. J. Online Eng.},
volume = {12},
number = {2},
pages = {16--19},
year = {2016},
url = {https://www.online-journals.org/index.php/i-joe/article/view/5037},
timestamp = {Wed, 04 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijoe/SunC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijoe/ChenS16,
author = {Xinhua Chen and
Yanni Sun},
title = {Computer Network Simulation Modeling Based on Object Oriented Petri
Net},
journal = {Int. J. Online Eng.},
volume = {12},
number = {2},
pages = {25--28},
year = {2016},
url = {https://www.online-journals.org/index.php/i-joe/article/view/5039},
timestamp = {Wed, 04 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijoe/ChenS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuanLCS15,
author = {Cheng Yuan and
Jikai Lei and
James R. Cole and
Yanni Sun},
title = {Reconstructing 16S rRNA genes in metagenomic data},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {35--43},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv231},
doi = {10.1093/BIOINFORMATICS/BTV231},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuanLCS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AchawanantakunC15,
author = {Rujira Achawanantakun and
Jiao Chen and
Yanni Sun and
Yuan Zhang},
title = {LncRNA-ID: Long non-coding {RNA} IDentification using balanced random
forests},
journal = {Bioinform.},
volume = {31},
number = {24},
pages = {3897--3905},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv480},
doi = {10.1093/BIOINFORMATICS/BTV480},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AchawanantakunC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LeiS14,
author = {Jikai Lei and
Yanni Sun},
title = {miR-PREFeR: an accurate, fast and easy-to-use plant miRNA prediction
tool using small RNA-Seq data},
journal = {Bioinform.},
volume = {30},
number = {19},
pages = {2837--2839},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu380},
doi = {10.1093/BIOINFORMATICS/BTU380},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LeiS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ColeWFCMSBPKT14,
author = {James R. Cole and
Qiong Wang and
Jordan A. Fish and
Benli Chai and
Donna M. McGarrell and
Yanni Sun and
C. Titus Brown and
Andrea Porras{-}Alfaro and
Cheryl R. Kuske and
James M. Tiedje},
title = {Ribosomal Database Project: data and tools for high throughput rRNA
analysis},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {633--642},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1244},
doi = {10.1093/NAR/GKT1244},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ColeWFCMSBPKT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ZhangSC14,
author = {Yuan Zhang and
Yanni Sun and
James R. Cole},
title = {A Scalable and Accurate Targeted Gene Assembly Tool (SAT-Assembler)
for Next-Generation Sequencing Data},
journal = {PLoS Comput. Biol.},
volume = {10},
number = {8},
year = {2014},
url = {https://doi.org/10.1371/journal.pcbi.1003737},
doi = {10.1371/JOURNAL.PCBI.1003737},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/ZhangSC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangSC13,
author = {Yuan Zhang and
Yanni Sun and
James R. Cole},
title = {A Sensitive and Accurate protein domain cLassification Tool {(SALT)}
for short reads},
journal = {Bioinform.},
volume = {29},
number = {17},
pages = {2103--2111},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt357},
doi = {10.1093/BIOINFORMATICS/BTT357},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangSC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AchawanantakunS13,
author = {Rujira Achawanantakun and
Yanni Sun},
title = {Shape and secondary structure prediction for ncRNAs including pseudoknots
based on linear {SVM}},
journal = {{BMC} Bioinform.},
volume = {14},
number = {{S-2}},
pages = {S1},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-S2-S1},
doi = {10.1186/1471-2105-14-S2-S1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AchawanantakunS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YuanS13,
author = {Cheng Yuan and
Yanni Sun},
title = {Efficient known ncRNA search including pseudoknots},
journal = {{BMC} Bioinform.},
volume = {14},
number = {{S-2}},
pages = {S25},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-S2-S25},
doi = {10.1186/1471-2105-14-S2-S25},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/YuanS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/LeiTS13,
author = {Jikai Lei and
Prapaporn Techa{-}angkoon and
Yanni Sun},
title = {Chain-RNA: {A} Comparative ncRNA Search Tool Based on the Two-Dimensional
Chain Algorithm},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {10},
number = {2},
pages = {274--285},
year = {2013},
url = {https://doi.org/10.1109/TCBB.2012.137},
doi = {10.1109/TCBB.2012.137},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/LeiTS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/Techa-angkoonS13,
author = {Prapaporn Techa{-}angkoon and
Yanni Sun},
editor = {Jing Gao},
title = {glu-RNA: aliGn highLy strUctured ncRNAs using only sequence similarity},
booktitle = {{ACM} Conference on Bioinformatics, Computational Biology and Biomedical
Informatics. {ACM-BCB} 2013, Washington, DC, USA, September 22-25,
2013},
pages = {508},
publisher = {{ACM}},
year = {2013},
url = {https://doi.org/10.1145/2506583.2506617},
doi = {10.1145/2506583.2506617},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/Techa-angkoonS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LeiTSA13,
author = {Jikai Lei and
Prapaporn Techa{-}angkoon and
Yanni Sun and
Rujira Achawanantakun},
editor = {Jing Gao},
title = {ChainKnot: a comparative H-type pseudoknot prediction tool using multiple
ab initio folding tools},
booktitle = {{ACM} Conference on Bioinformatics, Computational Biology and Biomedical
Informatics. {ACM-BCB} 2013, Washington, DC, USA, September 22-25,
2013},
pages = {535},
publisher = {{ACM}},
year = {2013},
url = {https://doi.org/10.1145/2506583.2506626},
doi = {10.1145/2506583.2506626},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/LeiTSA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SunALL12,
author = {Yanni Sun and
Osama Aljawad and
Jikai Lei and
Alex Liu},
title = {Genome-scale {NCRNA} homology search using a Hamming distance-based
filtration strategy},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-3}},
pages = {S12},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S3-S12},
doi = {10.1186/1471-2105-13-S3-S12},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SunALL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SunBY12,
author = {Yanni Sun and
Jeremy Buhler and
Cheng Yuan},
title = {Designing Filters for Fast-Known NcRNA Identification},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {3},
pages = {774--787},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.149},
doi = {10.1109/TCBB.2011.149},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SunBY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ZhangS12,
author = {Yuan Zhang and
Yanni Sun},
editor = {Sanjay Ranka and
Tamer Kahveci and
Mona Singh},
title = {PseudoDomain: identification of processed pseudogenes based on protein
domain classification},
booktitle = {{ACM} International Conference on Bioinformatics, Computational Biology
and Biomedicine, BCB' 12, Orlando, FL, {USA} - October 08 - 10, 2012},
pages = {178--185},
publisher = {{ACM}},
year = {2012},
url = {https://doi.org/10.1145/2382936.2382959},
doi = {10.1145/2382936.2382959},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/ZhangS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/ZhangS12,
author = {Yuan Zhang and
Yanni Sun},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {MetaDomain: {A} Profile HMM-Based Protein Domain Classification Tool
for Short Sequences},
booktitle = {Biocomputing 2012: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2012},
pages = {271--282},
publisher = {World Scientific Publishing},
year = {2012},
url = {http://psb.stanford.edu/psb-online/proceedings/psb12/zhang-y.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/ZhangS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangS11,
author = {Yuan Zhang and
Yanni Sun},
title = {{HMM-FRAME:} accurate protein domain classification for metagenomic
sequences in the presence of frameshift errors},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {198},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-198},
doi = {10.1186/1471-2105-12-198},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangS11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/AchawanantakunST11,
author = {Rujira Achawanantakun and
Yanni Sun and
Seyedeh Shohreh Takyar},
title = {Ncrna Consensus Secondary Structure Derivation Using Grammar Strings},
journal = {J. Bioinform. Comput. Biol.},
volume = {9},
number = {2},
pages = {317--337},
year = {2011},
url = {https://doi.org/10.1142/S0219720011005501},
doi = {10.1142/S0219720011005501},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/AchawanantakunST11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/AljawadSLL11,
author = {Osama Aljawad and
Yanni Sun and
Alex Liu and
Jikai Lei},
editor = {Robert Grossman and
Andrey Rzhetsky and
Sun Kim and
Wei Wang},
title = {NcRNA homology search using Hamming distance seeds},
booktitle = {{ACM} International Conference on Bioinformatics, Computational Biology
and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
2011},
pages = {209--217},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2147805.2147828},
doi = {10.1145/2147805.2147828},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/AljawadSLL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/KingSCP10,
author = {Stuart King and
Yanni Sun and
James R. Cole and
Sakti Pramanik},
title = {{BLAST} Tree: Fast Filtering for Genomic Sequence Classification},
booktitle = {10th {IEEE} International Conference on Bioinformatics and Bioengineering,
{BIBE} 2010, Philadelphia, Pennsylvania, USA, May 31-June 3 2010},
pages = {58--65},
publisher = {{IEEE} Computer Society},
year = {2010},
url = {https://doi.org/10.1109/BIBE.2010.74},
doi = {10.1109/BIBE.2010.74},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/KingSCP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SunB09,
author = {Yanni Sun and
Jeremy Buhler},
title = {Designing Patterns and Profiles for Faster {HMM} Search},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {6},
number = {2},
pages = {232--243},
year = {2009},
url = {https://doi.org/10.1109/TCBB.2008.14},
doi = {10.1109/TCBB.2008.14},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SunB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SunB07,
author = {Yanni Sun and
Jeremy Buhler},
title = {Designing patterns for profile {HMM} search},
journal = {Bioinform.},
volume = {23},
number = {2},
pages = {42--43},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btl323},
doi = {10.1093/BIOINFORMATICS/BTL323},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SunB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SunB06,
author = {Yanni Sun and
Jeremy Buhler},
title = {Choosing the best heuristic for seeded alignment of {DNA} sequences},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {133},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-133},
doi = {10.1186/1471-2105-7-133},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SunB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/SunB05,
author = {Yanni Sun and
Jeremy Buhler},
title = {Designing Multiple Simultaneous Seeds for {DNA} Similarity Search},
journal = {J. Comput. Biol.},
volume = {12},
number = {6},
pages = {847--861},
year = {2005},
url = {https://doi.org/10.1089/cmb.2005.12.847},
doi = {10.1089/CMB.2005.12.847},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/SunB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcss/BuhlerKS05,
author = {Jeremy Buhler and
Uri Keich and
Yanni Sun},
title = {Designing seeds for similarity search in genomic {DNA}},
journal = {J. Comput. Syst. Sci.},
volume = {70},
number = {3},
pages = {342--363},
year = {2005},
url = {https://doi.org/10.1016/j.jcss.2004.12.003},
doi = {10.1016/J.JCSS.2004.12.003},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcss/BuhlerKS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/SunB04,
author = {Yanni Sun and
Jeremy Buhler},
editor = {Philip E. Bourne and
Dan Gusfield},
title = {Designing multiple simultaneous seeds for {DNA} similarity search},
booktitle = {Proceedings of the Eighth Annual International Conference on Computational
Molecular Biology, 2004, San Diego, California, USA, March 27-31,
2004},
pages = {76--84},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/974614.974625},
doi = {10.1145/974614.974625},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/SunB04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/BuhlerKS03,
author = {Jeremy Buhler and
Uri Keich and
Yanni Sun},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Designing seeds for similarity search in genomic {DNA}},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {67--75},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640083},
doi = {10.1145/640075.640083},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/recomb/BuhlerKS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
a service of 
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
last updated on 2024-03-24 02:39 CET by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
